Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g03940 Fragaria vesca HOM05D005878 ORTHO05D007433 4.3e-119 431.4 230 100.0
FAN06G2676 Fragaria x ananassa HOM05D005878 ORTHO05D007433 6.2e-118 427.6 230 99.1
FAN01G0732 Fragaria x ananassa HOM05D005878 ORTHO05D007433 2.5e-114 415.6 230 96.5
FAN03G0529 Fragaria x ananassa HOM05D005878 ORTHO05D007433 7.9e-97 357.5 333 65.2
RcHm_v2.0_Chr1g0327631 Rosa chinensis HOM05D005878 ORTHO05D007433 1.0e-91 340.5 228 82.9
MD00G1152600 Malus domestica HOM05D005878 ORTHO05D007433 6.1e-81 304.7 230 72.6
Prupe.2G044200 Prunus persica HOM05D005878 ORTHO05D007433 2.3e-80 302.8 230 77.4
MD07G1043600 Malus domestica HOM05D005878 ORTHO05D007433 1.2e-76 290.4 230 71.3
Cfa010961 Carpinus fangiana HOM05D005878 ORTHO05D007433 2.7e-68 262.7 233 64.4
Lalb_Chr01g0007451 Lupinus albus HOM05D005878 ORTHO05D007433 9.5e-66 254.2 228 68.0
CANSAT01G2833 Cannabis sativa HOM05D005878 ORTHO05D007433 2.8e-65 252.7 240 63.3
arahy.Tifrunner.gnm1.ann1.7Y8XE1 Arachis hypogaea HOM05D005878 ORTHO05D007433 3.6e-65 252.3 223 67.7
CiPaw.14G010200 Carya illinoinensis HOM05D005878 ORTHO05D007433 3.6e-65 252.3 223 64.1
VMungo1080G0593 Vigna mungo HOM05D005878 ORTHO05D007433 3.6e-65 252.3 201 69.7
Glyma.06G309000 Glycine max HOM05D005878 ORTHO05D007433 4.7e-65 251.9 199 70.9
Phvul.005G018300 Phaseolus vulgaris HOM05D005878 ORTHO05D007433 3.0e-64 249.2 219 64.4
QL04p021553 Quercus lobata HOM05D005878 ORTHO05D007433 5.2e-64 248.4 236 61.4
arahy.Tifrunner.gnm1.ann1.RJ91AH Arachis hypogaea HOM05D005878 ORTHO05D007433 6.8e-64 248.1 223 67.3
COL.COLO4_05616 Corchorus olitorius HOM05D005878 ORTHO05D007433 2.6e-63 246.1 225 63.6
Gohir.A05G398900 Gossypium hirsutum HOM05D005878 ORTHO05D007433 3.4e-63 245.7 220 64.5
TAR633G2731 Trochodendron aralioides HOM05D005878 ORTHO05D007433 3.4e-63 245.7 234 64.5
Eucgr.G03205 Eucalyptus grandis HOM05D005878 ORTHO05D007433 4.4e-63 245.4 200 67.0
Gohir.D04G017000 Gossypium hirsutum HOM05D005878 ORTHO05D007433 4.4e-63 245.4 220 64.1
Gorai.012G019700 Gossypium raimondii HOM05D005878 ORTHO05D007433 4.4e-63 245.4 220 64.1
Glyma.04G132400 Glycine max HOM05D005878 ORTHO05D007433 5.7e-63 245.0 201 68.2
Actinidia01690 Actinidia chinensis HOM05D005878 ORTHO05D007433 3.7e-62 242.3 222 65.3
Haze_02979 Corylus avellana HOM05D005878 ORTHO05D007433 3.7e-62 242.3 251 57.4
PGR031G0581 Punica granatum HOM05D005878 ORTHO05D007433 3.7e-62 242.3 224 63.8
Dinv02557 Davidia involucrata HOM05D005878 ORTHO05D007433 8.3e-62 241.1 225 62.2
Ca_14245_v3 Cicer arietinum L. HOM05D005878 ORTHO05D007433 1.1e-61 240.7 203 67.5
Lj3g0011478 Lotus japonicus HOM05D005878 ORTHO05D007433 2.4e-61 239.6 215 63.7
Thecc.10G140600 Theobroma cacao HOM05D005878 ORTHO05D007433 3.1e-61 239.2 222 60.8
