Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 0.0e+00 1602.8 780 100.0
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1602.8 780 100.0
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1597.4 780 99.7
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1578.5 780 98.3
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1536.2 780 95.6
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 0.0e+00 1357.8 785 83.7
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1341.6 785 82.7
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1338.6 784 82.5
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 0.0e+00 1258.8 780 78.2
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1243.4 783 77.1
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1242.3 783 77.1
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1241.9 784 76.7
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1238.8 784 76.5
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1224.9 786 76.1
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1166.8 775 73.9
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1143.6 785 71.1
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1140.9 785 71.1
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 0.0e+00 1134.8 785 71.0
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1133.2 796 71.2
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1130.9 773 71.8
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 0.0e+00 1129.8 829 68.4
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1127.9 781 71.6
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1127.1 773 71.9
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 0.0e+00 1124.0 789 70.7
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 0.0e+00 1121.7 785 70.8
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1120.9 774 71.6
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 0.0e+00 1120.5 775 71.2
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1118.6 774 71.4
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 0.0e+00 1109.0 786 69.6
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 0.0e+00 1102.8 780 70.3
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1102.0 782 69.2
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 0.0e+00 1101.7 764 71.6
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 0.0e+00 1101.3 790 69.7
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 0.0e+00 1100.5 806 69.2
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 0.0e+00 1099.7 789 69.3
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 0.0e+00 1097.4 788 68.7
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 0.0e+00 1094.0 785 68.7
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 0.0e+00 1088.2 773 69.9
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 0.0e+00 1087.4 785 69.3
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1085.1 775 69.3
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 0.0e+00 1085.1 774 69.6
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 0.0e+00 1083.2 775 68.3
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 0.0e+00 1082.8 774 69.6
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 0.0e+00 1082.4 775 68.8
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1082.0 783 68.5
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 0.0e+00 1080.1 774 69.4
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1079.7 775 69.0
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 0.0e+00 1076.2 781 68.1
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 5.3e-312 1074.7 774 68.5
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 5.3e-312 1074.3 774 68.9
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 4.8e-311 1070.8 781 67.5
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 1.8e-310 1068.9 774 68.5
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 2.0e-309 1065.4 774 68.6
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 2.6e-309 1065.1 774 68.6
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 3.4e-309 1064.7 787 67.2
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 3.4e-309 1064.7 780 68.2
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 9.9e-309 1063.1 775 68.4
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 1.1e-307 1059.7 775 68.5
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 1.1e-307 1059.7 774 67.4
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 5.5e-307 1057.4 774 68.6
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 7.1e-307 1057.0 790 67.0
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 1.2e-306 1056.2 775 67.7
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 4.6e-306 1054.3 774 68.7
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 1.0e-305 1053.1 764 67.5
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 1.0e-305 1053.1 774 67.7
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 2.3e-305 1052.0 785 67.0
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 4.3e-304 1047.7 774 67.8
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 2.1e-303 1045.4 779 67.3
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 2.1e-303 1045.4 774 69.0
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 4.8e-303 1044.3 783 66.2
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 1.8e-302 1042.3 771 66.1
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 5.3e-302 1040.8 775 66.8
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 5.3e-302 1040.8 737 69.3
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 9.0e-302 1040.0 774 67.2
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 5.8e-301 1037.3 775 66.5
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 3.2e-299 1031.6 780 65.1
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 5.5e-299 1030.8 780 65.1
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 5.5e-299 1030.8 783 65.5
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 9.3e-299 1030.0 776 67.0
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 3.5e-298 1028.1 774 66.1
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 1.8e-297 1025.8 777 66.5
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 1.1e-296 1023.1 776 65.3
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 4.8e-295 1017.7 751 67.5
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 5.3e-294 1014.2 773 65.5
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 5.3e-294 1014.2 787 65.2
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.2e-293 1013.1 774 65.2
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 8.5e-292 1006.9 774 65.1
