Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 8.2e-45 183.3 92 100.0
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.5e-42 173.7 89 98.9
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.0e-39 166.4 89 95.5
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-35 152.9 122 71.3
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 1.2e-30 136.3 93 78.5
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.4e-20 102.1 80 60.0
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 9.1e-20 100.1 98 53.1
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.7e-19 98.6 98 52.0
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 3.5e-19 98.2 96 55.2
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.2e-18 95.5 86 53.5
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 3.8e-18 94.7 95 49.5
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 1.9e-17 92.4 116 42.2
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.2e-16 89.7 83 54.2
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 1.2e-16 89.7 91 53.8
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 4.7e-16 87.8 93 51.6
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.0e-16 87.0 59 61.0
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 1.8e-15 85.9 85 51.8
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 2.3e-15 85.5 84 58.3
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.8e-15 83.6 83 51.8
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.8e-15 83.6 83 51.8
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.2e-14 83.2 83 53.0
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 1.5e-14 82.8 95 45.3
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 4.4e-14 81.3 96 53.1
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 5.7e-14 80.9 96 45.8
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.7e-13 79.3 90 43.3
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.7e-13 79.3 90 44.4
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.7e-13 79.3 90 44.4
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 1.7e-13 79.3 83 50.6
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.7e-13 79.3 94 48.9
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 2.2e-13 79.0 82 48.8
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 6.3e-13 77.4 88 47.7
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 6.3e-13 77.4 97 51.5
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 8.3e-13 77.0 67 53.7
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.1e-12 76.6 82 46.3
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 1.8e-12 75.9 83 50.6
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.8e-12 75.9 83 51.8
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 1.8e-12 75.9 81 46.9
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 2.4e-12 75.5 83 50.6
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 2.4e-12 75.5 78 46.2
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 3.1e-12 75.1 87 46.0
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 3.1e-12 75.1 84 46.4
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 4.1e-12 74.7 80 46.2
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 4.1e-12 74.7 85 42.4
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 5.4e-12 74.3 85 48.2
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.2e-12 73.6 83 49.4
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 9.2e-12 73.6 97 44.3
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 9.2e-12 73.6 80 45.0
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 9.2e-12 73.6 97 44.3
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 9.2e-12 73.6 83 47.0
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 9.2e-12 73.6 83 45.8
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.6e-11 72.8 92 45.7
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.6e-11 72.8 86 47.7
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 1.6e-11 72.8 83 48.2
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 2.0e-11 72.4 94 45.7
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 2.0e-11 72.4 94 45.7
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.0e-11 72.4 97 42.3
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 2.0e-11 72.4 82 48.8
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 2.7e-11 72.0 82 41.5
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 2.7e-11 72.0 93 44.1
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 2.7e-11 72.0 88 48.9
FAN18G0797 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.7e-11 72.0 93 51.6
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.7e-11 72.0 79 46.8
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.7e-11 72.0 85 45.9
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 3.5e-11 71.6 84 46.4
FvH4_5g34304 Fragaria vesca HOM05D003712 ORTHO05D004368 3.5e-11 71.6 80 52.5
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-11 71.6 65 49.2
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 4.5e-11 71.2 75 48.0
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 5.9e-11 70.9 81 45.7
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 5.9e-11 70.9 81 45.7
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 7.8e-11 70.5 86 44.2
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.8e-11 70.5 86 44.2
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.8e-11 70.5 81 45.7
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.8e-11 70.5 81 40.7
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.0e-10 70.1 90 43.3
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 1.0e-10 70.1 93 44.1
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 1.0e-10 70.1 51 60.8
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 1.3e-10 69.7 78 44.9
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 1.7e-10 69.3 79 44.3
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.3e-10 68.9 99 44.4
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.3e-10 68.9 83 43.4
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 2.3e-10 68.9 84 41.7
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 2.9e-10 68.6 82 39.0
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 2.9e-10 68.6 89 46.1
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 2.9e-10 68.6 83 45.8
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 2.9e-10 68.6 84 41.7
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 5.0e-10 67.8 92 44.6
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 5.0e-10 67.8 100 41.0
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.0e-10 67.8 88 42.0
