Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g23860 Fragaria vesca HOM05D007273 ORTHO05D009230 1.3e-140 503.1 256 100.0
FAN05G2271 Fragaria x ananassa HOM05D007273 ORTHO05D009230 2.8e-135 485.3 256 96.5
RcHm_v2.0_Chr3g0482541 Rosa chinensis HOM05D007273 ORTHO05D009230 8.2e-111 404.1 261 80.8
Prupe.7G059600 Prunus persica HOM05D007273 ORTHO05D009230 6.6e-92 341.3 267 68.9
FAN09G1358 Fragaria x ananassa HOM05D007273 ORTHO05D009230 2.7e-85 319.3 256 70.3
Haze_19853 Corylus avellana HOM05D007273 ORTHO05D009230 1.0e-84 317.4 238 68.1
Cfa016813 Carpinus fangiana HOM05D007273 ORTHO05D009230 9.5e-83 310.8 239 67.8
CiPaw.09G038500 Carya illinoinensis HOM05D007273 ORTHO05D009230 1.2e-82 310.5 246 65.9
Lj1g0021019 Lotus japonicus HOM05D007273 ORTHO05D009230 1.7e-79 300.1 257 62.3
CsaV3_4G011670 Cucumis sativus L. HOM05D007273 ORTHO05D009230 6.4e-79 298.1 231 67.5
CANSAT80G0412 Cannabis sativa HOM05D007273 ORTHO05D009230 1.4e-78 297.0 227 67.8
CANSAT80G2704 Cannabis sativa HOM05D007273 ORTHO05D009230 1.4e-78 297.0 226 68.1
Psat3g072760 Pisum sativum HOM05D007273 ORTHO05D009230 1.0e-76 290.8 243 63.8
QL07p000584 Quercus lobata HOM05D007273 ORTHO05D009230 1.7e-76 290.0 252 63.9
ClCG04G000150 Citrullus lanatus HOM05D007273 ORTHO05D009230 1.5e-75 287.0 225 68.0
Ca_08456_v3 Cicer arietinum L. HOM05D007273 ORTHO05D009230 5.6e-75 285.0 241 64.3
Phvul.001G131900 Phaseolus vulgaris HOM05D007273 ORTHO05D009230 7.3e-75 284.6 245 62.9
Medtr7g091490 Medicago truncatula HOM05D007273 ORTHO05D009230 9.5e-75 284.3 229 64.6
VMungo1383G0084 Vigna mungo HOM05D007273 ORTHO05D009230 1.4e-73 280.4 240 62.5
Glyma.03G136600 Glycine max HOM05D007273 ORTHO05D009230 2.3e-73 279.6 248 60.9
arahy.Tifrunner.gnm1.ann1.J7IQUN Arachis hypogaea HOM05D007273 ORTHO05D009230 1.5e-72 276.9 254 59.4
TWI74G1215 Tripterygium wilfordii HOM05D007273 ORTHO05D009230 7.5e-72 274.6 242 59.1
Sed0019353 Sechium edule HOM05D007273 ORTHO05D009230 1.3e-71 273.9 228 64.0
Gorai.006G136300 Gossypium raimondii HOM05D007273 ORTHO05D009230 3.7e-71 272.3 237 60.8
Thecc.05G153100 Theobroma cacao HOM05D007273 ORTHO05D009230 1.4e-70 270.4 231 61.5
Eucgr.A02345 Eucalyptus grandis HOM05D007273 ORTHO05D009230 1.9e-70 270.0 257 55.6
Gohir.D09G118000 Gossypium hirsutum HOM05D007273 ORTHO05D009230 1.9e-70 270.0 237 60.3
Sabra06G0036200 Salix brachista HOM05D007273 ORTHO05D009230 3.2e-70 269.2 247 57.1
Gohir.A09G121900 Gossypium hirsutum HOM05D007273 ORTHO05D009230 2.1e-69 266.5 232 60.8
COL.COLO4_28286 Corchorus olitorius HOM05D007273 ORTHO05D009230 6.0e-69 265.0 233 60.5
FAN02G1642 Fragaria x ananassa HOM05D007273 ORTHO05D009230 1.0e-68 264.2 137 94.9
Lalb_Chr01g0017311 Lupinus albus HOM05D007273 ORTHO05D009230 6.6e-68 261.5 242 58.7
Cpa.g.sc92.54 Carica papaya HOM05D007273 ORTHO05D009230 2.5e-67 259.6 240 59.2
PGR004G1947 Punica granatum HOM05D007273 ORTHO05D009230 5.6e-67 258.5 202 67.8
Potri.006G051600 Populus trichocarpa HOM05D007273 ORTHO05D009230 1.1e-65 254.2 244 56.1