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 3.2e-291 1005.0 804 62.7
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 9.3e-291 1003.4 779 65.3
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 1.2e-285 986.5 776 63.4
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 2.0e-285 985.7 774 64.6
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 2.6e-285 985.3 817 63.0
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 6.5e-284 980.7 777 64.5
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 1.4e-283 979.5 772 63.3
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 1.4e-283 979.5 776 63.0
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 4.2e-283 978.0 772 63.9
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 1.2e-282 976.5 773 63.4
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 1.2e-282 976.5 780 63.2
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 3.6e-282 974.9 774 64.1
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 3.6e-282 974.9 783 62.8
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 3.6e-282 974.9 777 64.0
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 1.0e-281 973.4 775 63.2
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 5.1e-281 971.1 774 62.9
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 1.1e-280 969.9 774 63.7
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 2.6e-280 968.8 767 63.6
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 2.6e-280 968.8 777 62.4
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 3.3e-280 968.4 777 62.4
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 1.7e-279 966.1 775 62.7
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 2.8e-279 965.3 775 62.8
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.1e-278 963.4 779 61.6
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 1.4e-278 963.0 776 62.8
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 4.1e-278 961.4 745 66.3
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 5.3e-278 961.1 776 62.2
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 5.3e-278 961.1 770 64.2
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 9.1e-278 960.3 774 62.4
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.4e-277 958.4 775 62.8
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 2.9e-276 955.3 737 64.9
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.0e-273 946.8 770 61.3
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 1.8e-270 936.0 782 59.1
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 2.2e-268 929.1 782 59.8
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 3.2e-267 925.2 791 60.7
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 6.1e-266 921.0 771 60.3
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 6.1e-266 921.0 720 64.6
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 4.4e-264 914.8 734 65.4
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 7.5e-264 914.1 780 59.9
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 1.7e-263 912.9 786 59.3
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 9.8e-256 887.1 771 58.4
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 1.3e-255 886.7 858 56.6
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 4.5e-253 878.2 775 59.2
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.0e-252 877.1 787 59.2
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 5.0e-252 874.8 779 58.8
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 2.5e-251 872.5 761 59.7
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 6.1e-250 867.8 770 57.9
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 1.8e-238 829.7 779 57.0
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 7.0e-238 827.8 779 56.9
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 1.8e-225 786.6 707 59.7
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.7e-223 780.0 733 56.1
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 1.4e-214 750.4 687 57.8
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 4.6e-181 639.0 772 45.5
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 1.3e-178 630.9 758 45.4
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 6.3e-178 628.6 734 45.8
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 2.4e-177 626.7 773 46.1
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 1.0e-175 621.3 399 74.7
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 1.0e-175 621.3 399 74.7
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.3e-175 620.9 775 44.5
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 1.1e-171 607.8 793 43.9
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 9.1e-169 598.2 445 66.5
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 1.2e-157 561.2 783 42.0
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 3.7e-154 549.7 418 66.3
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 1.6e-144 517.7 405 64.2
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 6.1e-141 505.8 573 46.9
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 9.8e-131 471.9 272 81.6
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 6.1e-125 452.6 459 54.2
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 7.3e-118 429.1 257 76.3
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.4e-113 414.8 442 48.4
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 9.5e-102 375.6 746 34.2
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 9.0e-76 289.3 267 55.4
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 1.1e-68 265.8 764 28.4
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 1.6e-61 241.9 281 48.8
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 4.2e-57 227.3 187 60.4
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 9.4e-49 199.5 152 65.1
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.5e-41 175.6 90 83.3
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.0e-39 167.9 76 97.4
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 5.3e-36 157.1 149 56.4
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.2e-25 120.9 162 41.4
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 9.8e-22 109.8 131 40.5
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 2.4e-12 78.6 73 50.7
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 7.0e-12 77.0 103 38.8
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 3.5e-11 74.7 108 40.7
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 5.0e-10 70.9 64 54.7
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 2.5e-09 68.6 101 38.6
MBI11_g27346_MAGBIO Magnolia biondii HOM05D000022 ORTHO05D025742 7.5e-06 57.0 27 96.3


User provided reference genes

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