Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 1.2e-106 389.8 192 100.0
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.2e-106 389.8 192 100.0
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.2e-106 389.8 192 100.0
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 3.5e-106 388.3 192 99.5
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.5e-104 382.9 189 99.5
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 1.6e-103 379.4 189 97.4
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 6.2e-103 377.5 189 96.8
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 8.1e-103 377.1 189 97.4
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 1.4e-102 376.3 189 96.3
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 1.4e-102 376.3 189 96.3
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 3.1e-102 375.2 189 95.2
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 3.1e-102 375.2 189 95.8
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 5.2e-102 374.4 189 95.2
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 6.8e-102 374.0 189 95.8
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 6.8e-102 374.0 189 96.8
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 1.2e-101 373.2 189 95.2
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 2.6e-101 372.1 189 95.2
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 3.4e-101 371.7 189 95.8
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 4.4e-101 371.3 189 94.2
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 4.4e-101 371.3 189 94.7
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 4.4e-101 371.3 189 94.7
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 7.6e-101 370.5 189 94.2
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 9.9e-101 370.2 189 93.1
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.3e-100 369.8 189 93.7
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 1.3e-100 369.8 189 93.7
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 1.3e-100 369.8 189 93.7
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 2.2e-100 369.0 189 94.7
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 3.8e-100 368.2 190 93.2
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 4.9e-100 367.9 189 93.7
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 4.9e-100 367.9 188 92.6
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 4.9e-100 367.9 189 95.2
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 6.4e-100 367.5 189 93.7
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 8.4e-100 367.1 189 93.1
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 8.4e-100 367.1 189 93.1
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 8.4e-100 367.1 189 93.1
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 8.4e-100 367.1 189 93.1
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 1.1e-99 366.7 190 92.1
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 1.1e-99 366.7 188 94.7
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 1.1e-99 366.7 192 93.2
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 1.4e-99 366.3 189 93.7
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 1.9e-99 365.9 188 93.1
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 1.9e-99 365.9 189 94.2
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 2.4e-99 365.5 189 93.7
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 5.4e-99 364.4 189 92.1
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 7.1e-99 364.0 189 94.7
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 7.1e-99 364.0 190 92.1
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 9.2e-99 363.6 188 93.1
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 9.2e-99 363.6 189 93.1
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 1.2e-98 363.2 188 92.0
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 1.2e-98 363.2 195 92.3
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 1.6e-98 362.8 212 85.8
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 1.6e-98 362.8 189 92.6
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.6e-98 362.8 189 92.6
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 2.1e-98 362.5 189 91.5
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 3.5e-98 361.7 189 91.0
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 4.6e-98 361.3 190 91.1
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 6.0e-98 360.9 189 92.1
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 7.8e-98 360.5 189 92.6
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 1.0e-97 360.1 190 92.1
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 1.0e-97 360.1 189 93.1
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 1.0e-97 360.1 189 91.0
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 1.0e-97 360.1 189 91.0
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 1.0e-97 360.1 189 91.0
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 1.3e-97 359.8 189 91.0
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 2.3e-97 359.0 189 92.6
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 2.3e-97 359.0 191 90.6
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 3.0e-97 358.6 216 82.9
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 3.0e-97 358.6 188 91.0
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 6.6e-97 357.5 189 91.0
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 8.7e-97 357.1 203 87.7
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 1.9e-96 355.9 188 93.1
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 4.3e-96 354.8 201 88.1
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 5.6e-96 354.4 189 89.9
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 7.3e-96 354.0 189 88.9
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 7.3e-96 354.0 189 89.4
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 7.3e-96 354.0 196 88.8
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 2.1e-95 352.4 192 87.5
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 2.8e-95 352.1 189 88.4
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 6.2e-95 350.9 190 88.4
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 1.1e-94 350.1 230 78.3
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 2.4e-94 349.0 189 86.2
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 2.4e-94 349.0 189 87.8
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 2.4e-94 349.0 214 81.8
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 9.0e-94 347.1 183 91.3
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 9.0e-94 347.1 193 88.6
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 2.6e-93 345.5 188 86.7
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 3.4e-93 345.1 188 86.7
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 4.4e-93 344.7 189 86.2
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 7.6e-93 344.0 188 86.2
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 9.9e-93 343.6 188 86.2
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 1.3e-92 343.2 189 84.7
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 1.3e-92 343.2 189 85.2
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 1.3e-92 343.2 188 85.6
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 1.7e-92 342.8 189 85.7
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 8.4e-92 340.5 188 86.2
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.1e-90 335.9 189 82.0
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 6.0e-90 334.3 189 81.5
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.0e-89 333.6 183 89.6
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.0e-89 333.6 183 89.6
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 3.9e-89 331.6 189 80.4
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 3.9e-89 331.6 189 81.0
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 1.3e-87 326.6 171 91.2
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 6.2e-87 324.3 191 77.5
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 1.1e-86 323.6 189 78.3
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 1.1e-86 323.6 169 93.5
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 9.0e-86 320.5 171 87.1
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 4.5e-85 318.2 189 81.0
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 5.8e-85 317.8 188 77.7
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.3e-84 316.6 160 95.0
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 3.2e-83 312.0 160 93.8
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 4.3e-80 301.6 163 90.8
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 1.3e-79 300.1 160 90.0
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 9.3e-75 283.9 174 81.6
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 4.3e-72 275.0 209 67.9
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 5.5e-67 258.1 188 67.0
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 4.3e-64 248.4 140 87.1
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.4e-61 238.8 188 62.8
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 5.0e-60 235.0 183 61.7
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.8e-57 226.5 210 52.9
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 2.5e-56 222.6 149 73.8
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.3e-55 220.3 112 92.0
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 1.7e-55 219.9 129 85.3
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 2.4e-54 216.1 109 98.2
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 2.2e-52 209.5 158 67.1
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 1.4e-51 206.8 112 87.5
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 7.2e-51 204.5 109 91.7
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 1.2e-50 203.8 106 86.8
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 2.1e-50 203.0 109 90.8
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 3.3e-40 169.1 80 97.5
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 9.7e-40 167.5 80 96.2
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 4.8e-39 165.2 80 96.2
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.4e-38 163.7 80 93.8
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 4.5e-37 158.7 84 91.7
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 2.9e-36 156.0 81 86.4
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 3.2e-35 152.5 81 92.6
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 4.7e-34 148.7 72 94.4
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.0e-33 147.5 155 47.7
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 1.3e-31 140.6 69 94.2
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 5.3e-30 135.2 69 87.0
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 2.0e-29 133.3 87 81.6
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 2.1e-26 123.2 68 82.4
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 1.0e-25 120.9 68 80.9
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 1.0e-25 120.9 68 80.9
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 7.2e-19 98.2 51 84.3
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 8.0e-18 94.7 47 89.4
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 5.0e-12 75.5 38 86.8
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 5.0e-12 75.5 38 86.8
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 5.0e-12 75.5 38 86.8
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 5.0e-12 75.5 38 86.8
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 8.6e-12 74.7 37 89.2


User provided reference genes

Program Settings