Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g25230 Fragaria vesca HOM05D003174 ORTHO05D003439 0.0e+00 1251.1 771 100.0
FAN05G5174 Fragaria x ananassa HOM05D003174 ORTHO05D003439 0.0e+00 1121.7 739 95.8
FAN09G4813 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.2e-258 896.7 739 76.7
FAN02G1934 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.4e-238 829.3 604 75.2
RcHm_v2.0_Chr3g0467041 Rosa chinensis HOM05D003174 ORTHO05D003439 1.7e-228 796.6 575 73.9
FAN09G4560 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.3e-225 786.2 638 69.4
FAN05G2164 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.9e-212 742.7 597 68.8
FvH4_6g14130 Fragaria vesca HOM05D003174 ORTHO05D003439 2.3e-140 503.8 449 65.0
FAN14G5980 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.1e-93 347.8 334 60.5
Prupe.6G252000 Prunus persica HOM05D003174 ORTHO05D003439 6.0e-48 196.8 338 39.6
MD04G1124900 Malus domestica HOM05D003174 ORTHO05D003439 5.3e-36 157.1 334 34.7
Cfa017411 Carpinus fangiana HOM05D003174 ORTHO05D003439 4.6e-32 144.1 336 33.6
QL07p031124 Quercus lobata HOM05D003174 ORTHO05D003439 4.0e-28 131.0 294 33.3
QL07p047847 Quercus lobata HOM05D003174 ORTHO05D003439 4.0e-28 131.0 294 33.3
Haze_20757 Corylus avellana HOM05D003174 ORTHO05D003439 1.7e-26 125.6 360 31.1
arahy.Tifrunner.gnm1.ann1.IJS1VI Arachis hypogaea HOM05D003174 ORTHO05D003439 1.8e-23 115.5 139 43.9
GSVIVG01034205001 Vitis vinifera HOM05D003174 ORTHO05D003439 1.8e-23 115.5 351 30.8
arahy.Tifrunner.gnm1.ann1.Y7W1NJ Arachis hypogaea HOM05D003174 ORTHO05D003439 2.3e-23 115.2 139 43.9
arahy.Tifrunner.gnm1.ann1.6UZP51 Arachis hypogaea HOM05D003174 ORTHO05D003439 1.1e-22 112.8 125 44.8
arahy.Tifrunner.gnm1.ann1.FD13B1 Arachis hypogaea HOM05D003174 ORTHO05D003439 3.3e-22 111.3 139 42.4
MELO3C003115.2 Cucumis melo HOM05D003174 ORTHO05D003439 1.6e-21 109.0 127 44.1
CANSAT21G1894 Cannabis sativa HOM05D003174 ORTHO05D003439 2.2e-21 108.6 120 46.7
Dinv35623 Davidia involucrata HOM05D003174 ORTHO05D003439 2.8e-21 108.2 153 39.9
Manes.08G078100 Manihot esculenta HOM05D003174 ORTHO05D003439 4.8e-21 107.5 386 26.2
Sed0000072 Sechium edule HOM05D003174 ORTHO05D003439 4.8e-21 107.5 154 39.0
Lalb_Chr06g0170971 Lupinus albus HOM05D003174 ORTHO05D003439 1.1e-20 106.3 188 37.2
CSS0007124 Camellia sinensis var. sinensis HOM05D003174 ORTHO05D003439 2.4e-20 105.1 486 26.3
CsaV3_4G024810 Cucumis sativus L. HOM05D003174 ORTHO05D003439 2.4e-20 105.1 129 42.6
Lj1g0011268 Lotus japonicus HOM05D003174 ORTHO05D003439 4.1e-20 104.4 142 40.8
SGA_v2.0_scaffold6G03139 Striga asiatica HOM05D003174 ORTHO05D003439 6.9e-20 103.6 161 38.5
Ciclev10011079m.g Citrus clementina HOM05D003174 ORTHO05D003439 1.5e-19 102.4 120 41.7
Phvul.007G157300 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 1.5e-19 102.4 123 44.7
Thecc.05G042400 Theobroma cacao HOM05D003174 ORTHO05D003439 1.5e-19 102.4 311 28.3
Glyma.13G131100 Glycine max HOM05D003174 ORTHO05D003439 2.0e-19 102.1 130 40.0
Gohir.A09G157600 Gossypium hirsutum HOM05D003174 ORTHO05D003439 2.6e-19 101.7 115 41.7
