Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g01110 Fragaria vesca HOM05D006852 ORTHO05D008585 1.0e-118 430.3 246 100.0
FAN06G4754 Fragaria x ananassa HOM05D006852 ORTHO05D008585 3.3e-117 425.2 248 99.2
FAN03G0769 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.7e-103 379.0 300 69.0
RcHm_v2.0_Chr1g0316111 Rosa chinensis HOM05D006852 ORTHO05D008585 3.3e-101 372.1 247 89.5
MD07G1011200 Malus domestica HOM05D006852 ORTHO05D008585 5.5e-96 354.8 248 81.9
FAN01G0182 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.1e-93 347.1 417 57.3
CiPaw.14G000200 Carya illinoinensis HOM05D006852 ORTHO05D008585 5.7e-93 344.7 248 76.2
FAN10G4066 Fragaria x ananassa HOM05D006852 ORTHO05D008585 6.3e-92 341.3 170 98.2
Lj3g0018236 Lotus japonicus HOM05D006852 ORTHO05D008585 1.1e-91 340.5 248 74.2
Manes.07G006500 Manihot esculenta HOM05D006852 ORTHO05D008585 1.8e-91 339.7 246 80.9
Cfa010769 Carpinus fangiana HOM05D006852 ORTHO05D008585 4.1e-91 338.6 247 74.1
Prupe.2G014400 Prunus persica HOM05D006852 ORTHO05D008585 2.0e-90 336.3 180 89.4
Glyma.13G202400 Glycine max HOM05D006852 ORTHO05D008585 3.8e-89 332.0 248 73.0
COL.COLO4_31169 Corchorus olitorius HOM05D006852 ORTHO05D008585 5.0e-89 331.6 247 78.1
Nn7g36210 Nelumbo nucifera HOM05D006852 ORTHO05D008585 5.0e-89 331.6 247 77.7
Sed0010309 Sechium edule HOM05D006852 ORTHO05D008585 6.5e-89 331.3 246 78.9
Potri.001G266200 Populus trichocarpa HOM05D006852 ORTHO05D008585 8.5e-89 330.9 246 67.1
Ciclev10032186m.g Citrus clementina HOM05D006852 ORTHO05D008585 1.1e-88 330.5 186 83.3
ECA248G0614 Erigeron canadensis HOM05D006852 ORTHO05D008585 2.5e-88 329.3 244 72.5
Gohir.A08G144200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 4.2e-88 328.6 250 77.6
CANSAT80G1911 Cannabis sativa HOM05D006852 ORTHO05D008585 1.2e-87 327.0 250 78.0
Dinv09352 Davidia involucrata HOM05D006852 ORTHO05D008585 1.2e-87 327.0 248 71.4
Hma1.2p1_0293F.1_g116040 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 1.2e-87 327.0 248 72.2
Thecc.01G410400 Theobroma cacao HOM05D006852 ORTHO05D008585 2.7e-87 325.9 247 78.1
Eucgr.G03378 Eucalyptus grandis HOM05D006852 ORTHO05D008585 6.1e-87 324.7 257 65.0
TWI79G0862 Tripterygium wilfordii HOM05D006852 ORTHO05D008585 6.1e-87 324.7 250 78.0
MELO3C023552.2 Cucumis melo HOM05D006852 ORTHO05D008585 8.0e-87 324.3 246 74.8
Duzib138G0005 Durio zibethinus HOM05D006852 ORTHO05D008585 1.8e-86 323.2 246 71.5
arahy.Tifrunner.gnm1.ann1.5TR8MX Arachis hypogaea HOM05D006852 ORTHO05D008585 3.0e-86 322.4 186 80.6
Thhalv10026084m.g Eutrema salsugineum HOM05D006852 ORTHO05D008585 4.0e-86 322.0 245 77.6
Lsat_1_v5_gn_1_106940 Lactuca sativa HOM05D006852 ORTHO05D008585 4.0e-86 322.0 246 70.7
QL04p006320 Quercus lobata HOM05D006852 ORTHO05D008585 4.0e-86 322.0 279 65.9
Nitab4.5_0000125g0260 Nicotiana tabacum HOM05D006852 ORTHO05D008585 5.2e-86 321.6 249 69.1
CAN.G857.11 Capsicum annuum HOM05D006852 ORTHO05D008585 8.8e-86 320.9 246 64.2
Atru.chr11.2623 Acer truncatum HOM05D006852 ORTHO05D008585 1.1e-85 320.5 185 82.7
THA.LOC104801980 Tarenaya hassleriana HOM05D006852 ORTHO05D008585 1.1e-85 320.5 245 65.3
Psat4g148920 Pisum sativum HOM05D006852 ORTHO05D008585 1.5e-85 320.1 250 76.0
Medtr8g037265 Medicago truncatula HOM05D006852 ORTHO05D008585 3.3e-85 318.9 250 77.6
CsaV3_7G031040 Cucumis sativus L. HOM05D006852 ORTHO05D008585 4.4e-85 318.5 255 72.5
