Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 5.5e-237 823.9 424 100.0
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.7e-231 805.1 426 97.9
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.5e-229 799.3 410 100.0
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 4.3e-205 718.0 435 87.4
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 9.2e-192 673.7 410 87.3
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 9.6e-181 637.1 421 81.2
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 9.0e-179 630.6 421 80.5
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 2.9e-177 625.5 417 80.6
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 3.0e-174 615.5 452 74.6
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 1.8e-171 606.3 418 77.0
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 5.3e-171 604.7 455 73.4
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 4.5e-170 601.7 440 74.3
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 4.9e-169 598.2 455 72.1
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 3.2e-168 595.5 422 77.0
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 2.3e-166 589.3 415 76.9
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 1.1e-165 587.0 415 76.4
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 9.6e-165 583.9 420 75.5
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 1.6e-164 583.2 414 75.1
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.1e-164 582.8 416 76.0
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 3.7e-164 582.0 437 73.9
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.4e-163 580.1 447 72.3
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 3.1e-163 578.9 426 74.9
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 6.9e-163 577.8 424 74.8
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 9.9e-162 573.9 406 76.1
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 2.2e-161 572.8 423 74.7
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 2.9e-161 572.4 427 71.7
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 2.9e-161 572.4 423 73.8
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 1.9e-160 569.7 448 69.2
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 1.9e-160 569.7 409 74.6
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 1.9e-160 569.7 456 70.6
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.6e-159 566.6 440 70.9
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 3.5e-159 565.5 441 70.3
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 3.5e-159 565.5 437 70.9
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 3.5e-159 565.5 398 74.4
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 6.0e-159 564.7 431 71.9
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 1.3e-158 563.5 454 69.8
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 2.3e-158 562.8 445 69.7
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 3.0e-158 562.4 426 72.3
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 3.0e-158 562.4 433 71.8
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 3.0e-158 562.4 427 72.8
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 5.1e-158 561.6 413 72.9
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 5.1e-158 561.6 413 72.9
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 6.7e-158 561.2 433 71.8
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 6.7e-158 561.2 433 71.8
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 1.1e-157 560.5 425 72.0
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 1.5e-157 560.1 486 65.8
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 1.5e-157 560.1 442 69.9
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 1.9e-157 559.7 401 73.6
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 4.3e-157 558.5 402 76.4
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 5.6e-157 558.1 440 71.4
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 1.6e-156 556.6 416 72.6
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 2.1e-156 556.2 412 72.8
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 2.1e-156 556.2 384 74.7
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 3.7e-156 555.4 442 69.7
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 8.2e-156 554.3 399 75.9
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 1.1e-155 553.9 429 71.6
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 2.4e-155 552.7 412 72.3
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 9.0e-155 550.8 414 71.3
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.0e-154 549.7 426 71.4
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 6.5e-153 544.7 435 70.3
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 1.4e-152 543.5 407 73.0
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 2.5e-152 542.7 412 72.1
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 2.5e-152 542.7 450 66.2
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 4.2e-152 542.0 436 70.0
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.2e-152 542.0 403 71.7
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 4.2e-152 542.0 403 71.7
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 7.1e-152 541.2 402 72.6
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.2e-151 540.4 438 67.8
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 1.6e-151 540.0 430 69.3
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 6.0e-151 538.1 476 63.2
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 1.8e-150 536.6 406 71.2
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 1.8e-150 536.6 467 66.0
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 3.9e-150 535.4 441 67.1
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 1.5e-149 533.5 397 71.8
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 1.9e-149 533.1 402 72.6
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.5e-149 532.7 448 67.0
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 5.7e-149 531.6 443 67.9
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 2.2e-148 529.6 412 69.2
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 1.4e-147 526.9 404 71.0
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 4.1e-147 525.4 387 72.9
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 7.6e-146 521.2 575 56.3
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 1.0e-145 520.8 397 71.3
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 1.0e-145 520.8 439 67.0
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 1.3e-145 520.4 398 71.4
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 1.3e-145 520.4 400 71.2
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 1.7e-145 520.0 399 70.9
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 2.2e-145 519.6 405 68.4
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 2.9e-145 519.2 397 71.0
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 3.8e-145 518.8 402 69.7
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 3.8e-145 518.8 402 69.7
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 6.5e-145 518.1 382 70.9
