Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 2.0e-113 412.5 226 100.0
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.0e-113 412.5 226 100.0
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.2e-107 392.5 226 94.7
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 9.2e-106 387.1 226 95.6
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 1.0e-104 383.6 226 88.9
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 2.4e-69 266.2 230 62.6
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 2.0e-68 263.1 230 58.7
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 1.4e-66 256.9 227 58.1
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 5.5e-66 255.0 225 58.2
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.6e-65 253.4 223 58.3
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 1.6e-65 253.4 231 64.9
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 1.6e-65 253.4 226 58.4
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 7.9e-65 251.1 228 57.9
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.3e-64 250.4 223 57.8
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 2.3e-64 249.6 227 55.1
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 2.3e-64 249.6 226 54.0
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 3.0e-64 249.2 220 58.2
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 2.5e-63 246.1 227 58.6
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 5.6e-63 245.0 231 68.0
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 1.3e-62 243.8 229 55.9
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 1.6e-62 243.4 231 67.1
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 2.1e-62 243.0 213 57.3
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 1.1e-61 240.7 225 53.8
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 1.1e-61 240.7 228 54.4
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.4e-61 240.4 228 54.4
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 2.4e-61 239.6 229 54.1
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 2.4e-61 239.6 226 53.5
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 6.9e-61 238.0 231 55.4
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 2.0e-60 236.5 228 65.8
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 2.6e-60 236.1 228 52.2
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 3.4e-60 235.7 220 55.0
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 2.2e-59 233.0 255 50.6
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 2.2e-59 233.0 223 52.9
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 3.8e-59 232.3 231 54.1
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 4.9e-59 231.9 229 55.5
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 8.4e-59 231.1 223 56.5
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 1.1e-58 230.7 214 56.1
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.1e-58 230.7 218 54.1
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 1.1e-58 230.7 229 52.0
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.1e-58 230.7 227 64.3
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 1.1e-58 230.7 229 51.5
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 3.2e-58 229.2 215 57.7
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 3.2e-58 229.2 221 53.4
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 5.5e-58 228.4 219 53.0
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 9.3e-58 227.6 223 52.9
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 2.7e-57 226.1 194 56.7
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.5e-57 225.7 233 56.2
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.5e-57 225.7 229 57.6
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 6.0e-57 224.9 227 52.4
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 7.9e-57 224.6 215 53.5
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 7.9e-57 224.6 218 53.7
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 7.9e-57 224.6 230 52.2
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 1.0e-56 224.2 219 53.4
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 1.3e-56 223.8 219 50.2
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 1.3e-56 223.8 219 52.5
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 1.3e-56 223.8 224 56.7
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 1.8e-56 223.4 229 53.7
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 1.8e-56 223.4 230 51.7
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 3.9e-56 222.2 227 57.3
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 5.1e-56 221.9 211 53.6
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 5.1e-56 221.9 195 56.9
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 6.7e-56 221.5 219 53.0
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 6.7e-56 221.5 215 53.0
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 6.7e-56 221.5 257 48.6
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 8.7e-56 221.1 225 51.1
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 8.7e-56 221.1 194 56.2
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 1.1e-55 220.7 189 57.7
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 1.1e-55 220.7 210 54.8
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 1.5e-55 220.3 212 55.7
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 1.9e-55 219.9 253 49.0
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 1.9e-55 219.9 223 52.5
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 4.3e-55 218.8 216 54.6
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 4.3e-55 218.8 212 53.8
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 5.7e-55 218.4 220 52.3
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 7.4e-55 218.0 226 50.0
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 9.6e-55 217.6 227 52.4
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 1.3e-54 217.2 212 56.1
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.6e-54 216.9 215 53.0
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 2.8e-54 216.1 223 52.0
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 3.7e-54 215.7 208 52.9
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 6.3e-54 214.9 211 55.0
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 6.3e-54 214.9 215 52.6
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 6.3e-54 214.9 256 46.5
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 6.3e-54 214.9 211 50.7
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 8.2e-54 214.5 215 54.0
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 8.2e-54 214.5 215 51.2
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 8.2e-54 214.5 197 53.3
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 8.2e-54 214.5 220 51.8