Gorai.006G174400 Gossypium raimondii HOM05D003174 ORTHO05D003439 3.4e-19 101.3 110 43.6
CAN.G97.37 Capsicum annuum HOM05D003174 ORTHO05D003439 5.9e-19 100.5 115 47.0
TAR623G0639 Trochodendron aralioides HOM05D003174 ORTHO05D003439 5.9e-19 100.5 116 41.4
Medtr1g069015 Medicago truncatula HOM05D003174 ORTHO05D003439 7.7e-19 100.1 130 40.8
Nn2g10415 Nelumbo nucifera HOM05D003174 ORTHO05D003439 1.0e-18 99.8 188 34.6
VMungo1127G0815 Vigna mungo HOM05D003174 ORTHO05D003439 1.0e-18 99.8 108 42.6
MSTRG.924 Avicennia marina HOM05D003174 ORTHO05D003439 3.8e-18 97.8 109 42.2
MBI17_g16533_MAGBIO Magnolia biondii HOM05D003174 ORTHO05D003439 3.8e-18 97.8 140 36.4
PGR004G2807 Punica granatum HOM05D003174 ORTHO05D003439 3.8e-18 97.8 144 39.6
Rhsim05G0189700 Rhododendron simsii HOM05D003174 ORTHO05D003439 3.8e-18 97.8 166 35.5
Actinidia11253 Actinidia chinensis HOM05D003174 ORTHO05D003439 5.0e-18 97.4 112 44.6
Lj3A970G57 Lonicera japonica HOM05D003174 ORTHO05D003439 5.0e-18 97.4 168 33.9
Medtr1g069020 Medicago truncatula HOM05D003174 ORTHO05D003439 5.0e-18 97.4 113 41.6
TWI53G0288 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 6.5e-18 97.1 157 37.6
Cpa.g.sc260.5 Carica papaya HOM05D003174 ORTHO05D003439 1.1e-17 96.3 110 43.6
Ca_27793_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 1.1e-17 96.3 94 51.1
TAR629G3457 Trochodendron aralioides HOM05D003174 ORTHO05D003439 1.4e-17 95.9 116 39.7
Migut.C00381 Erythranthe guttata HOM05D003174 ORTHO05D003439 1.9e-17 95.5 226 31.0
Nitab4.5_0004701g0030 Nicotiana tabacum HOM05D003174 ORTHO05D003439 1.9e-17 95.5 173 35.8
Cfa015779 Carpinus fangiana HOM05D003174 ORTHO05D003439 2.5e-17 95.1 137 40.9
Eucgr.A00550 Eucalyptus grandis HOM05D003174 ORTHO05D003439 4.2e-17 94.4 139 38.1
Psat0s2930g0040 Pisum sativum HOM05D003174 ORTHO05D003439 4.2e-17 94.4 106 41.5
Potri.004G077400 Populus trichocarpa HOM05D003174 ORTHO05D003439 4.2e-17 94.4 362 26.8
Sabra04G0051000 Salix brachista HOM05D003174 ORTHO05D003439 4.2e-17 94.4 171 32.7
PGSC0003DMG400008848 Solanum tuberosum HOM05D003174 ORTHO05D003439 5.5e-17 94.0 105 43.8
Cc06_g02840 Coffea canephora HOM05D003174 ORTHO05D003439 7.2e-17 93.6 94 46.8
Nitab4.5_0000761g0050 Nicotiana tabacum HOM05D003174 ORTHO05D003439 7.2e-17 93.6 134 41.0
Nitab4.5_0004091g0070 Nicotiana tabacum HOM05D003174 ORTHO05D003439 7.2e-17 93.6 104 47.1
Solyc09g010550.4 Solanum lycopersicum HOM05D003174 ORTHO05D003439 7.2e-17 93.6 115 41.7
Aqoxy2G01410 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 9.4e-17 93.2 131 37.4
Aqoxy4G02974 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 9.4e-17 93.2 131 37.4
Sopen09g005270 Solanum pennellii HOM05D003174 ORTHO05D003439 1.2e-16 92.8 115 41.7
Lj3g0014619 Lotus japonicus HOM05D003174 ORTHO05D003439 2.1e-16 92.0 154 39.0
Solyc04g015710.3 Solanum lycopersicum HOM05D003174 ORTHO05D003439 2.1e-16 92.0 140 35.7
CiPaw.02G056500 Carya illinoinensis HOM05D003174 ORTHO05D003439 2.7e-16 91.7 141 39.0
Aa31LG1G22280 Aethionema arabicum HOM05D003174 ORTHO05D003439 3.6e-16 91.3 99 47.5
Nn1g09826 Nelumbo nucifera HOM05D003174 ORTHO05D003439 3.6e-16 91.3 91 46.2
