Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 1.0e-194 683.3 364 100.0
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 8.8e-191 670.2 357 100.0
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 9.7e-190 666.8 357 99.4
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 3.0e-183 645.2 357 94.7
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.2e-178 629.0 344 98.3
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 3.5e-163 578.6 341 85.3
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.0e-162 577.0 389 84.1
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.3e-154 550.1 300 99.0
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 2.1e-152 542.7 339 80.5
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 6.1e-152 541.2 338 81.4
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 4.0e-151 538.5 344 79.9
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 1.2e-150 537.0 338 80.5
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 1.2e-150 537.0 339 80.8
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 2.4e-148 529.3 340 78.2
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 7.8e-147 524.2 338 77.5
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.7e-146 523.1 300 96.3
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 9.5e-145 517.3 341 76.8
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.2e-144 516.9 339 77.0
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 8.0e-144 514.2 339 77.9
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 1.0e-143 513.8 341 78.0
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 3.1e-143 512.3 338 78.7
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 2.0e-142 509.6 336 78.0
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 2.6e-142 509.2 336 76.8
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 2.2e-141 506.1 336 76.5
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 2.9e-141 505.8 340 75.6
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 4.1e-140 501.9 341 76.0
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 5.4e-140 501.5 336 75.9
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.7e-139 499.2 339 77.0
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 6.0e-139 498.0 389 67.1
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 9.5e-137 490.7 394 66.8
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 3.6e-136 488.8 339 73.5
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 4.7e-136 488.4 340 74.4
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 1.4e-135 486.9 342 71.1
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 2.3e-135 486.1 349 72.2
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 8.3e-133 477.6 338 72.2
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 1.9e-132 476.5 338 72.5
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 7.0e-132 474.6 338 71.6
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 2.7e-131 472.6 339 73.7
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 6.0e-131 471.5 338 70.7
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 7.8e-131 471.1 340 70.6
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 3.9e-130 468.8 338 72.2
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 1.1e-129 467.2 336 70.2
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 1.2e-128 463.8 339 72.6
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 1.2e-128 463.8 338 71.9
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 2.1e-128 463.0 340 70.0
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 4.7e-128 461.8 339 71.7
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 6.2e-128 461.5 338 71.0
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 1.4e-127 460.3 336 70.2
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 2.0e-126 456.4 338 70.1
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 5.8e-126 454.9 339 69.0
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 2.2e-125 453.0 335 71.9
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 2.2e-125 453.0 339 68.4
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 2.9e-125 452.6 341 70.4
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 2.9e-125 452.6 337 72.1
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 3.7e-125 452.2 339 70.8
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 3.7e-125 452.2 337 72.1
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 6.4e-125 451.4 338 69.5
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 8.3e-125 451.1 337 72.1
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 8.3e-125 451.1 383 62.4
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 1.1e-124 450.7 337 71.8
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 1.9e-124 449.9 335 67.5
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 2.4e-124 449.5 344 69.2
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 3.2e-124 449.1 337 69.1
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 5.4e-124 448.4 336 71.4
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 7.1e-124 448.0 338 68.9
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 1.2e-123 447.2 338 71.3
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 2.1e-123 446.4 346 68.2
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 3.5e-123 445.7 338 70.7
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 4.3e-121 438.7 340 69.7
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 5.6e-121 438.3 344 67.7
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 9.5e-121 437.6 333 69.4
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 2.1e-120 436.4 340 68.5
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 2.8e-120 436.0 338 69.5
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 3.6e-120 435.6 334 67.1
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 1.8e-119 433.3 339 69.3
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 1.8e-119 433.3 339 69.3
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 1.8e-119 433.3 341 63.9
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 2.4e-119 433.0 339 69.3
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 3.1e-119 432.6 330 69.1
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 2.6e-118 429.5 344 66.3
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 1.7e-117 426.8 327 70.3
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 1.4e-116 423.7 340 68.5
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 1.9e-116 423.3 340 68.2
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 4.2e-116 422.2 353 64.0
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 4.2e-116 422.2 325 68.0
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 1.6e-115 420.2 368 61.4
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.6e-115 420.2 328 67.4
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 4.6e-115 418.7 341 65.1
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 1.3e-114 417.2 362 62.4
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 5.1e-114 415.2 366 63.4
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 8.7e-114 414.5 297 71.7
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 6.2e-112 408.3 343 65.3
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 4.0e-111 405.6 345 64.6
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 2.0e-110 403.3 347 61.1
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 4.4e-110 402.1 347 60.8
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 1.7e-109 400.2 345 62.9
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 4.2e-108 395.6 344 64.5
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 9.3e-108 394.4 282 72.0
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 1.7e-106 390.2 346 60.4
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.9e-105 386.7 269 75.1
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 6.9e-103 378.3 347 58.2
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 7.6e-102 374.8 348 60.3
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 1.2e-99 367.5 345 61.4
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 6.0e-99 365.2 288 66.3
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 3.9e-98 362.5 338 58.9
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 1.9e-97 360.1 325 60.0
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.9e-93 345.5 309 65.7
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 2.0e-86 323.6 273 64.8
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 3.9e-82 309.3 385 50.6
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 1.1e-76 291.2 153 94.8
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 2.8e-72 276.6 209 68.4
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 5.1e-66 255.8 148 96.6
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 5.7e-57 225.7 127 87.4
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 3.2e-52 209.9 363 40.2
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 1.0e-50 204.9 124 82.3
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 2.6e-49 200.3 353 38.5
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 1.8e-47 194.1 263 46.8
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 8.6e-37 158.7 351 32.8
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 2.0e-30 137.5 104 71.2
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 6.6e-29 132.5 88 76.1
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 6.8e-26 122.5 93 68.8
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.1e-23 115.2 81 72.8
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 1.6e-22 111.3 92 65.2
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 3.3e-20 103.6 152 42.1
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.2e-09 68.6 87 41.4
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 8.4e-08 62.4 41 70.7


User provided reference genes

Program Settings