Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g20210 Fragaria vesca HOM05D009874 ORTHO05D010825 2.3e-122 442.2 220 100.0
FAN14G2012 Fragaria x ananassa HOM05D009874 ORTHO05D010825 5.8e-121 437.6 220 99.1
FAN05G5202 Fragaria x ananassa HOM05D009874 ORTHO05D010825 1.6e-118 429.5 220 97.3
FAN05G0496 Fragaria x ananassa HOM05D009874 ORTHO05D010825 3.5e-118 428.3 220 96.8
RcHm_v2.0_Chr3g0475751 Rosa chinensis HOM05D009874 ORTHO05D010825 2.8e-115 418.7 220 92.7
Prupe.7G096800 Prunus persica HOM05D009874 ORTHO05D010825 2.3e-93 345.9 221 76.5
MD12G1039000 Malus domestica HOM05D009874 ORTHO05D010825 3.4e-89 332.0 222 74.3
Potri.016G071100 Populus trichocarpa HOM05D009874 ORTHO05D010825 1.4e-37 160.6 196 46.4
Thecc.05G103100 Theobroma cacao HOM05D009874 ORTHO05D010825 2.8e-30 136.3 205 38.5
COL.COLO4_29585 Corchorus olitorius HOM05D009874 ORTHO05D010825 1.8e-29 133.7 203 36.0
Gorai.002G235700 Gossypium raimondii HOM05D009874 ORTHO05D010825 3.5e-25 119.4 201 33.8
Gohir.D01G191800 Gossypium hirsutum HOM05D009874 ORTHO05D010825 5.9e-25 118.6 201 33.8
Cpa.g.sc104.42 Carica papaya HOM05D009874 ORTHO05D010825 2.3e-24 116.7 168 35.7
Haze_08137 Corylus avellana HOM05D009874 ORTHO05D010825 1.5e-23 114.0 181 32.6
Cfa012525 Carpinus fangiana HOM05D009874 ORTHO05D010825 5.6e-23 112.1 205 29.3
Cfa012524 Carpinus fangiana HOM05D009874 ORTHO05D010825 2.1e-22 110.2 188 30.3
Gohir.A01G201900 Gossypium hirsutum HOM05D009874 ORTHO05D010825 4.7e-22 109.0 201 32.8
Haze_08138 Corylus avellana HOM05D009874 ORTHO05D010825 4.0e-21 105.9 190 31.1
QL12p001338 Quercus lobata HOM05D009874 ORTHO05D010825 5.2e-21 105.5 184 34.8
Gorai.007G048400 Gossypium raimondii HOM05D009874 ORTHO05D010825 9.8e-20 101.3 156 33.3
COL.COLO4_32398 Corchorus olitorius HOM05D010991 ORTHO05D010825 9.2e-18 94.7 192 28.6
Gohir.D11G045050 Gossypium hirsutum HOM05D009874 ORTHO05D010825 2.7e-17 93.2 138 33.3
Ciclev10013330m.g Citrus clementina HOM05D015120 ORTHO05D010666 5.0e-16 89.0 157 34.4
Atru.chr8.1376 Acer truncatum HOM05D015120 ORTHO05D010666 1.5e-15 87.4 204 31.4
Prupe.7G048100 Prunus persica HOM05D010052 ORTHO05D010666 2.5e-15 86.7 214 29.4
COL.COLO4_17013 Corchorus olitorius HOM05D009874 ORTHO05D010825 9.5e-15 84.7 198 31.3
Thecc.02G128800 Theobroma cacao HOM05D015680 ORTHO05D010825 2.1e-14 83.6 180 31.1
Thecc.01G085100 Theobroma cacao HOM05D015120 ORTHO05D010666 4.7e-14 82.4 198 28.3
Cpa.g.sc104.41 Carica papaya HOM05D015120 ORTHO05D010825 6.2e-14 82.0 142 34.5
Gohir.D10G099500 Gossypium hirsutum HOM05D015120 ORTHO05D010666 1.4e-13 80.9 175 30.3