Sopen04g007790 Solanum pennellii HOM05D003174 ORTHO05D003439 3.6e-16 91.3 140 35.7
BcaC03g13058 Brassica carinata HOM05D003174 ORTHO05D003439 6.1e-16 90.5 109 43.1
Nitab4.5_0000847g0080 Nicotiana tabacum HOM05D003174 ORTHO05D003439 6.1e-16 90.5 158 35.4
Migut.H00512 Erythranthe guttata HOM05D003174 ORTHO05D003439 7.9e-16 90.1 120 40.8
CDE07G1712 Ceratophyllum demersum HOM05D003174 ORTHO05D003439 1.0e-15 89.7 94 42.6
GSVIVG01013578001 Vitis vinifera HOM05D003174 ORTHO05D003439 1.0e-15 89.7 129 38.0
Actinidia35877 Actinidia chinensis HOM05D003174 ORTHO05D003439 1.8e-15 89.0 125 36.0
CsaV3_4G003560 Cucumis sativus L. HOM05D003174 ORTHO05D003439 2.3e-15 88.6 107 41.1
TPR.G29857 Trifolium pratense HOM05D003174 ORTHO05D003439 3.9e-15 87.8 90 45.6
unitig_736.g22251 Utricularia gibba HOM05D003174 ORTHO05D003439 3.9e-15 87.8 92 44.6
FvH4_4g11320 Fragaria vesca HOM05D003174 ORTHO05D003439 5.1e-15 87.4 127 42.5
PSO532G0060 Papaver somniferum HOM05D003174 ORTHO05D003439 5.1e-15 87.4 119 41.2
Sed0019898 Sechium edule HOM05D003174 ORTHO05D003439 5.1e-15 87.4 107 43.9
THA.LOC104816287 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 5.1e-15 87.4 121 41.3
TWI15G0304 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 5.1e-15 87.4 93 45.2
TWI15G0472 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 5.1e-15 87.4 93 45.2
AL6G11780 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 6.7e-15 87.0 111 38.7
BcaB05g21888 Brassica carinata HOM05D003174 ORTHO05D003439 6.7e-15 87.0 101 43.6
BraA02t04720Z Brassica rapa HOM05D003174 ORTHO05D003439 6.7e-15 87.0 105 42.9
MELO3C017697.2 Cucumis melo HOM05D003174 ORTHO05D003439 6.7e-15 87.0 107 40.2
CAN.G74.6 Capsicum annuum HOM05D003174 ORTHO05D003439 8.8e-15 86.7 140 33.6
BolC2t06049H Brassica oleracea HOM05D003174 ORTHO05D003439 1.1e-14 86.3 373 23.1
FAN07G2661 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.1e-14 86.3 131 42.7
FAN17G0897 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.1e-14 86.3 154 38.3
Peaxi162Scf00165g01840 Petunia axillaris HOM05D003174 ORTHO05D003439 1.1e-14 86.3 332 26.8
Dinv22692 Davidia involucrata HOM05D003174 ORTHO05D003439 1.5e-14 85.9 113 38.1
PSO675G7155 Papaver somniferum HOM05D003174 ORTHO05D003439 1.5e-14 85.9 148 32.4
Carub.0006s0132 Capsella rubella HOM05D003174 ORTHO05D003439 2.0e-14 85.5 108 38.9
Duzib106G0893 Durio zibethinus HOM05D003174 ORTHO05D003439 2.5e-14 85.1 300 26.3
CARHR210840 Cardamine hirsuta HOM05D003174 ORTHO05D003439 3.3e-14 84.7 166 31.3
TAR362G1036 Trochodendron aralioides HOM05D003174 ORTHO05D003439 3.3e-14 84.7 148 37.2
Thhalv10015290m.g Eutrema salsugineum HOM05D003174 ORTHO05D003439 4.3e-14 84.3 107 40.2
AT5G02520 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 5.7e-14 84.0 127 35.4
Haze_00715 Corylus avellana HOM05D003174 ORTHO05D003439 5.7e-14 84.0 131 39.7
Rhsim02G0075700 Rhododendron simsii HOM05D003174 ORTHO05D003439 5.7e-14 84.0 116 38.8
Duzib093G0200 Durio zibethinus HOM05D003174 ORTHO05D003439 7.4e-14 83.6 102 41.2
HanXRQChr08g0226171 Helianthus annuus HOM05D003174 ORTHO05D003439 7.4e-14 83.6 126 38.9
PSO541G3184 Papaver somniferum HOM05D003174 ORTHO05D003439 7.4e-14 83.6 107 38.3
