Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 4.4e-99 364.8 204 100.0
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.1e-86 323.6 184 98.4
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 6.8e-84 314.3 184 96.2
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 4.4e-83 311.6 184 95.1
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 4.1e-81 305.1 184 94.6
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 5.1e-79 298.1 204 85.8
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 4.6e-32 142.1 188 57.4
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 2.9e-26 122.9 185 49.2
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 1.4e-25 120.6 193 53.9
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 6.1e-24 115.2 180 50.0
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 1.5e-22 110.5 193 49.7
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 5.7e-22 108.6 185 48.6
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 9.7e-22 107.8 200 42.5
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 4.8e-21 105.5 236 41.1
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 7.0e-20 101.7 158 46.2
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 2.0e-19 100.1 181 43.6
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 5.9e-19 98.6 136 50.0
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 1.0e-18 97.8 96 64.6
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 1.7e-18 97.1 180 43.3
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 1.7e-18 97.1 184 44.6
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 5.0e-18 95.5 181 43.1
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 6.5e-18 95.1 109 58.7
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 8.5e-18 94.7 163 44.8
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 1.1e-17 94.4 81 65.4
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.5e-17 93.2 221 38.9
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 3.2e-17 92.8 104 56.7
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 7.2e-17 91.7 225 36.9
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 7.2e-17 91.7 160 45.6
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 2.1e-16 90.1 164 47.6
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 3.6e-16 89.4 146 48.6
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 3.6e-16 89.4 183 41.0
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 4.7e-16 89.0 189 38.6
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 1.4e-15 87.4 167 49.1
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 1.4e-15 87.4 189 38.6
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 1.4e-15 87.4 96 58.3
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 4.0e-15 85.9 189 37.6
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 5.2e-15 85.5 81 59.3
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 5.2e-15 85.5 136 47.8
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 6.7e-15 85.1 185 37.8
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 1.5e-14 84.0 109 54.1
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 1.5e-14 84.0 188 44.1
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 1.5e-14 84.0 165 43.6
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 2.0e-14 83.6 140 45.0
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 2.0e-14 83.6 159 45.9
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 2.6e-14 83.2 112 54.5
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 4.4e-14 82.4 102 53.9
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 4.4e-14 82.4 159 45.3
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 4.4e-14 82.4 183 38.8
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 4.4e-14 82.4 191 37.7
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 5.7e-14 82.0 71 64.8
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 9.7e-14 81.3 179 40.8
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 1.3e-13 80.9 71 64.8
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 1.3e-13 80.9 71 64.8
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.7e-13 80.5 170 40.6
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 1.7e-13 80.5 87 55.2
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 2.2e-13 80.1 152 45.4
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 2.2e-13 80.1 70 64.3
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 2.8e-13 79.7 154 42.9
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 2.8e-13 79.7 154 46.1
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 3.7e-13 79.3 133 44.4
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 3.7e-13 79.3 81 56.8
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 4.8e-13 79.0 142 45.1
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 6.3e-13 78.6 183 38.8
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 6.3e-13 78.6 118 51.7
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 6.3e-13 78.6 99 55.6
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.1e-12 77.8 186 39.8
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 1.8e-12 77.0 99 54.5
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 2.4e-12 76.6 138 45.7
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 2.4e-12 76.6 178 38.2
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 2.4e-12 76.6 83 57.8
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 5.3e-12 75.5 161 40.4
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 5.3e-12 75.5 184 40.2
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 5.3e-12 75.5 164 39.6
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 7.0e-12 75.1 170 38.8
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 7.0e-12 75.1 161 41.6
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 7.0e-12 75.1 121 45.5
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 7.0e-12 75.1 99 49.5
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 9.1e-12 74.7 180 38.9
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 9.1e-12 74.7 100 50.0
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 9.1e-12 74.7 143 43.4
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 1.2e-11 74.3 76 55.3
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 1.6e-11 73.9 163 39.9
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 1.6e-11 73.9 78 59.0
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 2.0e-11 73.6 136 42.6
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 3.5e-11 72.8 151 42.4
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 3.5e-11 72.8 178 40.4
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 3.5e-11 72.8 110 48.2
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 3.5e-11 72.8 97 52.6
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 4.5e-11 72.4 55 67.3
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 5.9e-11 72.0 95 50.5
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 5.9e-11 72.0 162 41.4
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 1.0e-10 71.2 69 58.0
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 1.0e-10 71.2 158 40.5
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 1.3e-10 70.9 65 61.5
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 1.3e-10 70.9 65 61.5
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 1.3e-10 70.9 180 39.4
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 2.2e-10 70.1 164 40.2
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 2.2e-10 70.1 164 40.2
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 2.2e-10 70.1 164 40.2
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 2.9e-10 69.7 159 42.1
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 3.8e-10 69.3 179 36.3
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 3.8e-10 69.3 81 56.8
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 5.0e-10 68.9 189 34.9
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 8.5e-10 68.2 110 48.2
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 8.5e-10 68.2 69 50.7
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 1.1e-09 67.8 164 40.2
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 1.1e-09 67.8 155 40.6
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 3.2e-09 66.2 140 38.6
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 5.5e-09 65.5 161 36.6
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 5.5e-09 65.5 135 42.2
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 7.2e-09 65.1 65 55.4
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 7.2e-09 65.1 134 40.3
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 7.2e-09 65.1 139 44.6
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 2.1e-08 63.5 214 34.6
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 3.6e-08 62.8 171 38.0
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 4.7e-08 62.4 157 38.9
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 3.0e-07 59.7 161 34.8
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 5.2e-07 58.9 159 36.5
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 5.2e-07 58.9 118 39.0
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 8.8e-07 58.2 199 31.7
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 1.2e-06 57.8 171 33.9
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 2.0e-06 57.0 81 44.4
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 2.0e-06 57.0 149 37.6
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 3.4e-06 56.2 81 44.4
RhsimUnG0120900 Rhododendron simsii HOM05D004973 ORTHO05D006119 4.4e-06 55.8 38 71.1
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 4.4e-06 55.8 184 35.3
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 4.4e-06 55.8 81 50.6
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 5.7e-06 55.5 181 33.7


User provided reference genes

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