Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 1.7e-57 225.7 111 100.0
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.4e-51 206.1 111 92.8
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 4.6e-50 201.1 111 89.2
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 3.8e-28 128.3 93 73.1
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 3.8e-28 128.3 93 73.1
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 1.1e-27 126.7 93 72.0
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.1e-27 126.7 93 72.0
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 3.2e-27 125.2 93 71.0
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 9.3e-27 123.6 93 71.0
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 2.1e-26 122.5 93 68.8
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 2.1e-26 122.5 93 71.0
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 2.7e-26 122.1 92 68.5
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 7.9e-26 120.6 111 60.4
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 7.9e-26 120.6 89 70.8
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 1.3e-25 119.8 93 67.7
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 1.3e-25 119.8 89 73.0
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.8e-25 119.4 93 68.8
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 1.8e-25 119.4 93 68.8
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 3.0e-25 118.6 93 67.7
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 3.9e-25 118.2 108 60.2
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 3.9e-25 118.2 93 68.8
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 5.1e-25 117.9 93 66.7
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 6.7e-25 117.5 108 62.0
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 6.7e-25 117.5 89 69.7
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 6.7e-25 117.5 93 66.7
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 6.7e-25 117.5 93 66.7
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 6.7e-25 117.5 112 58.9
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 8.7e-25 117.1 93 67.7
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 8.7e-25 117.1 108 62.0
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 8.7e-25 117.1 99 62.6
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 8.7e-25 117.1 88 69.3
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 8.7e-25 117.1 108 60.2
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 1.1e-24 116.7 89 68.5
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 1.1e-24 116.7 99 63.6
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 1.1e-24 116.7 88 67.0
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.5e-24 116.3 99 62.6
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 1.5e-24 116.3 88 69.3
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 1.9e-24 115.9 88 69.3
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 1.9e-24 115.9 88 68.2
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 1.9e-24 115.9 88 68.2
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 1.9e-24 115.9 88 68.2
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 1.9e-24 115.9 88 69.3
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 1.9e-24 115.9 108 61.1
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 1.9e-24 115.9 88 69.3
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 2.5e-24 115.5 93 66.7
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 2.5e-24 115.5 93 67.7
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 2.5e-24 115.5 93 65.6
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 2.5e-24 115.5 92 66.3
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 4.3e-24 114.8 89 68.5
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 4.3e-24 114.8 108 59.3
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 4.3e-24 114.8 89 66.3
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 5.6e-24 114.4 108 58.3
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 7.4e-24 114.0 108 59.3
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 7.4e-24 114.0 108 59.3
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 7.4e-24 114.0 89 67.4
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 9.6e-24 113.6 85 69.4
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 9.6e-24 113.6 99 61.6
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 9.6e-24 113.6 99 61.6
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 9.6e-24 113.6 89 67.4
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 9.6e-24 113.6 89 67.4
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 9.6e-24 113.6 88 65.9
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 9.6e-24 113.6 109 61.5
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 1.3e-23 113.2 89 67.4
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 1.3e-23 113.2 108 60.2
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 1.3e-23 113.2 99 60.6
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 1.6e-23 112.8 89 66.3
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 1.6e-23 112.8 88 67.0
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.6e-23 112.8 89 67.4
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 1.6e-23 112.8 108 58.3
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 2.1e-23 112.5 88 68.2
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 2.1e-23 112.5 88 68.2
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 2.1e-23 112.5 93 64.5
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 2.1e-23 112.5 88 68.2
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 2.1e-23 112.5 93 64.5
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 2.1e-23 112.5 88 69.3
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 2.1e-23 112.5 108 58.3
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 2.1e-23 112.5 93 64.5
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 2.1e-23 112.5 88 67.0
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 2.8e-23 112.1 108 61.1
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 2.8e-23 112.1 108 61.1
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 2.8e-23 112.1 108 61.1
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 2.8e-23 112.1 88 67.0
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 3.7e-23 111.7 89 67.4
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 3.7e-23 111.7 89 67.4
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 3.7e-23 111.7 89 67.4
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 3.7e-23 111.7 88 69.3
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 3.7e-23 111.7 99 59.6
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 3.7e-23 111.7 89 64.0
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 3.7e-23 111.7 88 65.9
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 3.7e-23 111.7 89 64.0
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 4.8e-23 111.3 88 67.0
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 4.8e-23 111.3 88 67.0
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 4.8e-23 111.3 88 67.0
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 6.2e-23 110.9 89 67.4
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 8.2e-23 110.5 89 67.4
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 8.2e-23 110.5 89 66.3
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 8.2e-23 110.5 108 59.3
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 8.2e-23 110.5 90 68.9
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 8.2e-23 110.5 89 66.3
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 1.1e-22 110.2 88 67.0
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 1.1e-22 110.2 88 67.0
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 1.1e-22 110.2 88 67.0
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 1.1e-22 110.2 88 67.0
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 1.1e-22 110.2 88 67.0
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 1.1e-22 110.2 89 67.4
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 1.4e-22 109.8 88 65.9
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 1.4e-22 109.8 88 67.0
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 1.8e-22 109.4 88 65.9
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 2.4e-22 109.0 88 67.0
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 2.4e-22 109.0 88 63.6
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 3.1e-22 108.6 88 67.0
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 4.0e-22 108.2 89 65.2
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 5.3e-22 107.8 89 64.0
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 1.2e-21 106.7 88 67.0
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 1.5e-21 106.3 75 70.7
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 1.5e-21 106.3 81 67.9
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 2.6e-21 105.5 88 64.8
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 3.4e-21 105.1 89 61.8
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 7.6e-21 104.0 88 59.1
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 1.3e-20 103.2 122 51.6
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 2.9e-20 102.1 77 70.1
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 2.9e-20 102.1 88 56.8
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 4.9e-20 101.3 89 64.0
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 4.9e-20 101.3 88 58.0
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 8.4e-20 100.5 89 59.6
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 2.5e-19 99.0 77 67.5
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 9.3e-19 97.1 88 58.0
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.2e-18 96.7 88 62.5
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 2.1e-18 95.9 88 60.2
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 2.7e-18 95.5 77 64.9
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 3.5e-18 95.1 88 54.5
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 5.1e-17 91.3 54 77.8
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 6.7e-17 90.9 55 76.4
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 2.5e-16 89.0 55 74.5
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 3.3e-16 88.6 106 50.0
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 3.3e-16 88.6 64 70.3
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 4.3e-16 88.2 55 70.9
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 4.1e-14 81.6 77 59.7
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.5e-13 79.7 123 41.5
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 7.6e-13 77.4 92 44.6
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.0e-12 77.0 59 61.0
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 1.7e-12 76.3 77 54.5
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 2.9e-12 75.5 68 55.9
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 5.0e-12 74.7 73 47.9
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 6.5e-12 74.3 43 79.1
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 8.8e-09 63.9 64 57.8
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 9.7e-08 60.5 76 48.7
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 8.2e-07 57.4 75 41.3
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 2.4e-06 55.8 95 34.7
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 6.9e-06 54.3 88 43.2


User provided reference genes

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