Gorai.011G109200 Gossypium raimondii HOM05D015120 ORTHO05D010666 1.8e-13 80.5 175 30.3
Thecc.02G128900 Theobroma cacao HOM05D010991 ORTHO05D010825 8.9e-13 78.2 179 29.1
FAN14G1910 Fragaria x ananassa HOM05D010052 ORTHO05D010666 1.2e-12 77.8 185 29.7
FvH4_6g24970 Fragaria vesca HOM05D010052 ORTHO05D010666 3.4e-12 76.3 207 28.5
Gohir.A10G088400 Gossypium hirsutum HOM05D015120 ORTHO05D010666 4.4e-12 75.9 175 28.6
Prupe.7G096700 Prunus persica HOM05D010052 ORTHO05D010666 4.4e-12 75.9 169 30.2
TAR633G0472 Trochodendron aralioides HOM05D002687 ORTHO05D002052 4.4e-12 75.9 206 25.7
Prupe.7G096500 Prunus persica HOM05D010052 ORTHO05D010666 5.8e-12 75.5 169 29.6
Thecc.02G129000 Theobroma cacao HOM05D010991 ORTHO05D010825 1.3e-11 74.3 171 33.3
COL.COLO4_08619 Corchorus olitorius HOM05D010991 ORTHO05D010825 1.7e-11 73.9 188 27.1
FAN09G4754 Fragaria x ananassa HOM05D010052 ORTHO05D010666 1.7e-11 73.9 207 29.0
COL.COLO4_09301 Corchorus olitorius HOM05D010991 ORTHO05D010825 2.2e-11 73.6 164 27.4
PGR004G1626 Punica granatum HOM05D008136 ORTHO05D002052 2.2e-11 73.6 196 26.5
COL.COLO4_08616 Corchorus olitorius HOM05D010991 ORTHO05D010825 2.9e-11 73.2 162 25.9
Gorai.009G325100 Gossypium raimondii HOM05D009874 ORTHO05D010825 2.9e-11 73.2 98 35.7
MD12G1087900 Malus domestica HOM05D010052 ORTHO05D010666 3.7e-11 72.8 175 28.6
Sabra06G0157200 Salix brachista HOM05D008136 ORTHO05D002052 8.3e-11 71.6 163 26.4
Oeu055534.1 Olea europaea HOM05D012176 ORTHO05D014468 1.9e-10 70.5 147 31.3
VMungo0720G1813 Vigna mungo HOM05D013176 ORTHO05D010666 2.4e-10 70.1 205 25.9
MD14G1037900 Malus domestica HOM05D010052 ORTHO05D010666 7.0e-10 68.6 170 28.8
COL.COLO4_04928 Corchorus olitorius HOM05D010991 ORTHO05D010825 9.2e-10 68.2 208 24.0
MD14G1037800 Malus domestica HOM05D010052 ORTHO05D010666 1.2e-09 67.8 219 26.9
Oeu050407.1 Olea europaea HOM05D012176 ORTHO05D014468 1.2e-09 67.8 147 29.9
Rhsim03G0065900 Rhododendron simsii HOM05D008136 ORTHO05D002052 1.2e-09 67.8 149 30.9
TPR.G35574 Trifolium pratense HOM05D013176 ORTHO05D010666 1.2e-09 67.8 184 25.5
COL.COLO4_33306 Corchorus olitorius HOM05D010991 ORTHO05D010825 1.6e-09 67.4 162 25.9
Eucgr.A02595 Eucalyptus grandis HOM05D008136 ORTHO05D002052 1.6e-09 67.4 157 28.0
Lj1g0003825 Lotus japonicus HOM05D013176 ORTHO05D010666 2.7e-09 66.6 195 23.6
MD07G1151300 Malus domestica HOM05D010052 ORTHO05D010666 2.7e-09 66.6 214 25.2
QL12p000905 Quercus lobata HOM05D030319 ORTHO05D024879 2.7e-09 66.6 152 27.6
TAR636G0890 Trochodendron aralioides HOM05D002687 ORTHO05D002052 4.6e-09 65.9 188 25.5