AT5G07020 Arabidopsis thaliana HOM05D005878 ORTHO05D007433 5.4e-61 238.4 165 73.3
AL6G17170 Arabidopsis lyrata HOM05D005878 ORTHO05D007433 7.0e-61 238.0 154 77.3
BcaB05g21633 Brassica carinata HOM05D005878 ORTHO05D007433 7.0e-61 238.0 188 69.1
Thhalv10014567m.g Eutrema salsugineum HOM05D005878 ORTHO05D007433 9.2e-61 237.7 204 63.2
Hund13399 Selenicereus undatus HOM05D005878 ORTHO05D007433 9.2e-61 237.7 200 69.0
Carub.0006s0594 Capsella rubella HOM05D005878 ORTHO05D007433 1.6e-60 236.9 165 73.9
THA.LOC104799332 Tarenaya hassleriana HOM05D005878 ORTHO05D007433 1.6e-60 236.9 228 61.4
Ciclev10002378m.g Citrus clementina HOM05D005878 ORTHO05D007433 2.0e-60 236.5 233 59.2
Cc00_g09800 Coffea canephora HOM05D005878 ORTHO05D007433 2.0e-60 236.5 212 65.6
PGSC0003DMG400003288 Solanum tuberosum HOM05D005878 ORTHO05D007433 2.0e-60 236.5 207 62.8
Sc14g0005230 Simmondsia chinensis HOM05D005878 ORTHO05D007433 2.7e-60 236.1 231 60.6
Sopen01g040380 Solanum pennellii HOM05D005878 ORTHO05D007433 2.7e-60 236.1 197 66.5
CARHR206130 Cardamine hirsuta HOM05D005878 ORTHO05D007433 3.5e-60 235.7 167 73.1
TAR636G2836 Trochodendron aralioides HOM05D005878 ORTHO05D007433 3.5e-60 235.7 222 62.6
CSS0046372 Camellia sinensis var. sinensis HOM05D005878 ORTHO05D007433 5.9e-60 235.0 184 71.2
Nn7g36933 Nelumbo nucifera HOM05D005878 ORTHO05D007433 7.8e-60 234.6 236 60.6
Actinidia01520 Actinidia chinensis HOM05D005878 ORTHO05D007433 1.7e-59 233.4 214 63.1
Dinv32002 Davidia involucrata HOM05D005878 ORTHO05D007433 2.3e-59 233.0 213 63.8
BcaC06g32524 Brassica carinata HOM05D005878 ORTHO05D007433 2.9e-59 232.6 216 59.7
Manes.11G008200 Manihot esculenta HOM05D005878 ORTHO05D007433 2.9e-59 232.6 207 65.2
Nitab4.5_0002838g0030 Nicotiana tabacum HOM05D005878 ORTHO05D007433 2.9e-59 232.6 152 79.6
TWI38G1150 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 3.9e-59 232.3 179 72.1
C02p02970 Brassica napus HOM05D005878 ORTHO05D007433 6.6e-59 231.5 216 60.2
Solyc01g096660.3 Solanum lycopersicum HOM05D005878 ORTHO05D007433 1.1e-58 230.7 235 57.9
Medtr3g013460 Medicago truncatula HOM05D005878 ORTHO05D007433 1.5e-58 230.3 197 67.0
Rhsim10G0180100 Rhododendron simsii HOM05D005878 ORTHO05D007433 1.5e-58 230.3 175 71.4
BcaB05g21635 Brassica carinata HOM05D005878 ORTHO05D007433 1.9e-58 229.9 204 61.8
BcaC03g13174 Brassica carinata HOM05D005878 ORTHO05D007433 1.9e-58 229.9 204 61.8
BcaNung04204 Brassica carinata HOM05D005878 ORTHO05D007433 1.9e-58 229.9 230 58.3
C09p69150 Brassica napus HOM05D005878 ORTHO05D007433 1.9e-58 229.9 230 58.3
BolC2t06258H Brassica oleracea HOM05D005878 ORTHO05D007433 1.9e-58 229.9 204 61.8
BolC9t59659H Brassica oleracea HOM05D005878 ORTHO05D007433 2.5e-58 229.6 230 58.3
A10p28810 Brassica napus HOM05D005878 ORTHO05D007433 4.3e-58 228.8 216 58.8
BraA10t44928Z Brassica rapa HOM05D005878 ORTHO05D007433 5.6e-58 228.4 216 58.8
