Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g32540 Fragaria vesca HOM05D000439 ORTHO05D029471 2.5e-63 245.4 132 100.0
FvH4_4g09570 Fragaria vesca HOM05D000439 ORTHO05D029471 2.6e-36 155.6 140 65.0
FAN14G4123 Fragaria x ananassa HOM05D000439 ORTHO05D029471 8.5e-35 150.6 80 92.5
FAN27G0407 Fragaria x ananassa HOM05D000439 ORTHO05D029471 2.8e-22 109.0 76 76.3
FAN12G2572 Fragaria x ananassa HOM05D000439 ORTHO05D006172 1.8e-16 89.7 62 72.6
FAN07G0650 Fragaria x ananassa HOM05D000439 ORTHO05D006172 2.3e-16 89.4 62 72.6
FAN17G2341 Fragaria x ananassa HOM05D000439 ORTHO05D006172 2.3e-16 89.4 62 72.6
FAN22G2148 Fragaria x ananassa HOM05D000439 ORTHO05D006172 2.3e-16 89.4 62 72.6
FvH4_4g15550 Fragaria vesca HOM05D000439 ORTHO05D006172 6.7e-16 87.8 62 71.0
RcHm_v2.0_Chr4g0416211 Rosa chinensis HOM05D000439 ORTHO05D006172 2.0e-15 86.3 58 72.4
Manes.15G029200 Manihot esculenta HOM05D000439 ORTHO05D006172 1.7e-14 83.2 62 66.1
Prupe.1G013700 Prunus persica HOM05D000439 ORTHO05D006172 1.7e-14 83.2 62 66.1
MELO3C012651.2 Cucumis melo HOM05D000439 ORTHO05D006172 2.2e-14 82.8 62 67.7
Haze_00899 Corylus avellana HOM05D000439 ORTHO05D006172 2.8e-14 82.4 62 66.1
ClCG06G006240 Citrullus lanatus HOM05D000439 ORTHO05D006172 3.7e-14 82.0 62 67.7
CsaV3_7G022490 Cucumis sativus L. HOM05D000439 ORTHO05D006172 3.7e-14 82.0 62 67.7
Cfa015646 Carpinus fangiana HOM05D000439 ORTHO05D006172 4.8e-14 81.6 62 66.1
QL06p002460 Quercus lobata HOM05D000439 ORTHO05D006172 4.8e-14 81.6 62 66.1
Manes.03G178500 Manihot esculenta HOM05D000439 ORTHO05D006172 1.1e-13 80.5 62 62.9
MD16G1194000 Malus domestica HOM05D000439 ORTHO05D006172 1.4e-13 80.1 69 58.0
Sed0018003 Sechium edule HOM05D000439 ORTHO05D006172 1.8e-13 79.7 62 66.1
CANSAT78G0526 Cannabis sativa HOM05D000439 ORTHO05D006172 2.4e-13 79.3 62 62.9
Potri.008G153000 Populus trichocarpa HOM05D000439 ORTHO05D006172 3.1e-13 79.0 63 65.1
CiPaw.01G166100 Carya illinoinensis HOM05D000439 ORTHO05D006172 4.1e-13 78.6 62 64.5
Sabra08G0116600 Salix brachista HOM05D000439 ORTHO05D006172 4.1e-13 78.6 63 65.1
MD13G1193100 Malus domestica HOM05D000439 ORTHO05D006172 5.3e-13 78.2 62 59.7
TAR365G0584 Trochodendron aralioides HOM05D000439 ORTHO05D006172 7.0e-13 77.8 62 61.3
Cpa.g.sc58.106 Carica papaya HOM05D000439 ORTHO05D006172 9.1e-13 77.4 58 65.5
Dinv13996 Davidia involucrata HOM05D000439 ORTHO05D006172 9.1e-13 77.4 58 67.2
CSS0007127 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D006172 1.6e-12 76.6 56 64.3
Rhsim02G0025300 Rhododendron simsii HOM05D000439 ORTHO05D006172 2.0e-12 76.3 96 42.7
Duzib052G0960 Durio zibethinus HOM05D000439 ORTHO05D006172 2.6e-12 75.9 62 61.3