VMungo1383G3225 Vigna mungo HOM05D013176 ORTHO05D010666 4.6e-09 65.9 151 26.5
COL.COLO4_08617 Corchorus olitorius HOM05D010991 ORTHO05D010825 6.0e-09 65.5 160 26.2
COL.COLO4_15065 Corchorus olitorius HOM05D010991 ORTHO05D010825 6.0e-09 65.5 162 24.7
FAN04G3011 Fragaria x ananassa HOM05D010052 ORTHO05D010666 6.0e-09 65.5 213 24.4
COL.COLO4_08618 Corchorus olitorius HOM05D010991 ORTHO05D010825 1.0e-08 64.7 166 25.9
Dinv31752 Davidia involucrata HOM05D002687 ORTHO05D022209 1.0e-08 64.7 154 24.7
TPR.G35559 Trifolium pratense HOM05D013176 ORTHO05D010666 1.0e-08 64.7 200 22.5
COL.COLO4_33193 Corchorus olitorius HOM05D010991 ORTHO05D010825 1.3e-08 64.3 127 27.6
TWI53G0569 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 1.3e-08 64.3 197 25.4
Cpa.g.sc129.12 Carica papaya HOM05D015120 ORTHO05D010666 1.7e-08 63.9 171 26.3
TPR.G35562 Trifolium pratense HOM05D013176 ORTHO05D010666 1.7e-08 63.9 196 21.9
VMungo1309G2852 Vigna mungo HOM05D013176 ORTHO05D010666 1.7e-08 63.9 188 25.0
MD12G1039100 Malus domestica HOM05D010052 ORTHO05D010666 3.0e-08 63.2 221 25.3
Ca_09053_v3 Cicer arietinum L. HOM05D013176 ORTHO05D010666 5.0e-08 62.4 157 22.3
COL.COLO4_03320 Corchorus olitorius HOM05D010991 ORTHO05D010825 5.0e-08 62.4 127 26.8
CsaV3_3G037890 Cucumis sativus L. HOM05D008136 ORTHO05D002052 5.0e-08 62.4 152 27.0
QL07p036911 Quercus lobata HOM05D008136 ORTHO05D002052 5.0e-08 62.4 206 24.3
Nn6g34711 Nelumbo nucifera HOM05D002687 ORTHO05D002052 6.6e-08 62.0 164 26.2
TPR.G35572 Trifolium pratense HOM05D013176 ORTHO05D010666 6.6e-08 62.0 195 21.0
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 8.6e-08 61.6 161 24.8
Thhalv10010982m.g Eutrema salsugineum HOM05D008136 ORTHO05D002052 8.6e-08 61.6 189 28.6
FAN18G4184 Fragaria x ananassa HOM05D003158 ORTHO05D003560 8.6e-08 61.6 201 23.9
Potri.006G204000 Populus trichocarpa HOM05D008136 ORTHO05D002052 8.6e-08 61.6 201 22.9
SGA_v2.0_scaffold31G12844 Striga asiatica HOM05D012176 ORTHO05D014468 8.6e-08 61.6 195 21.0
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 8.6e-08 61.6 162 24.7
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 8.6e-08 61.6 209 24.9
TAR636G1837 Trochodendron aralioides HOM05D002687 ORTHO05D002052 8.6e-08 61.6 160 25.6
FAN18G3409 Fragaria x ananassa HOM05D010052 ORTHO05D010666 1.1e-07 61.2 198 24.2
AT3G52460 Arabidopsis thaliana HOM05D008136 ORTHO05D002052 1.5e-07 60.8 191 28.3
A09p45540 Brassica napus HOM05D008136 ORTHO05D002052 1.5e-07 60.8 190 26.3
BraA09t40016Z Brassica rapa HOM05D008136 ORTHO05D002052 1.5e-07 60.8 190 26.3
ClCG10G018400 Citrullus lanatus HOM05D008136 ORTHO05D002052 1.5e-07 60.8 152 27.0