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 6.6e-10 67.4 84 40.5
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.6e-10 67.4 54 57.4
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 6.6e-10 67.4 82 42.7
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 6.6e-10 67.4 72 44.4
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 8.6e-10 67.0 91 42.9
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 1.1e-09 66.6 61 50.8
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 1.1e-09 66.6 99 40.4
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.1e-09 66.6 82 41.5
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.1e-09 66.6 92 38.0
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 1.1e-09 66.6 81 42.0
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 1.5e-09 66.2 80 42.5
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.5e-09 66.2 90 44.4
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 1.5e-09 66.2 81 42.0
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.9e-09 65.9 79 45.6
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.9e-09 65.9 79 45.6
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 2.5e-09 65.5 80 43.8
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 2.5e-09 65.5 80 46.2
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 2.5e-09 65.5 83 42.2
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.5e-09 65.5 94 40.4
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.3e-09 65.1 78 43.6
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.3e-09 65.1 82 46.3
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 4.3e-09 64.7 81 46.9
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 4.3e-09 64.7 80 38.8
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 5.6e-09 64.3 53 50.9
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.6e-09 64.3 76 44.7
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 5.6e-09 64.3 88 38.6
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.6e-09 64.3 92 37.0
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 7.3e-09 63.9 80 40.0
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 7.3e-09 63.9 54 48.1
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 7.3e-09 63.9 87 35.6
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 9.5e-09 63.5 90 37.8
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.5e-09 63.5 90 40.0
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.5e-09 63.5 68 38.2
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 9.5e-09 63.5 80 42.5
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 1.2e-08 63.2 79 39.2
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.6e-08 62.8 84 44.0
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 1.6e-08 62.8 52 51.9
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 2.1e-08 62.4 54 48.1
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 2.1e-08 62.4 46 58.7
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 2.1e-08 62.4 82 41.5
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 2.1e-08 62.4 50 52.0
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 2.8e-08 62.0 49 53.1
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 2.8e-08 62.0 87 41.4
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 2.8e-08 62.0 87 41.4
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.8e-08 62.0 81 38.3
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.6e-08 61.6 80 38.8
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.6e-08 61.6 83 42.2
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 4.7e-08 61.2 72 40.3
FvH4_5g02870 Fragaria vesca HOM05D003712 ORTHO05D004368 4.7e-08 61.2 88 47.7
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 4.7e-08 61.2 50 52.0
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 4.7e-08 61.2 50 52.0
FAN18G2182 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.1e-08 60.8 88 47.7
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 6.1e-08 60.8 80 37.5
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 6.1e-08 60.8 80 40.0
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 8.0e-08 60.5 91 35.2
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 8.0e-08 60.5 78 38.5
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 8.0e-08 60.5 78 38.5
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 1.0e-07 60.1 80 37.5
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 1.0e-07 60.1 79 41.8
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 1.0e-07 60.1 87 40.2
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 1.0e-07 60.1 89 40.4
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 1.0e-07 60.1 78 38.5
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.4e-07 59.7 48 50.0
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 1.4e-07 59.7 50 48.0
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 1.4e-07 59.7 87 40.2
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 1.8e-07 59.3 83 34.9
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 1.8e-07 59.3 83 34.9
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 2.3e-07 58.9 89 31.5
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.0e-07 58.5 91 36.3
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 4.0e-07 58.2 81 39.5
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.2e-07 57.8 85 38.8
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 6.8e-07 57.4 43 55.8
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 8.9e-07 57.0 87 35.6
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.2e-06 56.6 88 37.5
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.2e-06 56.6 88 37.5
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.2e-06 56.6 94 39.4
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 1.2e-06 56.6 82 37.8
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 1.2e-06 56.6 82 34.1
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.5e-06 56.2 79 39.2
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 2.0e-06 55.8 52 44.2
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 2.6e-06 55.5 78 34.6
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.6e-06 55.5 79 34.2
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.6e-06 55.5 79 32.9
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 2.6e-06 55.5 96 33.3
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.4e-06 55.1 90 31.1
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 7.5e-06 53.9 48 45.8
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 7.5e-06 53.9 48 45.8


User provided reference genes

Program Settings