PGR004G1056 Punica granatum HOM05D000439 ORTHO05D006172 2.6e-12 75.9 60 63.3
Atru.chr4.2461 Acer truncatum HOM05D000439 ORTHO05D006172 3.5e-12 75.5 58 69.0
Actinidia23511 Actinidia chinensis HOM05D000439 ORTHO05D006172 3.5e-12 75.5 58 63.8
Thecc.04G232100 Theobroma cacao HOM05D000439 ORTHO05D006172 3.5e-12 75.5 58 65.5
TWI09G0034 Tripterygium wilfordii HOM05D000439 ORTHO05D006172 3.5e-12 75.5 59 66.1
TWI53G0069 Tripterygium wilfordii HOM05D000439 ORTHO05D006172 3.5e-12 75.5 59 66.1
TWI73G0578 Tripterygium wilfordii HOM05D000439 ORTHO05D006172 3.5e-12 75.5 59 66.1
TAR636G3313 Trochodendron aralioides HOM05D000439 ORTHO05D006172 3.5e-12 75.5 62 58.1
Aqoxy5G00467 Aquilegia oxysepala HOM05D000439 ORTHO05D006172 4.5e-12 75.1 68 54.4
Lj5g0001183 Lotus japonicus HOM05D000439 ORTHO05D006172 5.9e-12 74.7 58 67.2
COL.COLO4_21479 Corchorus olitorius HOM05D000439 ORTHO05D006172 7.7e-12 74.3 58 63.8
Glyma.20G146100 Glycine max HOM05D000439 ORTHO05D006172 7.7e-12 74.3 69 59.4
Ciclev10004753m.g Citrus clementina HOM05D000439 ORTHO05D006172 1.0e-11 73.9 58 65.5
Phvul.007G057500 Phaseolus vulgaris HOM05D000439 ORTHO05D006172 1.0e-11 73.9 69 59.4
Sc25g0004360 Simmondsia chinensis HOM05D000439 ORTHO05D006172 1.0e-11 73.9 58 62.1
VMungo0720G0964 Vigna mungo HOM05D000439 ORTHO05D006172 1.0e-11 73.9 69 59.4
Eucgr.H03480 Eucalyptus grandis HOM05D000439 ORTHO05D006172 1.3e-11 73.6 62 61.3
Ah.04g154630 Amaranthus hybridus HOM05D000439 ORTHO05D006172 1.7e-11 73.2 62 59.7
Glyma.10G248000 Glycine max HOM05D000439 ORTHO05D006172 1.7e-11 73.2 69 58.0
AUR62033634 Chenopodium quinoa HOM05D000439 ORTHO05D006172 2.2e-11 72.8 60 58.3
Gohir.D02G038900 Gossypium hirsutum HOM05D000439 ORTHO05D006172 2.2e-11 72.8 58 62.1
Gorai.005G042900 Gossypium raimondii HOM05D000439 ORTHO05D006172 2.2e-11 72.8 58 62.1
Solyc09g076050.4 Solanum lycopersicum HOM05D000439 ORTHO05D006172 2.9e-11 72.4 59 55.9
Lj3C734T11 Lonicera japonica HOM05D000439 ORTHO05D006172 3.8e-11 72.0 58 62.1
Nn1g02321 Nelumbo nucifera HOM05D000439 ORTHO05D006172 3.8e-11 72.0 66 50.0
Nn4g26325 Nelumbo nucifera HOM05D000439 ORTHO05D006172 3.8e-11 72.0 68 51.5
AUR62034747 Chenopodium quinoa HOM05D000439 ORTHO05D006172 5.0e-11 71.6 60 56.7
Hund12129 Selenicereus undatus HOM05D000439 ORTHO05D006172 5.0e-11 71.6 58 56.9
Sc19g0004140 Simmondsia chinensis HOM05D000439 ORTHO05D006172 5.0e-11 71.6 58 63.8
Sopen09g030890 Solanum pennellii HOM05D000439 ORTHO05D006172 5.0e-11 71.6 58 56.9
PGSC0003DMG400030083 Solanum tuberosum HOM05D000439 ORTHO05D006172 5.0e-11 71.6 58 56.9
Gohir.A02G032200 Gossypium hirsutum HOM05D000439 ORTHO05D006172 6.5e-11 71.2 58 60.3