Glyma.12G236900 Glycine max HOM05D006852 ORTHO05D008585 5.7e-85 318.2 186 80.1
Nitab4.5_0006579g0050 Nicotiana tabacum HOM05D006852 ORTHO05D008585 5.7e-85 318.2 250 69.2
CARHR221730 Cardamine hirsuta HOM05D006852 ORTHO05D008585 7.5e-85 317.8 245 76.3
HanXRQChr01g0015721 Helianthus annuus HOM05D006852 ORTHO05D008585 2.2e-84 316.2 244 70.5
EL10Ac2g04333 Beta vulgaris HOM05D006852 ORTHO05D008585 4.8e-84 315.1 187 78.6
Phvul.011G211400 Phaseolus vulgaris HOM05D006852 ORTHO05D008585 1.1e-83 313.9 180 81.7
Sp7g13213 Schrenkiella parvula HOM05D006852 ORTHO05D008585 1.1e-83 313.9 245 75.5
Lalb_Chr03g0034091 Lupinus albus HOM05D006852 ORTHO05D008585 1.4e-83 313.5 180 83.3
Carub.0007s2707 Capsella rubella HOM05D006852 ORTHO05D008585 2.4e-83 312.8 245 74.7
Gorai.004G172200 Gossypium raimondii HOM05D006852 ORTHO05D008585 3.1e-83 312.4 178 82.0
PSO339G6046 Papaver somniferum HOM05D006852 ORTHO05D008585 1.2e-82 310.5 281 63.7
Gohir.D08G165200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 2.0e-82 309.7 178 81.5
PSO384G4724 Papaver somniferum HOM05D006852 ORTHO05D008585 2.0e-82 309.7 281 65.5
Peaxi162Scf00339g00115 Petunia axillaris HOM05D006852 ORTHO05D008585 2.0e-82 309.7 182 78.0
AT4G15030 Arabidopsis thaliana HOM05D006852 ORTHO05D008585 3.5e-82 308.9 182 79.1
Solyc04g074660.3 Solanum lycopersicum HOM05D006852 ORTHO05D008585 1.7e-81 306.6 182 78.6
BcaNung00310 Brassica carinata HOM05D006852 ORTHO05D008585 3.8e-81 305.4 245 75.1
Sopen04g029630 Solanum pennellii HOM05D006852 ORTHO05D008585 5.0e-81 305.1 182 78.0
AL7G40800 Arabidopsis lyrata HOM05D006852 ORTHO05D008585 6.5e-81 304.7 277 66.8
PGSC0003DMG400030817 Solanum tuberosum HOM05D006852 ORTHO05D008585 6.5e-81 304.7 187 75.4
Actinidia31067 Actinidia chinensis HOM05D006852 ORTHO05D008585 8.5e-81 304.3 179 81.0
Aqoxy1G00289 Aquilegia oxysepala HOM05D006852 ORTHO05D008585 1.5e-80 303.5 246 74.8
ATR0332G098 Amborella trichopoda HOM05D006852 ORTHO05D008585 2.5e-80 302.8 243 72.8
BcaC09g50182 Brassica carinata HOM05D006852 ORTHO05D008585 2.5e-80 302.8 245 73.1
PGR031G2977 Punica granatum HOM05D006852 ORTHO05D008585 7.2e-80 301.2 255 70.2
C01p28040 Brassica napus HOM05D006852 ORTHO05D008585 1.6e-79 300.1 245 71.8
A01p22510 Brassica napus HOM05D006852 ORTHO05D008585 4.7e-79 298.5 245 71.4
Aa31LG9G2320 Aethionema arabicum HOM05D006852 ORTHO05D008585 8.0e-79 297.7 275 66.2
vmacro13669 Vaccinium macrocarpon HOM05D006852 ORTHO05D008585 1.4e-78 297.0 300 59.7
BolC1t02738H Brassica oleracea HOM05D006852 ORTHO05D008585 1.8e-78 296.6 249 66.7
AUR62023069 Chenopodium quinoa HOM05D006852 ORTHO05D008585 2.3e-78 296.2 218 64.7
Oeu010800.1 Olea europaea HOM05D006852 ORTHO05D008585 1.2e-77 293.9 168 81.5
ClCG09G004140 Citrullus lanatus HOM05D006852 ORTHO05D008585 2.0e-77 293.1 313 60.1
HPP92_009588 Vanilla planifolia HOM05D006852 ORTHO05D008585 1.3e-76 290.4 246 65.0
Sc10g0000090 Simmondsia chinensis HOM05D006852 ORTHO05D008585 6.3e-76 288.1 167 80.8
Zm00001eb115340 Zea mays HOM05D006852 ORTHO05D008585 6.3e-76 288.1 179 75.4
Rhsim07G0056000 Rhododendron simsii HOM05D006852 ORTHO05D008585 2.4e-75 286.2 179 77.1
SEGI_37436 Sequoiadendron giganteum HOM05D006852 ORTHO05D008585 1.2e-74 283.9 181 73.5
unitig_747.g22049 Utricularia gibba HOM05D006852 ORTHO05D008585 7.7e-74 281.2 249 63.9