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 1.1e-53 214.2 209 53.6
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 1.4e-53 213.8 215 52.1
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 2.4e-53 213.0 227 55.1
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 4.1e-53 212.2 216 51.9
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 5.3e-53 211.8 215 52.1
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 1.2e-52 210.7 215 52.1
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.5e-52 210.3 220 49.1
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 2.0e-52 209.9 215 51.6
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 4.5e-52 208.8 227 47.6
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 1.0e-51 207.6 227 49.8
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 1.0e-51 207.6 224 48.2
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 1.3e-51 207.2 212 53.3
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 3.8e-51 205.7 223 49.8
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 5.0e-51 205.3 221 49.8
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.1e-50 204.1 244 44.7
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 1.1e-50 204.1 244 46.7
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 1.1e-50 204.1 229 48.9
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 1.9e-50 203.4 201 52.2
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 1.9e-50 203.4 194 51.5
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 4.2e-50 202.2 155 63.9
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 2.1e-49 199.9 197 53.8
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 6.1e-49 198.4 211 48.8
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 6.1e-49 198.4 235 52.8
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 7.9e-49 198.0 197 52.8
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 1.0e-48 197.6 155 61.3
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 2.3e-48 196.4 209 47.4
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 3.9e-48 195.7 210 47.1
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 6.7e-48 194.9 211 53.6
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 7.4e-47 191.4 218 49.1
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.3e-46 190.7 222 45.9
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 8.2e-46 188.0 209 45.9
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.8e-45 186.8 207 47.3
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 4.1e-45 185.7 217 50.2
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 4.5e-44 182.2 230 50.0
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 7.7e-44 181.4 228 45.6
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 1.3e-43 180.6 230 49.1
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 3.8e-43 179.1 231 44.6
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 1.4e-42 177.2 268 39.2
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 3.2e-42 176.0 215 49.8
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 9.4e-42 174.5 187 49.7
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 1.2e-41 174.1 232 44.4
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 1.2e-41 174.1 194 47.4
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 2.7e-41 172.9 198 54.0
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 2.7e-41 172.9 231 42.9
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 3.6e-41 172.6 233 53.2
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 4.6e-41 172.2 195 46.2
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 7.9e-41 171.4 195 45.6
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 1.8e-40 170.2 143 58.0
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.8e-40 170.2 213 42.3
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 2.3e-40 169.9 215 51.6
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 2.3e-40 169.9 210 45.7
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 2.0e-39 166.8 215 51.2
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 4.3e-39 165.6 243 40.7
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 7.4e-39 164.9 209 45.0
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 7.4e-39 164.9 206 44.2
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 2.2e-38 163.3 209 44.5
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.4e-37 160.6 214 42.1
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.4e-37 160.6 214 42.1
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 3.1e-37 159.5 138 55.8
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 5.9e-36 155.2 252 46.4
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 8.5e-35 151.4 208 40.4
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.9e-34 150.2 138 52.2
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 5.5e-34 148.7 143 53.8
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 4.4e-31 139.0 141 56.7
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.1e-29 132.5 140 47.1
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 1.6e-28 130.6 164 45.1
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 6.5e-27 125.2 188 38.3
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 2.7e-25 119.8 138 45.7
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 8.0e-25 118.2 121 49.6
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 1.5e-23 114.0 231 34.6
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 1.5e-23 114.0 205 34.6
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 5.3e-21 105.5 144 40.3
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 7.0e-21 105.1 144 38.9
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 9.1e-21 104.8 183 35.5
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 4.0e-16 89.4 107 40.2
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 3.1e-13 79.7 67 50.7
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 5.4e-13 79.0 71 57.7
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 3.5e-12 76.3 80 50.0
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 3.8e-11 72.8 60 61.7
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 5.5e-10 68.9 161 29.8
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.2e-09 67.8 38 86.8
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 4.0e-08 62.8 35 74.3
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 8.8e-08 61.6 35 71.4
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 5.7e-07 58.9 115 34.8
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 2.2e-06 57.0 111 33.3
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 6.3e-06 55.5 30 76.7
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 6.3e-06 55.5 35 65.7


User provided reference genes

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