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 7.2e-144 514.6 423 67.4
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 4.6e-143 511.9 398 69.6
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 2.3e-142 509.6 400 68.0
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 1.5e-138 496.9 412 67.5
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 1.4e-136 490.3 431 65.9
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 1.6e-135 486.9 423 65.5
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 3.0e-134 482.6 381 65.4
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 2.6e-133 479.6 380 65.0
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 1.7e-132 476.9 470 60.6
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.7e-132 476.9 380 64.5
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 1.7e-132 476.9 375 68.0
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 8.2e-132 474.6 382 67.3
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.6e-130 469.5 384 66.1
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 5.9e-130 468.4 382 66.2
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 6.5e-129 464.9 410 65.4
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 8.5e-129 464.5 428 62.4
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 4.2e-128 462.2 489 54.8
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 1.1e-125 454.1 423 59.6
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 3.3e-125 452.6 430 60.0
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 2.8e-124 449.5 386 65.0
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.9e-121 439.5 392 60.5
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 8.5e-121 438.0 375 67.5
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 1.1e-120 437.6 358 66.5
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 1.5e-117 427.2 390 61.5
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.7e-116 423.7 343 64.1
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 2.8e-116 422.9 320 74.1
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 8.2e-116 421.4 409 59.2
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 3.5e-114 416.0 348 62.9
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 4.2e-112 409.1 349 61.9
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 2.3e-110 403.3 380 58.2
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 3.0e-110 402.9 333 64.3
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 9.5e-104 381.3 366 60.1
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 2.8e-103 379.8 363 62.3
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 2.8e-100 369.8 362 59.1
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.0e-94 349.4 377 54.9
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 2.9e-92 343.2 335 58.2
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 2.0e-90 337.0 265 71.7
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 5.0e-89 332.4 245 69.4
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 4.9e-84 315.8 335 53.4
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 1.1e-83 314.7 300 58.7
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 5.2e-78 295.8 407 46.2
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 3.4e-77 293.1 258 61.6
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 2.4e-75 287.0 285 59.3
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 4.0e-70 269.6 265 58.9
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 6.0e-66 255.8 290 52.1
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 5.6e-64 249.2 156 85.9
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 3.4e-61 240.0 121 97.5
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 2.9e-60 236.9 149 85.2
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 8.4e-60 235.3 191 71.2
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 6.2e-55 219.2 252 53.2
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 3.1e-54 216.9 253 54.9
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 6.7e-49 199.1 191 58.6
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 6.9e-46 189.1 322 35.7
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 5.8e-45 186.0 103 86.4
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 1.2e-42 178.3 114 81.6
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 2.1e-42 177.6 115 82.6
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 4.8e-39 166.4 140 68.6
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 3.4e-37 160.2 144 67.4
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 6.7e-33 146.0 79 94.9
FAN11G2706 Fragaria x ananassa HOM05D015474 ORTHO05D004670 1.9e-27 127.9 68 94.1
FAN11G2271 Fragaria x ananassa HOM05D015474 ORTHO05D004670 2.7e-26 124.0 68 91.2
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 2.5e-24 117.5 90 72.2
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 6.3e-23 112.8 74 74.3
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 2.4e-22 110.9 69 79.7
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 2.4e-22 110.9 66 86.4
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 5.9e-21 106.3 58 89.7
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.4e-19 101.7 72 65.3
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 4.2e-19 100.1 90 60.0
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 1.4e-17 95.1 51 88.2
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 5.7e-16 89.7 51 86.3
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 7.4e-16 89.4 70 60.0
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.2e-15 87.8 88 56.8
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 6.3e-15 86.3 45 91.1
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.1e-14 85.5 55 78.2
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 3.1e-14 84.0 153 44.4
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 3.5e-13 80.5 78 56.4
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 4.5e-13 80.1 51 78.4
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.0e-12 79.0 41 87.8
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.3e-09 67.8 44 68.2
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 2.3e-09 67.8 106 45.3
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 6.7e-09 66.2 75 54.7
EL10Ac9g22565 Beta vulgaris HOM05D003179 ORTHO05D003563 1.3e-07 62.0 299 23.1
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 2.2e-07 61.2 36 86.1
Prupe.6G106900 Prunus persica HOM05D003179 ORTHO05D003563 2.8e-07 60.8 282 24.8
Rhsim01G0212600 Rhododendron simsii HOM05D003179 ORTHO05D003563 1.4e-06 58.5 280 23.6
CDE02G0679 Ceratophyllum demersum HOM05D042044 ORTHO05D004670 1.8e-06 58.2 66 51.5
HPP92_022071 Vanilla planifolia HOM05D003179 ORTHO05D003563 2.4e-06 57.8 290 23.4
MD03G1124200 Malus domestica HOM05D003179 ORTHO05D003563 3.1e-06 57.4 282 24.1
EL10Ac8g20621 Beta vulgaris HOM05D003179 ORTHO05D003563 4.1e-06 57.0 282 24.1
Manes.04G016300 Manihot esculenta HOM05D003179 ORTHO05D003563 9.1e-06 55.8 282 23.8


User provided reference genes

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