Sp6g35860 Schrenkiella parvula HOM05D005878 ORTHO05D007433 7.3e-58 228.0 227 59.0
Duzib114G0830 Durio zibethinus HOM05D005878 ORTHO05D007433 1.2e-57 227.3 219 60.3
Aqoxy2G00498 Aquilegia oxysepala HOM05D005878 ORTHO05D007433 2.1e-57 226.5 192 67.2
MBI03_g46805_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 2.1e-57 226.5 217 59.0
ClCG05G027000 Citrullus lanatus HOM05D005878 ORTHO05D007433 3.6e-57 225.7 216 59.7
MBI03_g45113_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 3.6e-57 225.7 217 59.0
Nitab4.5_0004168g0090 Nicotiana tabacum HOM05D005878 ORTHO05D007433 4.7e-57 225.3 182 68.1
Peaxi162Scf00220g00235 Petunia axillaris HOM05D005878 ORTHO05D007433 4.7e-57 225.3 204 64.2
Migut.B01182 Erythranthe guttata HOM05D005878 ORTHO05D007433 1.0e-56 224.2 182 67.0
CsaV3_5G036960 Cucumis sativus L. HOM05D005878 ORTHO05D007433 1.8e-56 223.4 218 56.9
MELO3C012494.2 Cucumis melo HOM05D005878 ORTHO05D007433 3.1e-56 222.6 211 60.2
DCAR_006594 Daucus carota HOM05D005878 ORTHO05D007433 1.2e-55 220.7 252 54.4
TWI15G0528 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 1.2e-55 220.7 233 58.8
Oeu006783.1 Olea europaea HOM05D005878 ORTHO05D007433 1.5e-55 220.3 195 63.1
Sed0004070 Sechium edule HOM05D005878 ORTHO05D007433 4.4e-55 218.8 216 59.3
Potri.003G192800 Populus trichocarpa HOM05D005878 ORTHO05D007433 1.3e-54 217.2 212 60.4
ATR1136G020 Amborella trichopoda HOM05D005878 ORTHO05D007433 4.9e-54 215.3 186 63.4
EL10Ac2g02748 Beta vulgaris HOM05D005878 ORTHO05D007433 1.1e-53 214.2 160 71.2
SalBow2G2419 Salvia bowleyana HOM05D005878 ORTHO05D007433 1.1e-53 214.2 211 62.1
SalBow2G0433 Salvia bowleyana HOM05D005878 ORTHO05D007433 1.4e-53 213.8 195 64.6
PSO339G1146 Papaver somniferum HOM05D005878 ORTHO05D007433 3.2e-53 212.6 211 58.8
vmacro20585 Vaccinium macrocarpon HOM05D005878 ORTHO05D007433 4.1e-53 212.2 221 57.0
BraA02t04902Z Brassica rapa HOM05D005878 ORTHO05D007433 7.0e-53 211.5 195 62.6
AUR62032609 Chenopodium quinoa HOM05D005878 ORTHO05D007433 7.0e-53 211.5 151 74.2
unitig_22.g5332 Utricularia gibba HOM05D005878 ORTHO05D007433 9.2e-53 211.1 211 59.2
PSO384G4469 Papaver somniferum HOM05D005878 ORTHO05D007433 1.2e-52 210.7 211 57.8
ECA248G2695 Erigeron canadensis HOM05D005878 ORTHO05D007433 1.6e-52 210.3 224 58.9
MSTRG.16973 Avicennia marina HOM05D005878 ORTHO05D007433 1.3e-51 207.2 211 57.3
Lsat_1_v5_gn_9_74980 Lactuca sativa HOM05D005878 ORTHO05D007433 1.9e-50 203.4 247 53.0
HanXRQChr11g0341301 Helianthus annuus HOM05D005878 ORTHO05D007433 2.5e-50 203.0 215 58.6
HPP92_016121 Vanilla planifolia HOM05D005878 ORTHO05D007433 4.3e-50 202.2 226 54.9
GSVIVG01036595001 Vitis vinifera HOM05D005878 ORTHO05D007433 7.3e-50 201.4 209 57.9
Atru.chr12.1246 Acer truncatum HOM05D005878 ORTHO05D007433 5.2e-48 195.3 218 58.3
