Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 1.3e-241 839.3 441 100.0
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.0e-237 825.5 441 98.6
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 3.5e-226 788.1 523 83.0
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 7.8e-218 760.4 442 91.2
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 9.6e-192 673.7 437 79.4
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 4.9e-188 661.4 436 79.4
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 1.1e-182 643.7 436 78.0
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 1.1e-174 617.1 436 75.5
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.5e-173 613.2 436 74.8
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 2.9e-172 609.0 451 72.9
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 1.9e-171 606.3 436 73.9
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 4.2e-171 605.1 436 73.6
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 2.3e-169 599.4 436 72.9
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 8.7e-169 597.4 432 74.1
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 1.6e-167 593.2 436 72.2
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.8e-167 592.4 436 72.2
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 2.0e-165 586.3 435 71.0
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 2.9e-164 582.4 417 73.9
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 8.5e-164 580.9 434 72.4
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 1.1e-163 580.5 436 70.0
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 1.1e-163 580.5 437 70.5
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 7.2e-163 577.8 427 71.9
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 1.6e-162 576.6 433 71.1
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 2.7e-162 575.9 437 70.0
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 3.6e-162 575.5 432 72.7
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 6.1e-162 574.7 438 70.8
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 1.1e-160 570.5 433 71.1
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 4.3e-160 568.5 433 69.5
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 5.7e-160 568.2 434 69.1
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 5.7e-160 568.2 434 70.0
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 5.7e-160 568.2 440 70.0
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 2.4e-158 562.8 438 69.2
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 3.1e-158 562.4 432 69.0
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 4.1e-158 562.0 433 70.0
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 6.9e-158 561.2 438 67.8
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 9.1e-158 560.8 433 69.7
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 1.7e-156 556.6 426 68.1
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 1.7e-156 556.6 439 67.9
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 2.2e-156 556.2 432 69.4
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 2.2e-156 556.2 436 66.7
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 3.8e-156 555.4 432 68.8
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 1.9e-155 553.1 431 68.0
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 1.9e-155 553.1 426 68.1
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 2.5e-155 552.7 431 68.4
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 3.2e-155 552.4 431 68.0
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 9.4e-155 550.8 431 68.2
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 1.2e-154 550.4 436 68.3
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 1.6e-154 550.1 435 67.4
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 6.1e-154 548.1 438 66.2
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 3.0e-153 545.8 437 67.0
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 3.0e-153 545.8 426 66.7
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 1.1e-152 543.9 426 66.7
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 2.0e-152 543.1 430 67.2
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 3.3e-152 542.3 435 67.6
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 7.4e-152 541.2 441 66.0
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.3e-151 540.4 470 64.9
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 1.3e-151 540.4 437 65.7
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 2.2e-151 539.7 441 65.8
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 2.8e-151 539.3 433 66.5
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 2.8e-151 539.3 425 67.5
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 3.7e-151 538.9 425 67.5
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 4.8e-151 538.5 375 75.7
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 1.8e-150 536.6 432 66.4
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 2.4e-150 536.2 433 65.6
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 3.1e-150 535.8 437 66.8
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 4.1e-150 535.4 433 66.5
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 4.1e-150 535.4 436 67.0
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 9.1e-150 534.3 437 65.9
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 1.2e-149 533.9 426 66.9
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.5e-149 533.5 433 65.1
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 4.5e-149 531.9 425 67.8
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 5.9e-149 531.6 425 67.5
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 7.7e-149 531.2 437 66.6
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.9e-148 529.3 436 66.3
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 5.0e-148 528.5 440 66.1
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 1.4e-147 526.9 416 65.4
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 1.9e-147 526.6 433 64.9
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 5.5e-147 525.0 431 64.7
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 9.4e-147 524.2 437 65.4
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.2e-146 523.9 442 66.5
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 1.2e-146 523.9 413 67.3
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 1.6e-146 523.5 428 65.9
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 2.7e-146 522.7 432 65.5
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 1.0e-145 520.8 433 65.6
