Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 3.2e-209 731.5 365 100.0
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.6e-208 729.2 365 99.5
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.1e-193 679.9 366 93.7
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.7e-189 666.0 396 86.1
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.4e-188 662.1 396 86.1
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.4e-188 662.1 396 86.1
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 5.7e-182 641.0 366 88.0
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 3.7e-181 638.3 366 88.0
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 1.2e-136 490.3 362 70.4
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 1.7e-133 479.9 365 67.7
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 4.3e-129 465.3 369 66.1
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 8.4e-109 397.9 368 59.0
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 2.4e-108 396.4 367 57.8
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 7.1e-108 394.8 370 58.6
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 1.3e-106 390.6 367 58.3
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 3.0e-106 389.4 367 58.3
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 5.1e-106 388.7 367 58.3
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 8.7e-106 387.9 368 56.2
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 5.6e-105 385.2 367 54.5
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 1.6e-104 383.6 363 56.7
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.4e-103 380.6 379 54.6
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 5.3e-103 378.6 365 57.0
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 6.9e-103 378.3 379 54.6
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 1.2e-102 377.5 361 57.3
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 2.0e-102 376.7 367 55.0
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 3.4e-102 375.9 361 57.1
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 1.0e-101 374.4 367 56.9
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 8.4e-101 371.3 366 56.0
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 2.5e-100 369.8 366 56.0
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.5e-100 369.8 366 55.7
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 9.3e-100 367.9 366 54.1
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 2.1e-99 366.7 372 54.8
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 4.6e-99 365.5 367 54.2
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 6.0e-99 365.2 363 56.2
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 3.0e-98 362.8 365 52.6
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 1.9e-97 360.1 361 54.0
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.9e-97 360.1 364 54.4
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 8.2e-96 354.8 361 54.3
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 8.2e-96 354.8 361 54.3
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 1.4e-95 354.0 373 53.1
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 1.4e-95 354.0 381 53.0
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 1.4e-95 354.0 381 53.0
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 6.9e-95 351.7 375 51.7
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 9.0e-95 351.3 360 54.7
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 3.4e-94 349.4 362 54.4
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 1.3e-93 347.4 363 52.9
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.9e-92 343.6 367 51.2
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 2.5e-92 343.2 367 51.8
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 3.2e-92 342.8 369 50.7
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 5.5e-92 342.0 371 52.3
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 7.2e-92 341.7 322 58.1
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 7.2e-92 341.7 330 55.2
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 8.7e-90 334.7 367 51.2
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.1e-89 334.3 375 51.7
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 4.3e-89 332.4 304 55.9
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.6e-88 330.5 380 51.1
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 2.8e-88 329.7 363 51.8
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 3.7e-88 329.3 365 51.5
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 4.8e-88 328.9 367 50.1
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 4.8e-88 328.9 357 51.0
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 8.2e-88 328.2 366 51.1
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 3.1e-87 326.2 357 51.0
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 6.9e-87 325.1 359 50.1
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 1.5e-86 323.9 357 50.7
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 2.6e-86 323.2 364 49.5
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 2.6e-86 323.2 335 55.8
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 5.9e-86 322.0 367 48.5
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 5.9e-86 322.0 358 52.0
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 7.7e-86 321.6 362 49.7
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.0e-85 321.2 360 51.7
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 2.2e-85 320.1 369 51.2
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 5.0e-85 318.9 361 50.1
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 8.5e-85 318.2 357 50.1
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 8.5e-85 318.2 352 49.1
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 1.1e-84 317.8 365 49.0
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.2e-84 316.2 364 48.9
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 4.2e-84 315.8 267 60.3
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 4.2e-84 315.8 366 47.3
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 9.4e-84 314.7 376 48.1
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 3.6e-83 312.8 377 48.5
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 6.1e-83 312.0 364 49.7
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 1.0e-82 311.2 360 50.3
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 1.0e-82 311.2 361 48.5
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.4e-82 310.8 360 50.3
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 5.1e-82 308.9 359 48.7
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 8.8e-82 308.1 290 53.8
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 1.1e-81 307.8 375 48.5
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 2.0e-81 307.0 362 47.5
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 7.4e-81 305.1 365 45.5
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 7.4e-81 305.1 359 49.3
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 2.8e-80 303.1 369 47.2
