Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 1.1e-139 500.0 253 100.0
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 6.2e-119 431.0 227 96.5
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.8e-117 424.5 220 97.7
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.8e-111 404.8 221 93.7
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.8e-109 397.9 222 91.0
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 8.4e-108 394.0 227 89.4
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 3.2e-107 392.1 222 90.5
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 4.2e-107 391.7 222 90.1
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 9.3e-107 390.6 222 89.2
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 7.1e-99 364.4 222 82.9
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 1.4e-83 313.5 223 73.5
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 7.9e-82 307.8 220 72.3
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 8.8e-81 304.3 222 69.8
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 2.0e-77 293.1 223 70.0
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 2.6e-77 292.7 244 65.2
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 5.9e-77 291.6 222 68.0
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 1.0e-76 290.8 222 71.6
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 1.0e-76 290.8 223 68.2
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 2.2e-76 289.7 222 69.8
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 2.2e-76 289.7 220 67.3
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 5.0e-76 288.5 222 68.0
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 5.0e-76 288.5 218 66.1
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 8.5e-76 287.7 220 68.2
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 8.5e-76 287.7 165 86.1
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 1.9e-75 286.6 222 69.4
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 1.9e-75 286.6 221 68.8
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 2.5e-75 286.2 221 69.7
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 2.5e-75 286.2 220 67.7
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 5.5e-75 285.0 222 65.8
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 5.5e-75 285.0 220 67.3
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 1.2e-74 283.9 205 69.8
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 1.2e-74 283.9 205 69.8
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 1.6e-74 283.5 228 67.1
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 2.1e-74 283.1 221 67.0
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 3.6e-74 282.3 220 67.7
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 3.6e-74 282.3 220 67.7
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 7.9e-74 281.2 220 65.9
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 7.9e-74 281.2 221 67.0
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 1.0e-73 280.8 222 68.9
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 1.4e-73 280.4 223 65.5
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.4e-73 280.4 252 61.1
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 1.8e-73 280.0 217 66.8
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 3.0e-73 279.3 214 67.3
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.9e-73 278.9 226 65.0
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 3.9e-73 278.9 222 67.6
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 5.2e-73 278.5 187 73.3
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 5.2e-73 278.5 165 83.6
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 1.1e-72 277.3 221 66.5
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 1.5e-72 276.9 222 68.5
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.0e-72 276.6 222 64.0
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 2.0e-72 276.6 187 72.2
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.6e-72 276.2 222 63.5
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 3.3e-72 275.8 184 75.0
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 7.4e-72 274.6 255 59.2
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 1.3e-71 273.9 187 71.1
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 1.3e-71 273.9 187 71.7
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 1.3e-71 273.9 187 71.7
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 1.3e-71 273.9 187 71.7
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 2.8e-71 272.7 166 79.5
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 2.8e-71 272.7 187 72.2
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 3.7e-71 272.3 187 71.1
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 3.7e-71 272.3 187 71.1
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 3.7e-71 272.3 187 71.1
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 3.7e-71 272.3 178 74.7
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 4.8e-71 271.9 200 67.5
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 1.1e-70 270.8 186 71.0
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 1.1e-70 270.8 186 71.0
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.1e-70 270.8 221 65.2
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 1.4e-70 270.4 222 66.2
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 3.1e-70 269.2 182 75.3
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 4.1e-70 268.9 218 64.2
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 4.1e-70 268.9 166 77.7
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 4.1e-70 268.9 218 66.1
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 5.3e-70 268.5 215 65.6
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 7.0e-70 268.1 186 74.7
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 7.0e-70 268.1 226 63.3
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 7.0e-70 268.1 220 64.1
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 9.1e-70 267.7 188 71.3
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 9.1e-70 267.7 221 64.3
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 9.1e-70 267.7 217 66.8
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 1.2e-69 267.3 188 70.7
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 2.0e-69 266.5 223 66.8
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 3.5e-69 265.8 218 65.6
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 3.5e-69 265.8 203 64.0
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 3.5e-69 265.8 136 94.9
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 5.9e-69 265.0 187 69.5
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 5.9e-69 265.0 220 62.7
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 1.3e-68 263.8 220 62.7
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 1.7e-68 263.5 220 62.7
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 2.9e-68 262.7 222 63.1
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 2.9e-68 262.7 220 63.6
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 5.0e-68 261.9 165 76.4
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 1.1e-67 260.8 166 77.1
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 4.2e-67 258.8 167 76.6
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 9.4e-67 257.7 190 67.9
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 9.4e-67 257.7 190 67.9
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.1e-66 256.5 170 72.9
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.7e-66 255.4 169 74.0
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 6.1e-66 255.0 165 75.2
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 1.0e-65 254.2 168 72.6
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 1.0e-65 254.2 221 62.4
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 4.0e-65 252.3 170 71.2
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 4.0e-65 252.3 169 72.8
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 1.2e-64 250.8 170 72.9
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 1.5e-64 250.4 182 69.2
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.5e-64 250.4 226 60.6
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 4.4e-64 248.8 184 67.9
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 5.7e-64 248.4 186 67.2
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 2.2e-63 246.5 159 76.7
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 4.8e-63 245.4 184 67.4
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.1e-59 234.2 195 65.1
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 2.5e-59 233.0 159 76.1
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 3.2e-59 232.6 201 63.2
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 4.2e-59 232.3 172 64.0
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 1.2e-58 230.7 186 62.9
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 1.2e-56 224.2 221 56.6
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 3.4e-56 222.6 167 65.3
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 4.4e-56 222.2 167 68.3
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 2.4e-54 216.5 166 66.9
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 4.1e-54 215.7 136 75.7
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 4.1e-54 215.7 136 77.9
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.5e-53 212.6 167 64.7
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 2.9e-52 209.5 136 72.1
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 3.8e-52 209.1 128 79.7
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 5.0e-52 208.8 207 57.0
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 6.5e-52 208.4 136 72.1
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 4.2e-51 205.7 134 76.1
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 9.5e-51 204.5 136 71.3
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 6.1e-50 201.8 176 59.1
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 2.3e-49 199.9 176 58.0
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 3.0e-49 199.5 171 60.8
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.5e-48 197.2 136 69.9
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 5.7e-48 195.3 164 61.6
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 1.7e-47 193.7 136 72.1
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 1.1e-46 191.0 136 72.8
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 4.0e-41 172.6 185 49.7
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 1.2e-40 171.0 175 49.7
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.9e-39 166.4 123 69.9
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.9e-39 166.4 143 62.9
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.9e-39 166.4 143 62.9
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 1.1e-38 164.5 164 53.7
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 7.8e-37 158.3 123 68.3
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.3e-36 157.5 159 57.2
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 9.2e-30 134.8 82 89.0
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.9e-27 127.1 118 59.3
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.1e-26 123.6 74 79.7
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 2.8e-26 123.2 74 79.7
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 4.7e-26 122.5 117 58.1
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.3e-25 120.2 117 56.4
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 5.2e-25 119.0 83 67.5
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.9e-23 113.2 100 58.0
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.6e-21 107.5 100 57.0
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 6.2e-18 95.5 90 56.7
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 6.8e-17 92.0 128 38.3
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.3e-12 77.0 68 57.4
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 6.6e-12 75.5 44 79.5
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 2.1e-10 70.5 44 70.5
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 1.2e-08 64.7 104 39.4
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 5.8e-08 62.4 54 59.3
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 4.2e-06 56.2 37 62.2
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 4.2e-06 56.2 37 62.2


User provided reference genes

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