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 1.0e-145 520.8 433 65.6
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 1.4e-145 520.4 434 63.1
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 1.1e-144 517.3 430 64.9
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 7.4e-144 514.6 444 63.1
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 1.7e-143 513.5 434 63.6
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 2.8e-143 512.7 425 62.8
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 3.7e-143 512.3 426 63.8
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 1.1e-142 510.8 426 67.1
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 1.8e-142 510.0 433 63.3
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 2.0e-141 506.5 447 60.6
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.6e-141 506.1 437 64.8
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 2.6e-141 506.1 442 62.4
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 3.5e-141 505.8 444 63.7
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 4.5e-141 505.4 437 63.4
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 4.5e-141 505.4 474 61.6
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 6.5e-140 501.5 425 64.5
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 8.5e-140 501.1 437 62.5
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 1.9e-139 500.0 368 69.3
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 2.5e-139 499.6 434 61.3
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 4.2e-139 498.8 423 67.1
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 7.2e-139 498.0 435 64.4
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 9.4e-139 497.7 418 62.7
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 1.0e-137 494.2 424 64.2
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 3.0e-137 492.7 433 60.0
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 5.7e-136 488.4 431 61.7
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 7.0e-134 481.5 438 59.6
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 9.1e-134 481.1 405 62.7
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 2.7e-130 469.5 426 60.1
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 1.4e-129 467.2 436 58.9
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 2.2e-127 459.9 372 65.1
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 3.3e-123 446.0 516 52.1
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.6e-122 443.7 435 58.2
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 8.0e-122 441.4 433 61.0
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 7.5e-120 434.9 431 57.5
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 1.1e-118 431.0 412 57.0
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 2.0e-117 426.8 426 56.3
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 4.9e-111 405.6 378 64.3
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 2.7e-109 399.8 313 70.0
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 1.4e-105 387.5 303 68.6
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 7.5e-104 381.7 298 65.1
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 3.7e-103 379.4 433 52.9
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 3.7e-103 379.4 437 52.9
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 3.0e-100 369.8 341 58.1
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 7.8e-93 345.1 282 63.5
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.2e-90 337.8 435 44.6
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 5.2e-89 332.4 439 44.6
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 2.9e-79 300.1 250 65.2
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.3e-71 274.6 421 46.1
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 3.8e-71 273.1 182 73.6
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 1.6e-69 267.7 327 50.2
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 3.5e-69 266.5 181 72.9
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 6.2e-66 255.8 204 69.1
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.5e-59 234.6 178 65.2
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 5.3e-57 226.1 176 64.8
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.3e-50 204.9 183 61.2
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.2e-50 204.1 161 72.7
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 1.1e-43 181.8 242 47.5
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.8e-42 177.2 147 71.4
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 7.7e-40 169.1 139 57.6
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 1.1e-33 148.7 120 70.0
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 3.1e-33 147.1 113 68.1
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 7.0e-33 146.0 80 98.8
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 8.0e-29 132.5 90 70.0
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.7e-26 124.8 104 63.5
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.0e-20 105.5 123 56.9
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 3.7e-18 97.1 330 29.1
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.1e-14 85.5 113 43.4
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 1.4e-12 78.6 40 100.0
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 8.8e-12 75.9 410 24.9
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 1.8e-09 68.2 53 66.0
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 1.2e-08 65.5 224 25.9
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 1.7e-07 61.6 398 22.4
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 3.8e-07 60.5 228 25.0
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 8.6e-07 59.3 198 28.3
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 8.6e-07 59.3 217 24.9
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 1.1e-06 58.9 274 25.5
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 1.5e-06 58.5 198 26.3
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 1.9e-06 58.2 194 25.3
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.9e-06 58.2 194 26.3
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 4.3e-06 57.0 274 24.1
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 5.6e-06 56.6 194 25.3
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 7.3e-06 56.2 196 25.5
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 9.5e-06 55.8 218 25.7


User provided reference genes

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