CDE08G0208 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 4.4e-47 192.2 182 59.9
Aa31sc25G160 Aethionema arabicum HOM05D005878 ORTHO05D007433 1.3e-46 190.7 132 72.7
TPR.G1450 Trifolium pratense HOM05D005878 ORTHO05D007433 2.9e-46 189.5 138 73.2
Zm00001eb182020 Zea mays HOM05D005878 ORTHO05D007433 3.7e-46 189.1 173 60.7
Lj9A656G41 Lonicera japonica HOM05D005878 ORTHO05D007433 1.4e-45 187.2 162 67.3
Hma1.2p1_0233F.1_g098360 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 2.4e-45 186.4 137 70.8
Os02g0556800 Oryza sativa ssp. japonica HOM05D005878 ORTHO05D007433 4.1e-45 185.7 173 61.3
AUR62001069 Chenopodium quinoa HOM05D005878 ORTHO05D007433 7.0e-45 184.9 141 70.9
SGA_v2.0_scaffold430G51553 Striga asiatica HOM05D005878 ORTHO05D007433 1.2e-44 184.1 130 71.5
AagrBONN_evm.TU.Sc2ySwM_117.1283 Anthoceros agrestis HOM05D005878 ORTHO05D007433 1.7e-43 180.3 168 56.5
Cpa.g.sc188.4 Carica papaya HOM05D005878 ORTHO05D007433 1.7e-43 180.3 118 80.5
SEGI_13955 Sequoiadendron giganteum HOM05D005878 ORTHO05D007433 5.1e-43 178.7 207 52.7
CDE02G0435 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 1.5e-42 177.2 198 55.1
AagrBONN_evm.TU.Sc2ySwM_117.450 Anthoceros agrestis HOM05D005878 ORTHO05D007433 4.3e-42 175.6 172 54.7
Mapoly0116s0014 Marchantia polymorpha HOM05D005878 ORTHO05D007433 8.1e-41 171.4 181 55.2
A03p56860 Brassica napus HOM05D005878 ORTHO05D007433 4.9e-38 162.2 133 68.4
Psat5g223120 Pisum sativum HOM05D005878 ORTHO05D007433 8.3e-38 161.4 170 58.8
Pp3c8_5370 Physcomitrium patens HOM05D005878 ORTHO05D007433 6.0e-36 155.2 173 53.2
Hma1.2p1_0233F.1_g098370 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 1.7e-35 153.7 111 73.0
Pp3c3_32790 Physcomitrium patens HOM05D005878 ORTHO05D007433 2.5e-34 149.8 171 51.5
SMO143G0125 Selaginella moellendorffii HOM05D005878 ORTHO05D007433 2.8e-33 146.4 141 57.4
TAR628G0990 Trochodendron aralioides HOM05D005878 ORTHO05D007433 3.0e-27 126.3 167 52.1
Eucgr.L03611 Eucalyptus grandis HOM05D005878 ORTHO05D007433 2.1e-25 120.2 84 71.4
BcaC03g13176 Brassica carinata HOM05D005878 ORTHO05D007433 4.8e-25 119.0 66 83.3
AUR62031722 Chenopodium quinoa HOM05D005878 ORTHO05D007433 4.0e-24 115.9 165 47.3
Atru.chr2.3038 Acer truncatum HOM05D005878 ORTHO05D007433 4.3e-18 95.9 100 63.0
CBR_g50344 Chara braunii HOM05D005878 ORTHO05D007433 4.8e-17 92.4 236 31.8
Potri.001G032200 Populus trichocarpa HOM05D005878 ORTHO05D007433 1.3e-14 84.3 231 34.6
Atru.chr3.2623 Acer truncatum HOM05D005878 ORTHO05D007433 4.6e-12 75.9 82 59.8
Atru.chr7.1915 Acer truncatum HOM05D005878 ORTHO05D007433 7.9e-12 75.1 106 48.1
PGSC0003DMG400040390 Solanum tuberosum HOM05D005878 ORTHO05D007433 2.4e-08 63.5 45 68.9


User provided reference genes

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