Sabra16G0163300 Salix brachista HOM05D006852 ORTHO05D008585 2.5e-72 276.2 294 53.1
BraA01t02166Z Brassica rapa HOM05D006852 ORTHO05D008585 2.1e-71 273.1 306 51.6
Os11g0639000 Oryza sativa ssp. japonica HOM05D006852 ORTHO05D008585 1.2e-69 267.3 167 73.7
SHI04066 Sapria himalayana HOM05D006852 ORTHO05D008585 1.5e-69 266.9 242 59.9
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 3.4e-69 265.8 212 63.2
TPR.G1866 Trifolium pratense HOM05D006852 ORTHO05D008585 1.1e-67 260.8 150 82.7
AUR62009387 Chenopodium quinoa HOM05D006852 ORTHO05D008585 1.4e-67 260.4 201 64.2
Cc02_g28030 Coffea canephora HOM05D006852 ORTHO05D008585 1.2e-66 257.3 148 79.7
VMungo1127G1814 Vigna mungo HOM05D006852 ORTHO05D008585 1.6e-66 256.9 145 82.1
Mapoly0009s0102 Marchantia polymorpha HOM05D006852 ORTHO05D008585 1.3e-65 253.8 180 65.6
Pp3c2_10540 Physcomitrium patens HOM05D006852 ORTHO05D008585 1.5e-64 250.4 187 63.6
SGA_v2.0_scaffold161G37817 Striga asiatica HOM05D006852 ORTHO05D008585 4.3e-64 248.8 201 64.2
TAR633G0701 Trochodendron aralioides HOM05D006852 ORTHO05D008585 1.6e-63 246.9 146 77.4
AagrBONN_evm.TU.Sc2ySwM_228.2602 Anthoceros agrestis HOM05D006852 ORTHO05D008585 5.7e-61 238.4 187 60.4
Hund18974 Selenicereus undatus HOM05D006852 ORTHO05D008585 2.7e-58 229.6 285 48.1
CSS0037243 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 7.8e-58 228.0 281 58.7
CSS0019030 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 5.0e-57 225.3 256 62.9
MBI04_g36071_MAGBIO Magnolia biondii HOM05D006852 ORTHO05D008585 7.3e-56 221.5 250 54.0
arahy.Tifrunner.gnm1.ann1.2WG9D2 Arachis hypogaea HOM05D006852 ORTHO05D008585 2.1e-55 219.9 349 39.0
SalBow6G4338 Salvia bowleyana HOM05D006852 ORTHO05D008585 1.8e-54 216.9 265 46.4
Hma1.2p1_0293F.1_g116050 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 3.7e-52 209.1 125 78.4
Haze_03202 Corylus avellana HOM05D006852 ORTHO05D008585 1.1e-51 207.6 154 68.2
GSVIVG01032100001 Vitis vinifera HOM05D006852 ORTHO05D008585 1.4e-51 207.2 169 78.7
Cre07.g336250 Chlamydomonas reinhardtii HOM05D006852 ORTHO05D008585 9.2e-51 204.5 188 53.2
SalBow6G3774 Salvia bowleyana HOM05D006852 ORTHO05D008585 2.7e-50 203.0 131 72.5
Oeu049501.1 Olea europaea HOM05D006852 ORTHO05D008585 1.1e-43 181.0 115 76.5
Migut.N01601 Erythranthe guttata HOM05D006852 ORTHO05D008585 3.6e-39 166.0 98 80.6
SMO239G0058 Selaginella moellendorffii HOM05D006852 ORTHO05D008585 4.7e-39 165.6 113 65.5
CBR_g4609 Chara braunii HOM05D006852 ORTHO05D008585 1.4e-38 164.1 128 61.7
MD02G1310300 Malus domestica HOM05D006852 ORTHO05D008585 8.9e-38 161.4 145 61.4
CDE02G4017 Ceratophyllum demersum HOM05D006852 ORTHO05D008585 2.0e-29 133.7 81 76.5
QL11p002033 Quercus lobata HOM05D006852 ORTHO05D008585 3.2e-27 126.3 107 60.7
QL11p002055 Quercus lobata HOM05D006852 ORTHO05D008585 9.3e-27 124.8 167 62.9
QL11p001483 Quercus lobata HOM05D000005 ORTHO05D000012 3.4e-21 106.3 112 51.8
C03p92530 Brassica napus HOM05D006852 ORTHO05D008585 1.3e-17 94.4 122 63.1
Cc02_g28050 Coffea canephora HOM05D006852 ORTHO05D008585 6.7e-09 65.5 102 53.9
CDE02G1038 Ceratophyllum demersum HOM05D005011 ORTHO05D006443 2.5e-08 63.5 39 71.8
Migut.N01602 Erythranthe guttata HOM05D006852 ORTHO05D008585 3.7e-07 59.7 34 73.5
Ca_23889_v3 Cicer arietinum L. HOM05D006852 ORTHO05D008585 8.1e-07 58.5 29 93.1


User provided reference genes

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