Manes.09G022200 Manihot esculenta HOM05D007273 ORTHO05D009230 2.3e-65 253.1 234 60.3
Ciclev10033324m.g Citrus clementina HOM05D007273 ORTHO05D009230 9.9e-64 247.7 240 57.1
Nn2g15217 Nelumbo nucifera HOM05D007273 ORTHO05D009230 1.4e-62 243.8 240 57.1
Dinv12487 Davidia involucrata HOM05D007273 ORTHO05D009230 5.4e-62 241.9 240 53.3
Rhsim03G0024900 Rhododendron simsii HOM05D007273 ORTHO05D009230 7.1e-62 241.5 242 54.1
Carub.0004s2403 Capsella rubella HOM05D007273 ORTHO05D009230 7.8e-61 238.0 241 54.4
CARHR136850 Cardamine hirsuta HOM05D007273 ORTHO05D009230 2.3e-60 236.5 248 53.6
Thhalv10017127m.g Eutrema salsugineum HOM05D007273 ORTHO05D009230 2.3e-60 236.5 232 56.9
TAR369G0984 Trochodendron aralioides HOM05D007273 ORTHO05D009230 2.3e-60 236.5 261 51.0
Actinidia39224 Actinidia chinensis HOM05D007273 ORTHO05D009230 1.1e-59 234.2 237 54.0
Lsat_1_v5_gn_9_29100 Lactuca sativa HOM05D007273 ORTHO05D009230 1.5e-59 233.8 249 53.0
BcaNung02834 Brassica carinata HOM05D007273 ORTHO05D009230 2.5e-59 233.0 232 54.3
A05p02510 Brassica napus HOM05D007273 ORTHO05D009230 5.6e-59 231.9 232 54.7
BraA05t19244Z Brassica rapa HOM05D007273 ORTHO05D009230 5.6e-59 231.9 232 54.7
THA.LOC104802102 Tarenaya hassleriana HOM05D007273 ORTHO05D009230 9.5e-59 231.1 246 54.1
vmacro07848 Vaccinium macrocarpon HOM05D007273 ORTHO05D009230 1.2e-58 230.7 247 52.6
BolC4t21937H Brassica oleracea HOM05D003650 ORTHO05D004213 2.1e-58 229.9 239 52.7
C04p02970 Brassica napus HOM05D007273 ORTHO05D009230 6.2e-58 228.4 239 51.9
SalBow6G5536 Salvia bowleyana HOM05D007273 ORTHO05D009230 8.1e-58 228.0 247 50.6
Aa31LG1G23760 Aethionema arabicum HOM05D007273 ORTHO05D009230 1.4e-57 227.3 241 53.9
Sopen02g032350 Solanum pennellii HOM05D007273 ORTHO05D009230 1.4e-57 227.3 241 49.8
Sp4g24020 Schrenkiella parvula HOM05D007273 ORTHO05D009230 2.4e-57 226.5 244 52.5
AL4G40060 Arabidopsis lyrata HOM05D007273 ORTHO05D009230 5.2e-57 225.3 253 52.2
CAN.G417.4 Capsicum annuum HOM05D007273 ORTHO05D009230 6.8e-57 224.9 232 53.0
ECA247G0394 Erigeron canadensis HOM05D007273 ORTHO05D009230 6.8e-57 224.9 236 51.7
AT2G41750 Arabidopsis thaliana HOM05D007273 ORTHO05D009230 8.9e-57 224.6 245 53.1
HanXRQChr05g0128781 Helianthus annuus HOM05D007273 ORTHO05D009230 4.4e-56 222.2 233 51.5
Solyc02g087600.3 Solanum lycopersicum HOM05D007273 ORTHO05D009230 4.4e-56 222.2 241 49.4
Peaxi162Scf00002g02715 Petunia axillaris HOM05D007273 ORTHO05D009230 9.9e-56 221.1 247 49.4
PGSC0003DMG401001308 Solanum tuberosum HOM05D007273 ORTHO05D009230 1.3e-55 220.7 241 49.0
SGA_v2.0_scaffold69G23119 Striga asiatica HOM05D007273 ORTHO05D009230 1.3e-55 220.7 234 53.0
Nitab4.5_0000082g0140 Nicotiana tabacum HOM05D007273 ORTHO05D009230 4.9e-55 218.8 247 49.0
EL10Ac3g07092 Beta vulgaris HOM05D007273 ORTHO05D009230 1.1e-54 217.6 235 51.9
Oeu017941.1 Olea europaea HOM05D007273 ORTHO05D009230 2.4e-54 216.5 257 50.2
Migut.J01756 Erythranthe guttata HOM05D007273 ORTHO05D009230 5.4e-54 215.3 223 54.7
Rhsim03G0024700 Rhododendron simsii HOM05D007273 ORTHO05D009230 5.4e-54 215.3 286 44.1