BcaB01g00366 Brassica carinata HOM05D008136 ORTHO05D002052 1.9e-07 60.5 190 25.8
Carub.0005s1885 Capsella rubella HOM05D008136 ORTHO05D002052 1.9e-07 60.5 190 25.8
Duzib106G1810 Durio zibethinus HOM05D008136 ORTHO05D002052 1.9e-07 60.5 197 22.3
FvH4_5g22901 Fragaria vesca HOM05D010052 ORTHO05D010666 1.9e-07 60.5 198 24.2
Manes.08G032700 Manihot esculenta HOM05D008136 ORTHO05D002052 1.9e-07 60.5 204 25.0
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.9e-07 60.5 218 22.9
QL01p011302 Quercus lobata HOM05D002687 ORTHO05D002052 2.5e-07 60.1 209 24.4
QL07p036916 Quercus lobata HOM05D008136 ORTHO05D002052 2.5e-07 60.1 192 24.5
MELO3C009533.2 Cucumis melo HOM05D008136 ORTHO05D002052 3.3e-07 59.7 152 26.3
Lalb_Chr25g0288021 Lupinus albus HOM05D013176 ORTHO05D010666 3.3e-07 59.7 196 24.0
Lsat_1_v5_gn_3_114060 Lactuca sativa HOM05D002687 ORTHO05D002052 4.3e-07 59.3 201 27.9
MD03G1153500 Malus domestica HOM05D002687 ORTHO05D002052 4.3e-07 59.3 165 26.1
Oeu052622.2 Olea europaea HOM05D022101 ORTHO05D022209 4.3e-07 59.3 203 24.1
Sp5g09840 Schrenkiella parvula HOM05D008136 ORTHO05D002052 7.3e-07 58.5 191 25.7
BcaC07g39611 Brassica carinata HOM05D008136 ORTHO05D002052 9.5e-07 58.2 189 25.9
C08p27700 Brassica napus HOM05D008136 ORTHO05D002052 9.5e-07 58.2 189 25.9
BolC8t50390H Brassica oleracea HOM05D008136 ORTHO05D002052 9.5e-07 58.2 189 25.9
AL5G33110 Arabidopsis lyrata HOM05D008136 ORTHO05D002052 1.2e-06 57.8 195 27.2
COL.COLO4_37410 Corchorus olitorius HOM05D010991 ORTHO05D010825 1.2e-06 57.8 127 28.3
Prupe.7G096300 Prunus persica HOM05D010052 ORTHO05D010666 1.2e-06 57.8 162 28.4
RcHm_v2.0_Chr5g0073621 Rosa chinensis HOM05D010052 ORTHO05D010666 1.2e-06 57.8 198 24.2
RcHm_v2.0_Chr7g0211331 Rosa chinensis HOM05D010052 ORTHO05D010666 1.2e-06 57.8 198 24.7
Thecc.02G128700 Theobroma cacao HOM05D010991 ORTHO05D010825 1.2e-06 57.8 72 36.1
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 1.6e-06 57.4 199 26.6
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.1e-06 57.0 211 25.6
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.1e-06 57.0 211 25.6
Sabra09G0012300 Salix brachista HOM05D002687 ORTHO05D002052 3.6e-06 56.2 197 23.9
Potri.016G071200 Populus trichocarpa HOM05D038355 ORTHO05D002052 4.7e-06 55.8 163 23.3
HanXRQChr12g0382031 Helianthus annuus HOM05D002687 ORTHO05D002052 6.2e-06 55.5 218 27.1
MD00G1129000 Malus domestica HOM05D002687 ORTHO05D002052 6.2e-06 55.5 167 25.1
BraA03t13990Z Brassica rapa HOM05D008136 ORTHO05D002052 8.1e-06 55.1 164 27.4


User provided reference genes

Program Settings