EL10As3g23288 Beta vulgaris HOM05D000439 ORTHO05D006172 8.5e-11 70.9 56 58.9
CSS0012474 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D006172 8.5e-11 70.9 62 54.8
Peaxi162Scf00092g01013 Petunia axillaris HOM05D000439 ORTHO05D006172 8.5e-11 70.9 58 60.3
arahy.Tifrunner.gnm1.ann1.JR532J Arachis hypogaea HOM05D000439 ORTHO05D006172 1.1e-10 70.5 56 64.3
arahy.Tifrunner.gnm1.ann1.Y59G7X Arachis hypogaea HOM05D000439 ORTHO05D006172 1.1e-10 70.5 56 64.3
Duzib212G0312 Durio zibethinus HOM05D000439 ORTHO05D006172 1.1e-10 70.5 58 60.3
THA.LOC104803025 Tarenaya hassleriana HOM05D000439 ORTHO05D006172 1.5e-10 70.1 65 60.0
Medtr1g103710 Medicago truncatula HOM05D000439 ORTHO05D006172 1.9e-10 69.7 58 62.1
Lalb_Chr21g0304711 Lupinus albus HOM05D000439 ORTHO05D006172 3.2e-10 68.9 58 60.3
DCAR_027218 Daucus carota HOM05D000439 ORTHO05D006172 4.2e-10 68.6 58 58.6
Gohir.A09G215900 Gossypium hirsutum HOM05D000439 ORTHO05D006172 4.2e-10 68.6 58 60.3
Gohir.D09G218300 Gossypium hirsutum HOM05D000439 ORTHO05D006172 4.2e-10 68.6 58 60.3
Gorai.006G239300 Gossypium raimondii HOM05D000439 ORTHO05D006172 4.2e-10 68.6 58 60.3
Hma1.2p1_0602F.1_g187340 Hydrangea macrophylla HOM05D000439 ORTHO05D006172 4.2e-10 68.6 56 60.7
Psat6g207360 Pisum sativum HOM05D000439 ORTHO05D006172 4.2e-10 68.6 59 59.3
Rhsim04G0202100 Rhododendron simsii HOM05D000439 ORTHO05D006172 4.2e-10 68.6 58 60.3
TPR.G5544 Trifolium pratense HOM05D000439 ORTHO05D006172 5.5e-10 68.2 58 60.3
MBI11_g31279_MAGBIO Magnolia biondii HOM05D000439 ORTHO05D006172 7.2e-10 67.8 78 42.3
CAN.G490.11 Capsicum annuum HOM05D000439 ORTHO05D006172 9.4e-10 67.4 58 55.2
Ca_10896_v3 Cicer arietinum L. HOM05D000439 ORTHO05D006172 9.4e-10 67.4 58 62.1
THA.LOC104809078 Tarenaya hassleriana HOM05D000439 ORTHO05D006172 1.2e-09 67.0 67 53.7
THA.LOC104822271 Tarenaya hassleriana HOM05D000439 ORTHO05D006172 1.2e-09 67.0 65 55.4
AT4G14900 Arabidopsis thaliana HOM05D000439 ORTHO05D006172 1.6e-09 66.6 58 55.2
CARHR221480 Cardamine hirsuta HOM05D000439 ORTHO05D006172 2.1e-09 66.2 58 55.2
Carub.0007s2721 Capsella rubella HOM05D000439 ORTHO05D006172 3.6e-09 65.5 58 53.4
Sp3g20210 Schrenkiella parvula HOM05D000439 ORTHO05D006172 3.6e-09 65.5 58 55.2
Thhalv10020440m.g Eutrema salsugineum HOM05D000439 ORTHO05D006172 4.7e-09 65.1 58 55.2
AL7G40950 Arabidopsis lyrata HOM05D000439 ORTHO05D006172 6.1e-09 64.7 58 53.4
CARHR098350 Cardamine hirsuta HOM05D000439 ORTHO05D006172 6.1e-09 64.7 59 55.9
ECA240G1500 Erigeron canadensis HOM05D000439 ORTHO05D006172 6.1e-09 64.7 56 58.9
ECA240G1807 Erigeron canadensis HOM05D000439 ORTHO05D006172 6.1e-09 64.7 56 58.9