Sp6g39990 Schrenkiella parvula HOM05D003174 ORTHO05D003439 7.4e-14 83.6 103 40.8
Aqoxy4G02973 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 1.3e-13 82.8 110 39.1
ClCG07G015840 Citrullus lanatus HOM05D003174 ORTHO05D003439 1.3e-13 82.8 119 38.7
Atru.chr3.1551 Acer truncatum HOM05D003174 ORTHO05D003439 2.8e-13 81.6 136 39.0
TPR.G23103 Trifolium pratense HOM05D003174 ORTHO05D003439 2.8e-13 81.6 77 46.8
C02p00500 Brassica napus HOM05D003174 ORTHO05D003439 3.7e-13 81.3 364 23.9
RcHm_v2.0_Chr4g0407561 Rosa chinensis HOM05D003174 ORTHO05D003439 4.8e-13 80.9 132 40.2
ECA233G2094 Erigeron canadensis HOM05D003174 ORTHO05D003439 6.3e-13 80.5 107 39.3
PSO384G3329 Papaver somniferum HOM05D035235 ORTHO05D003439 6.3e-13 80.5 126 34.9
PSO339G3795 Papaver somniferum HOM05D003174 ORTHO05D003439 1.8e-12 79.0 126 34.1
BcaC09g49501 Brassica carinata HOM05D003174 ORTHO05D003439 2.4e-12 78.6 111 40.5
Ciclev10021601m.g Citrus clementina HOM05D003174 ORTHO05D003439 2.4e-12 78.6 120 35.0
Manes.04G049000 Manihot esculenta HOM05D003174 ORTHO05D003439 2.4e-12 78.6 97 45.4
Cc06_g06750 Coffea canephora HOM05D003174 ORTHO05D003439 3.1e-12 78.2 120 30.0
Haze_00723 Corylus avellana HOM05D000268 ORTHO05D000261 3.1e-12 78.2 134 38.1
MD04G1038200 Malus domestica HOM05D003174 ORTHO05D003439 4.1e-12 77.8 109 39.4
BolC1t03544H Brassica oleracea HOM05D003174 ORTHO05D003439 6.9e-12 77.0 111 39.6
COL.COLO4_20117 Corchorus olitorius HOM05D003174 ORTHO05D003439 9.1e-12 76.6 141 30.5
HPP92_001613 Vanilla planifolia HOM05D003174 ORTHO05D003439 9.1e-12 76.6 113 36.3
COL.COLO4_14835 Corchorus olitorius HOM05D003174 ORTHO05D003439 1.2e-11 76.3 247 27.9
PGR083G2046 Punica granatum HOM05D003174 ORTHO05D003439 1.5e-11 75.9 105 41.0
BraA01t02958Z Brassica rapa HOM05D001877 ORTHO05D001886 2.0e-11 75.5 105 39.0
Gohir.A08G074200 Gossypium hirsutum HOM05D003174 ORTHO05D003439 2.0e-11 75.5 103 37.9
Gohir.D08G083400 Gossypium hirsutum HOM05D003174 ORTHO05D003439 2.0e-11 75.5 103 37.9
Gorai.004G087600 Gossypium raimondii HOM05D003174 ORTHO05D003439 2.0e-11 75.5 103 37.9
TPR.G37089 Trifolium pratense HOM05D003174 ORTHO05D003439 2.0e-11 75.5 103 35.9
BcaB04g20191 Brassica carinata HOM05D003174 ORTHO05D003439 2.6e-11 75.1 112 42.0
Thecc.05G002600 Theobroma cacao HOM05D003174 ORTHO05D003439 3.4e-11 74.7 101 36.6
Medtr5g040080 Medicago truncatula HOM05D003174 ORTHO05D003439 4.5e-11 74.3 148 30.4
Eucgr.I00627 Eucalyptus grandis HOM05D003174 ORTHO05D003439 5.9e-11 73.9 110 40.0
PGSC0003DMG400027275 Solanum tuberosum HOM05D007490 ORTHO05D008750 5.9e-11 73.9 80 42.5
arahy.Tifrunner.gnm1.ann1.D9JBU2 Arachis hypogaea HOM05D003174 ORTHO05D003439 7.7e-11 73.6 95 41.1
Thhalv10023956m.g Eutrema salsugineum HOM05D001877 ORTHO05D001886 7.7e-11 73.6 92 39.1
Medtr7g039520 Medicago truncatula HOM05D003174 ORTHO05D003439 7.7e-11 73.6 148 30.4
Psat2g183360 Pisum sativum HOM05D003174 ORTHO05D003439 7.7e-11 73.6 151 31.8
QL10p045460 Quercus lobata HOM05D003174 ORTHO05D003439 7.7e-11 73.6 129 35.7
Hma1.2p1_0324F.1_g125650 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 1.3e-10 72.8 325 25.2