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 3.7e-80 302.8 274 57.7
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 4.8e-80 302.4 378 46.0
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 4.8e-80 302.4 365 45.2
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 8.2e-80 301.6 357 47.9
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 1.1e-79 301.2 266 56.8
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.8e-79 300.4 360 48.9
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.2e-78 297.7 367 49.9
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 3.4e-78 296.2 368 44.3
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 3.4e-78 296.2 357 48.5
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 3.4e-78 296.2 357 48.2
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 4.5e-78 295.8 359 48.7
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 7.7e-78 295.0 357 47.9
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.0e-77 294.7 411 44.3
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 1.1e-76 291.2 361 48.2
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 1.4e-76 290.8 360 46.9
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 1.4e-76 290.8 271 54.2
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 3.2e-76 289.7 374 46.0
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 9.4e-76 288.1 359 47.4
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 9.4e-76 288.1 365 45.8
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.6e-75 287.3 278 52.2
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 1.6e-75 287.3 365 47.4
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 1.6e-75 287.3 361 46.5
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 2.7e-75 286.6 361 46.8
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 4.7e-75 285.8 358 46.9
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 6.1e-75 285.4 359 47.6
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 7.9e-75 285.0 358 46.4
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 1.0e-74 284.6 358 45.8
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 2.3e-74 283.5 358 45.5
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 1.1e-73 281.2 357 44.5
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 2.0e-73 280.4 358 45.8
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 3.1e-71 273.1 357 46.2
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 7.0e-71 271.9 366 44.8
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 8.5e-69 265.0 227 57.7
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.1e-68 264.6 364 45.9
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 1.1e-68 264.6 315 47.9
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 3.2e-68 263.1 357 43.7
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.8e-66 257.3 322 46.0
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 8.8e-66 255.0 371 42.0
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 2.0e-65 253.8 321 47.7
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 9.7e-65 251.5 274 47.8
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 9.7e-65 251.5 274 47.8
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 2.8e-64 250.0 274 47.8
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 8.2e-64 248.4 316 47.8
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 7.0e-63 245.4 377 41.1
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 3.5e-62 243.0 320 44.1
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 1.3e-61 241.1 358 42.7
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 2.9e-61 240.0 265 48.7
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 4.2e-60 236.1 285 45.3
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 3.4e-57 226.5 318 42.5
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.7e-56 223.0 356 40.2
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 8.3e-56 221.9 430 35.3
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 1.7e-53 214.2 305 42.0
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 2.0e-49 200.7 324 38.6
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 2.0e-49 200.7 263 44.5
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 7.5e-49 198.7 318 41.5
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 2.2e-48 197.2 215 50.2
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 5.9e-46 189.1 241 44.0
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 2.3e-45 187.2 326 36.8
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 4.0e-42 176.4 184 52.7
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 5.9e-38 162.5 251 38.2
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 4.7e-35 152.9 212 45.3
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 8.9e-34 148.7 168 42.9
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 1.7e-32 144.4 449 26.9
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 1.7e-32 144.4 185 45.9
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 2.9e-32 143.7 147 51.7
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.5e-28 130.6 156 50.6
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 7.3e-28 129.0 178 42.1
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 7.3e-28 129.0 283 32.5
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 4.7e-27 126.3 204 39.2
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 8.1e-27 125.6 162 46.9
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.2e-25 121.7 161 44.7
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 5.4e-23 112.8 155 40.6
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 3.0e-21 107.1 77 57.1
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 3.9e-21 106.7 198 38.4
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 1.1e-20 105.1 107 45.8
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 5.8e-17 92.8 288 27.4
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 2.9e-16 90.5 153 36.6
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 4.1e-15 86.7 84 46.4
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.2e-14 85.1 76 50.0
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 3.5e-14 83.6 97 44.3
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 6.0e-14 82.8 101 47.5
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 3.0e-13 80.5 111 38.7
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 7.3e-12 75.9 77 48.1
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 6.2e-11 72.8 132 31.8
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 5.8e-09 66.2 44 70.5
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 7.6e-09 65.9 47 63.8
Cfa022807 Carpinus fangiana HOM05D003781 ORTHO05D004299 1.3e-08 65.1 318 25.5
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 1.7e-08 64.7 86 50.0
TAR375G0299 Trochodendron aralioides HOM05D067126 ORTHO05D415426 3.8e-08 63.5 45 64.4
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.7e-06 57.4 132 39.4


User provided reference genes

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