Lsat_1_v5_gn_7_67240 Lactuca sativa HOM05D000439 ORTHO05D006172 6.1e-09 64.7 56 58.9
BcaB04g20517 Brassica carinata HOM05D000439 ORTHO05D006172 1.0e-08 63.9 58 53.4
BcaC09g49175 Brassica carinata HOM05D000439 ORTHO05D006172 1.0e-08 63.9 58 53.4
A01p32650 Brassica napus HOM05D000439 ORTHO05D006172 1.0e-08 63.9 58 53.4
C01p41830 Brassica napus HOM05D000439 ORTHO05D006172 1.0e-08 63.9 58 53.4
BolC1t04137H Brassica oleracea HOM05D000439 ORTHO05D006172 1.0e-08 63.9 58 53.4
BraA01t03393Z Brassica rapa HOM05D000439 ORTHO05D006172 1.0e-08 63.9 58 53.4
Carub.0003s2262 Capsella rubella HOM05D000439 ORTHO05D006172 1.0e-08 63.9 58 56.9
Lsat_1_v5_gn_9_80141 Lactuca sativa HOM05D000439 ORTHO05D006172 1.4e-08 63.5 58 58.6
Oeu050279.2 Olea europaea HOM05D000439 ORTHO05D006172 1.8e-08 63.2 66 50.0
Oeu031230.1 Olea europaea HOM05D000439 ORTHO05D006172 2.3e-08 62.8 66 48.5
Sp7g13040 Schrenkiella parvula HOM05D000439 ORTHO05D006172 2.3e-08 62.8 61 52.5
SHI00449 Sapria himalayana HOM05D000439 ORTHO05D006172 3.0e-08 62.4 58 56.9
SGA_v2.0_scaffold550G52866 Striga asiatica HOM05D000439 ORTHO05D006172 3.0e-08 62.4 58 56.9
AL3G36750 Arabidopsis lyrata HOM05D000439 ORTHO05D006172 4.0e-08 62.0 58 55.2
MSTRG.24741 Avicennia marina HOM05D000439 ORTHO05D006172 4.0e-08 62.0 57 57.9
PSO210G3898 Papaver somniferum HOM05D000439 ORTHO05D006172 4.0e-08 62.0 67 49.3
PSO832G2628 Papaver somniferum HOM05D000439 ORTHO05D006172 4.0e-08 62.0 67 49.3
Migut.N00184 Erythranthe guttata HOM05D000439 ORTHO05D006172 5.2e-08 61.6 60 55.0
Aa31LG8G9010 Aethionema arabicum HOM05D000439 ORTHO05D006172 6.7e-08 61.2 65 50.8
Thhalv10024868m.g Eutrema salsugineum HOM05D000439 ORTHO05D006172 8.8e-08 60.8 62 51.6
AT3G22440 Arabidopsis thaliana HOM05D000439 ORTHO05D006172 1.2e-07 60.5 58 53.4
HanXRQChr06g0181431 Helianthus annuus HOM05D000439 ORTHO05D006172 1.2e-07 60.5 58 56.9
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.0e-07 59.7 50 62.0
Nitab4.5_0000043g0100 Nicotiana tabacum HOM05D000439 ORTHO05D006172 2.0e-07 59.7 58 53.4
Nitab4.5_0004258g0030 Nicotiana tabacum HOM05D000439 ORTHO05D006172 2.0e-07 59.7 58 53.4
BcaC05g28068 Brassica carinata HOM05D000439 ORTHO05D006172 2.6e-07 59.3 56 51.8
C05p40900 Brassica napus HOM05D000439 ORTHO05D006172 2.6e-07 59.3 56 51.8
BolC5t32832H Brassica oleracea HOM05D000439 ORTHO05D006172 2.6e-07 59.3 56 51.8
unitig_26.g10518 Utricularia gibba HOM05D000439 ORTHO05D006172 1.3e-06 57.0 58 51.7
SGA_v2.0_scaffold166G38355 Striga asiatica HOM05D000439 ORTHO05D006172 3.7e-06 55.5 57 56.1


User provided reference genes

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