Hma1.2p1_3259F.1_g334646 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 1.3e-10 72.8 325 25.2
arahy.Tifrunner.gnm1.ann1.T81LQ1 Arachis hypogaea HOM05D003174 ORTHO05D003439 1.7e-10 72.4 109 38.5
Atru.chr3.120 Acer truncatum HOM05D003174 ORTHO05D003439 2.2e-10 72.0 95 42.1
Sp2g05410 Schrenkiella parvula HOM05D001877 ORTHO05D001886 2.2e-10 72.0 107 37.4
Gohir.D09G152900 Gossypium hirsutum HOM05D003174 ORTHO05D003439 2.9e-10 71.6 65 49.2
Aa31LG2G10940 Aethionema arabicum HOM05D003174 ORTHO05D003439 6.5e-10 70.5 92 41.3
Ca_04778_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 6.5e-10 70.5 90 37.8
arahy.Tifrunner.gnm1.ann1.7EM6TL Arachis hypogaea HOM05D003174 ORTHO05D003439 8.5e-10 70.1 111 36.0
AL2G18170 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 1.1e-09 69.7 109 33.9
CANSAT01G0457 Cannabis sativa HOM05D003174 ORTHO05D003439 1.1e-09 69.7 111 37.8
THA.LOC104802302 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 1.4e-09 69.3 92 39.1
ATR0019G037 Amborella trichopoda HOM05D003174 ORTHO05D003439 1.9e-09 68.9 127 32.3
EL10Ac4g08337 Beta vulgaris HOM05D003174 ORTHO05D003439 1.9e-09 68.9 125 36.0
TPR.G21831 Trifolium pratense HOM05D000319 ORTHO05D003439 1.9e-09 68.9 96 36.5
AT1G58210 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 2.5e-09 68.6 92 39.1
Potri.007G124300 Populus trichocarpa HOM05D003174 ORTHO05D003439 3.2e-09 68.2 91 36.3
SGA_v2.0_scaffold204G41637 Striga asiatica HOM05D003174 ORTHO05D003439 4.2e-09 67.8 139 28.8
Sabra07G0100600 Salix brachista HOM05D003174 ORTHO05D003439 5.5e-09 67.4 108 33.3
vmacro08698 Vaccinium macrocarpon HOM05D003174 ORTHO05D003439 1.6e-08 65.9 89 39.3
SHI29135 Sapria himalayana HOM05D003174 ORTHO05D003439 2.1e-08 65.5 96 36.5
Glyma.10G043400 Glycine max HOM05D003174 ORTHO05D003439 2.7e-08 65.1 95 37.9
EL10Ac4g08332 Beta vulgaris HOM05D003174 ORTHO05D003439 3.6e-08 64.7 125 35.2
Sc02g0004510 Simmondsia chinensis HOM05D003174 ORTHO05D003439 3.6e-08 64.7 113 34.5
Lsat_1_v5_gn_2_36541 Lactuca sativa HOM05D003174 ORTHO05D003439 6.1e-08 63.9 131 29.0
QL09p046209 Quercus lobata HOM05D003174 ORTHO05D003439 1.0e-07 63.2 108 37.0
SHI12657 Sapria himalayana HOM05D003174 ORTHO05D003439 3.9e-07 61.2 75 41.3
VMungo1127G0302 Vigna mungo HOM05D003174 ORTHO05D003439 3.9e-07 61.2 93 37.6
Carub.0002s0640 Capsella rubella HOM05D003174 ORTHO05D003439 8.8e-07 60.1 79 34.2
Os04g0347900 Oryza sativa ssp. japonica HOM05D003174 ORTHO05D003439 1.1e-06 59.7 92 32.6
arahy.Tifrunner.gnm1.ann1.QHLS1J Arachis hypogaea HOM05D003174 ORTHO05D003439 1.5e-06 59.3 166 28.9
arahy.Tifrunner.gnm1.ann1.SHBY5H Arachis hypogaea HOM05D003174 ORTHO05D003439 1.5e-06 59.3 45 57.8
AUR62019568 Chenopodium quinoa HOM05D003174 ORTHO05D003439 3.3e-06 58.2 132 32.6
AUR62043191 Chenopodium quinoa HOM05D003174 ORTHO05D003439 4.4e-06 57.8 142 31.7
HanXRQChr13g0395041 Helianthus annuus HOM05D003174 ORTHO05D003439 9.7e-06 56.6 58 44.8
TPR.G22580 Trifolium pratense HOM05D003174 ORTHO05D003439 9.7e-06 56.6 105 28.6


User provided reference genes

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