Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 0.0e+00 1313.9 661 100.0
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 0.0e+00 1291.6 661 98.5
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 0.0e+00 1289.2 661 98.0
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 0.0e+00 1224.2 661 93.0
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 0.0e+00 1104.0 662 84.3
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 0.0e+00 1103.2 662 84.4
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 0.0e+00 1099.3 662 83.5
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 4.0e-303 1044.3 653 78.6
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 2.9e-301 1038.1 651 78.5
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 2.1e-299 1031.9 661 77.3
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 3.5e-299 1031.2 661 77.5
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 2.6e-294 1015.0 655 75.9
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 1.4e-287 992.6 662 74.5
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 2.6e-286 988.4 661 74.7
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 4.5e-286 987.6 649 75.2
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 1.0e-285 986.5 661 75.6
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 5.5e-284 980.7 662 74.3
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 9.4e-284 979.9 662 74.5
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 1.6e-283 979.2 658 74.2
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 2.1e-283 978.8 654 74.3
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 2.7e-283 978.4 648 73.9
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 6.1e-283 977.2 654 73.9
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 6.1e-283 977.2 662 73.7
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 5.7e-281 970.7 655 72.8
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 2.2e-280 968.8 656 74.5
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 1.8e-279 965.7 642 74.9
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 2.4e-279 965.3 654 74.0
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 2.0e-278 962.2 647 73.9
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 2.6e-278 961.8 662 73.6
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 4.5e-278 961.1 645 73.6
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 2.2e-277 958.7 659 71.8
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 2.9e-277 958.4 649 73.3
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 7.2e-276 953.7 658 72.3
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 3.6e-275 951.4 653 72.9
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 4.7e-275 951.0 653 72.1
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 5.2e-274 947.6 653 71.1
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 1.7e-272 942.6 650 73.1
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 1.4e-271 939.5 648 72.1
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 4.5e-270 934.5 649 72.0
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 3.8e-269 931.4 651 71.0
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 6.5e-269 930.6 614 75.1
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 2.5e-268 928.7 650 71.5
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 5.2e-266 921.0 654 70.0
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 7.5e-265 917.1 653 69.7
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 3.7e-264 914.8 660 69.8
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 8.3e-264 913.7 646 70.3
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 1.4e-263 912.9 662 70.7
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 7.0e-263 910.6 649 70.3
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 4.0e-258 894.8 647 69.4
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 8.8e-258 893.6 582 75.3
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 7.5e-257 890.6 653 68.6
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 9.8e-257 890.2 650 69.1
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 2.2e-256 889.0 648 69.6
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 6.3e-256 887.5 610 72.0
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 5.4e-255 884.4 644 69.3
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 2.0e-254 882.5 654 68.5
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 2.9e-253 878.6 649 67.6
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 3.3e-252 875.2 650 66.9
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 1.2e-249 866.7 657 67.9
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 2.0e-249 865.9 661 65.2
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 2.6e-249 865.5 661 65.2
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 4.9e-248 861.3 641 66.1
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 4.9e-248 861.3 641 66.1
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 1.8e-247 859.4 651 65.9
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 3.2e-247 858.6 641 65.8
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 1.2e-246 856.7 641 66.1
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 1.3e-245 853.2 646 68.1
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 1.7e-245 852.8 652 65.0
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 2.9e-245 852.0 641 66.3
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 3.9e-245 851.7 655 66.7
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 6.6e-245 850.9 653 66.3
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 1.1e-244 850.1 641 66.8
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 9.5e-244 847.0 641 65.2
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 2.1e-243 845.9 642 65.4
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 6.1e-243 844.3 642 64.8
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 2.3e-242 842.4 641 64.9
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 2.3e-242 842.4 659 64.9
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 1.3e-237 826.6 646 65.2
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 3.9e-237 825.1 647 65.4
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 1.2e-233 813.5 640 63.6
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 2.0e-233 812.8 638 64.1
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 4.1e-231 805.1 640 63.1
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 6.6e-229 797.7 649 64.1
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 1.9e-228 796.2 677 62.2
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 9.5e-228 793.9 640 62.3
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 2.6e-225 785.8 642 62.3
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 4.4e-225 785.0 525 73.5
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 9.2e-223 777.3 558 68.6
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 9.6e-220 767.3 647 62.9
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 2.0e-209 733.0 649 60.7
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 1.5e-201 706.8 556 65.6
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 3.4e-201 705.7 652 58.9
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 1.3e-197 693.7 620 60.0
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 9.6e-196 687.6 649 58.7
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 1.4e-194 683.7 676 56.1
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 1.9e-191 673.3 631 57.4
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 3.6e-174 615.9 580 57.4
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 4.8e-171 605.5 442 68.6
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 9.1e-170 601.3 497 62.0
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 3.9e-165 585.9 647 51.0
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 1.6e-161 573.9 640 49.1
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 9.4e-159 564.7 659 47.2
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 7.0e-154 548.5 651 45.3
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 1.6e-150 537.3 645 44.8
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 8.0e-126 455.3 226 97.8
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 1.9e-119 434.1 614 38.6
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 1.4e-93 348.2 339 55.8
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 3.1e-77 293.9 146 97.9
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 1.6e-49 201.8 282 44.3
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 4.7e-49 200.3 290 41.4
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 8.8e-48 196.1 156 64.1
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 3.7e-46 190.7 141 68.1
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 8.5e-43 179.5 198 51.5
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 1.1e-42 179.1 107 76.6
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 1.5e-42 178.7 160 58.1
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 9.4e-42 176.0 107 75.7
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 8.8e-40 169.5 155 60.0
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 8.2e-38 162.9 155 55.5
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 1.8e-37 161.8 166 54.8
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 3.1e-37 161.0 110 75.5
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 4.7e-33 147.1 94 77.7
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 2.0e-31 141.7 228 35.1
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 9.8e-31 139.4 85 74.1
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 1.2e-28 132.5 83 75.9
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.3e-27 129.0 102 60.8
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 1.9e-26 125.2 80 73.8
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 8.8e-24 116.3 101 59.4
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.5e-23 115.5 93 61.3
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 5.9e-20 103.6 88 63.6
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 3.6e-17 94.4 91 53.8
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 3.4e-15 87.8 511 22.7
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 9.8e-15 86.3 204 29.9
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 1.3e-14 85.9 54 72.2
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 1.3e-14 85.9 101 45.5
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 4.1e-13 80.9 48 79.2
SMO117G0241 Selaginella moellendorffii HOM05D067901 ORTHO05D006758 6.4e-06 57.0 151 29.1


User provided reference genes

Program Settings