Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 2.8e-216 755.0 379 100.0
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 1.5e-79 300.8 159 98.1
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.8e-64 249.6 134 97.8
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.4e-60 236.1 134 93.3
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.3e-59 234.6 125 98.4
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.3e-59 234.6 125 98.4
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.2e-59 233.8 134 93.3
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 1.4e-58 231.1 125 96.8
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.6e-57 227.6 134 91.8
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 4.5e-57 226.1 131 92.4
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.5e-57 226.1 131 92.4
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.9e-55 220.7 132 90.2
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 4.3e-55 219.5 127 88.2
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 7.3e-47 192.2 124 79.0
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 2.1e-46 190.7 132 72.7
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 2.3e-45 187.2 120 80.0
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 8.9e-45 185.3 130 72.3
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 2.0e-44 184.1 124 76.6
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 2.0e-44 184.1 125 74.4
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 3.4e-44 183.3 131 71.8
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 4.4e-44 183.0 131 69.5
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 4.4e-44 183.0 131 72.5
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 5.8e-44 182.6 131 71.8
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 7.5e-44 182.2 129 69.8
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 1.7e-43 181.0 144 66.0
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 2.2e-43 180.6 131 70.2
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 2.9e-43 180.3 130 69.2
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 2.9e-43 180.3 126 70.6
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 3.7e-43 179.9 133 72.2
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 3.7e-43 179.9 133 72.2
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 3.7e-43 179.9 134 71.6
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 6.4e-43 179.1 130 70.0
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 1.1e-42 178.3 130 67.7
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 1.4e-42 177.9 114 78.1
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 1.9e-42 177.6 119 74.8
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 3.2e-42 176.8 129 70.5
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 7.0e-42 175.6 120 69.2
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 7.0e-42 175.6 114 75.4
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 9.2e-42 175.3 130 66.9
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 9.2e-42 175.3 133 69.2
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 9.2e-42 175.3 126 68.3
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 1.2e-41 174.9 130 66.9
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 1.6e-41 174.5 130 66.9
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 1.6e-41 174.5 130 68.5
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 1.6e-41 174.5 130 67.7
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 2.7e-41 173.7 132 66.7
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 2.7e-41 173.7 120 72.5
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 3.5e-41 173.3 129 69.0
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 3.5e-41 173.3 98 93.9
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 3.5e-41 173.3 142 64.1
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 3.5e-41 173.3 142 64.1
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 3.5e-41 173.3 142 64.1
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 6.0e-41 172.6 130 68.5
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.0e-40 171.8 129 68.2
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 1.7e-40 171.0 130 67.7
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 1.7e-40 171.0 138 65.9
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 2.3e-40 170.6 132 66.7
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 2.3e-40 170.6 132 69.7
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 5.1e-40 169.5 130 67.7
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 6.6e-40 169.1 126 66.7
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 8.6e-40 168.7 130 67.7
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 8.6e-40 168.7 130 67.7
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 1.5e-39 167.9 130 65.4
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 1.5e-39 167.9 124 67.7
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 1.5e-39 167.9 130 63.8
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 2.5e-39 167.2 114 71.1
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 4.3e-39 166.4 130 65.4
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 9.5e-39 165.2 130 63.8
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 9.5e-39 165.2 116 69.8
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 9.5e-39 165.2 120 68.3
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 2.8e-38 163.7 130 66.2
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 6.2e-38 162.5 132 65.2
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 8.1e-38 162.2 170 54.7
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 1.1e-37 161.8 130 63.8
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 1.4e-37 161.4 155 58.1
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 1.4e-37 161.4 125 67.2
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 1.8e-37 161.0 129 64.3
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 5.2e-37 159.5 138 64.5
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 2.0e-36 157.5 132 65.2
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 2.6e-36 157.1 120 66.7
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 2.6e-36 157.1 132 66.7
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 3.4e-36 156.8 131 64.1
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 3.4e-36 156.8 114 72.8
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 3.4e-36 156.8 136 64.0
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 4.4e-36 156.4 100 74.0
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 4.4e-36 156.4 136 62.5
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 7.5e-36 155.6 137 62.0
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 7.5e-36 155.6 137 62.0
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 7.5e-36 155.6 137 62.0
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 7.5e-36 155.6 137 62.0
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 9.9e-36 155.2 138 61.6
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 9.9e-36 155.2 133 64.7
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 1.7e-35 154.5 121 65.3
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 1.7e-35 154.5 129 62.8
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 3.7e-35 153.3 170 54.1
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 6.4e-35 152.5 126 59.5
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 8.3e-35 152.1 132 62.1
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 1.1e-34 151.8 173 53.2
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 2.4e-34 150.6 131 62.6
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 1.2e-33 148.3 116 67.2
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 1.6e-33 147.9 130 60.8
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 2.7e-33 147.1 176 50.0
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 2.3e-32 144.1 132 57.6
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 5.1e-32 142.9 105 71.4
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 7.3e-31 139.0 132 54.5
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 1.2e-30 138.3 134 56.0
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 1.1e-29 135.2 126 59.5
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.8e-29 134.4 113 56.6
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 5.2e-29 132.9 128 55.5
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 6.8e-29 132.5 100 70.0
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 1.2e-28 131.7 112 58.0
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 7.6e-28 129.0 129 53.5
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 2.9e-27 127.1 113 58.4
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 2.4e-21 107.5 111 54.1
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 4.0e-21 106.7 84 65.5
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 6.9e-21 105.9 136 47.8
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 3.3e-15 87.0 113 46.0
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 5.6e-15 86.3 66 71.2
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 3.1e-13 80.5 80 51.2
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 6.9e-13 79.3 87 51.7
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 2.6e-12 77.4 111 42.3
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 1.3e-11 75.1 48 75.0
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 1.7e-11 74.7 52 71.2
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 1.7e-11 74.7 48 75.0
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 2.4e-10 70.9 43 81.4
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 3.2e-10 70.5 56 62.5
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 3.2e-10 70.5 51 60.8
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 2.1e-09 67.8 46 71.7
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 3.5e-09 67.0 117 40.2
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 1.9e-07 61.2 46 67.4
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 2.5e-07 60.8 42 73.8
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 1.3e-06 58.5 52 55.8
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 6.2e-06 56.2 88 40.9


User provided reference genes

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