MSTRG.6428 Avicennia marina HOM05D007273 ORTHO05D009230 7.1e-54 214.9 239 50.2
AUR62024452 Chenopodium quinoa HOM05D007273 ORTHO05D009230 2.1e-53 213.4 249 50.2
Cc06_g17580 Coffea canephora HOM05D007273 ORTHO05D009230 3.9e-52 209.1 242 49.6
PSO339G1789 Papaver somniferum HOM05D007273 ORTHO05D009230 8.7e-52 208.0 242 49.6
DCAR_003245 Daucus carota HOM05D007273 ORTHO05D009230 1.5e-51 207.2 234 49.6
Nitab4.5_0010316g0010 Nicotiana tabacum HOM05D007273 ORTHO05D009230 1.9e-51 206.8 205 53.2
AUR62026041 Chenopodium quinoa HOM05D007273 ORTHO05D009230 4.3e-51 205.7 228 51.3
Aqoxy1G00330 Aquilegia oxysepala HOM05D007273 ORTHO05D009230 5.6e-51 205.3 235 51.9
Sc25g0005300 Simmondsia chinensis HOM05D007273 ORTHO05D009230 1.6e-50 203.8 231 48.9
MBI17_g14625_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 1.1e-49 201.1 252 47.6
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 1.2e-48 197.6 245 47.3
Os12g0142600 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 7.1e-46 188.3 245 48.6
HPP92_016047 Vanilla planifolia HOM05D007273 ORTHO05D009230 2.7e-45 186.4 249 47.4
Os11g0145100 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 3.5e-45 186.0 238 49.2
SEGI_31103 Sequoiadendron giganteum HOM05D007273 ORTHO05D009230 2.2e-39 166.8 246 43.9
Zm00001eb163370 Zea mays HOM05D007273 ORTHO05D009230 3.9e-36 156.0 242 45.0
MBI17_g36895_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 1.3e-34 151.0 170 52.4
Mapoly0023s0152 Marchantia polymorpha HOM05D007273 ORTHO05D009230 4.8e-34 149.1 287 34.8
Pp3c17_17160 Physcomitrium patens HOM05D007273 ORTHO05D009230 1.3e-31 141.0 302 35.1
ATR0626G250 Amborella trichopoda HOM05D007273 ORTHO05D009230 3.8e-31 139.4 325 31.4
Rhsim03G0024400 Rhododendron simsii HOM05D007273 ORTHO05D009230 7.1e-30 135.2 138 54.3
Rhsim03G0024300 Rhododendron simsii HOM05D007273 ORTHO05D009230 3.5e-29 132.9 138 53.6
Hma1.2p1_1611F.1_g293550 Hydrangea macrophylla HOM05D007273 ORTHO05D009230 1.9e-27 127.1 147 50.3
unitig_8.g4551 Utricularia gibba HOM05D007273 ORTHO05D009230 3.7e-26 122.9 153 49.7
SMO240G0020 Selaginella moellendorffii HOM05D007273 ORTHO05D009230 6.2e-26 122.1 202 45.0
Glyma.19G139000 Glycine max HOM05D007273 ORTHO05D009230 8.2e-26 121.7 96 66.7
Ah.04g151620 Amaranthus hybridus HOM05D007273 ORTHO05D009230 5.8e-24 115.5 217 38.7
Lju124C41T6 Lonicera japonica HOM05D007273 ORTHO05D009230 7.6e-24 115.2 102 60.8
AagrBONN_evm.TU.Sc2ySwM_228.793 Anthoceros agrestis HOM05D007273 ORTHO05D009230 3.2e-22 109.8 178 40.4
CSS0001142 Camellia sinensis var. sinensis HOM05D007273 ORTHO05D009230 4.5e-16 89.4 95 48.4
Rhsim03G0023900 Rhododendron simsii HOM05D007273 ORTHO05D009230 4.2e-14 82.8 116 42.2
TPR.G3731 Trifolium pratense HOM05D007273 ORTHO05D009230 2.1e-13 80.5 73 63.0
MCO07G627 Micromonas commoda HOM05D007273 ORTHO05D009230 2.4e-09 67.0 215 29.3
Actinidia09327 Actinidia chinensis HOM05D007273 ORTHO05D009230 1.1e-06 58.2 104 35.6


User provided reference genes

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