Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g08830 Fragaria vesca HOM05D018614 ORTHO05D045472 4.7e-183 644.4 330 100.0
FAN14G3353 Fragaria x ananassa HOM05D018614 ORTHO05D045472 1.1e-107 394.0 207 98.1
RcHm_v2.0_Chr3g0459101 Rosa chinensis HOM05D018614 ORTHO05D035385 1.5e-85 320.5 310 58.7
FAN14G1178 Fragaria x ananassa HOM05D018614 ORTHO05D035385 5.3e-70 268.9 301 53.5
FvH4_6g08840 Fragaria vesca HOM05D018614 ORTHO05D035385 5.9e-69 265.4 301 53.2
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 1.9e-19 100.9 152 39.5
RcHm_v2.0_Chr3g0459181 Rosa chinensis HOM05D002804 ORTHO05D003755 7.3e-19 99.0 145 42.1
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.6e-18 97.8 136 42.6
FAN02G4619 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.8e-18 97.1 136 42.6
FvH4_6g08940 Fragaria vesca HOM05D002804 ORTHO05D003755 3.6e-18 96.7 136 42.6
FAN05G3459 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.0e-17 93.2 134 41.8
FvH4_6g08870 Fragaria vesca HOM05D002804 ORTHO05D003755 4.4e-16 89.7 136 39.7
FAN14G5607 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.4e-16 89.7 136 39.7
MD16G1177800 Malus domestica HOM05D002804 ORTHO05D003755 1.3e-15 88.2 136 41.2
FAN12G4232 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.7e-15 87.8 149 36.2
FvH4_4g16590 Fragaria vesca HOM05D002804 ORTHO05D003755 2.2e-15 87.4 149 36.2
FAN02G0182 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.2e-15 87.4 136 39.0
FAN05G2457 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.2e-15 87.4 136 39.0
RcHm_v2.0_Chr7g0193131 Rosa chinensis HOM05D002804 ORTHO05D003755 3.7e-15 86.7 148 35.1
RcHm_v2.0_Chr3g0459161 Rosa chinensis HOM05D002804 ORTHO05D003755 4.9e-15 86.3 136 39.0
MD16G1193600 Malus domestica HOM05D002804 ORTHO05D003755 6.4e-15 85.9 141 40.4
FvH4_7g08991 Fragaria vesca HOM05D002804 ORTHO05D003755 1.9e-14 84.3 155 33.5
FAN06G4842 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.9e-14 84.3 155 33.5
Dinv30965 Davidia involucrata HOM05D002804 ORTHO05D003755 3.2e-14 83.6 139 35.3
RcHm_v2.0_Chr3g0457771 Rosa chinensis HOM05D002804 ORTHO05D003755 3.2e-14 83.6 146 34.9
FAN18G0864 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.7e-13 80.5 151 33.8
RcHm_v2.0_Chr3g0459201 Rosa chinensis HOM05D002804 ORTHO05D003755 2.7e-13 80.5 141 37.6
FAN04G1488 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.6e-13 79.7 153 34.6
FAN08G1215 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.3e-12 78.2 186 29.6
FAN08G2676 Fragaria x ananassa HOM05D002804 ORTHO05D025426 3.9e-12 76.6 137 34.3
FAN08G1735 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.6e-12 75.9 149 32.9
RcHm_v2.0_Chr3g0459221 Rosa chinensis HOM05D002804 ORTHO05D003755 6.6e-12 75.9 134 36.6
RcHm_v2.0_Chr1g0342791 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-11 75.1 128 33.6
RcHm_v2.0_Chr7g0236591 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-11 75.1 141 34.8
Solyc01g102470.2 Solanum lycopersicum HOM05D002804 ORTHO05D003755 2.5e-11 73.9 147 30.6
RcHm_v2.0_Chr7g0235981 Rosa chinensis HOM05D002804 ORTHO05D003755 4.3e-11 73.2 195 28.2
Sopen01g044910 Solanum pennellii HOM05D002804 ORTHO05D003755 7.3e-11 72.4 144 30.6
FvH4_5g34900 Fragaria vesca HOM05D002804 ORTHO05D025426 9.6e-11 72.0 137 32.8
FvH4_5g35322 Fragaria vesca HOM05D002804 ORTHO05D003755 9.6e-11 72.0 148 31.1
FAN13G2866 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.6e-11 72.0 148 33.8
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 9.6e-11 72.0 154 31.8
Nitab4.5_0004090g0070 Nicotiana tabacum HOM05D002804 ORTHO05D003755 2.1e-10 70.9 144 32.6
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.6e-10 70.1 209 32.5
FAN18G3080 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.6e-10 70.1 113 39.8
Peaxi162Scf01065g00002 Petunia axillaris HOM05D002804 ORTHO05D003755 4.7e-10 69.7 127 34.6
Atru.chr12.1496 Acer truncatum HOM05D002804 ORTHO05D003755 1.4e-09 68.2 180 28.3
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 1.4e-09 68.2 122 34.4
RcHm_v2.0_Chr7g0236171 Rosa chinensis HOM05D002804 ORTHO05D003755 1.8e-09 67.8 143 30.8
RcHm_v2.0_Chr0c11g0499471 Rosa chinensis HOM05D002804 ORTHO05D003755 2.4e-09 67.4 143 31.5
RcHm_v2.0_Chr0c11g0499511 Rosa chinensis HOM05D002804 ORTHO05D003755 2.4e-09 67.4 144 33.3
Aa31LG1G21630 Aethionema arabicum HOM05D007539 ORTHO05D009315 3.1e-09 67.0 182 27.5
FvH4_5g35320 Fragaria vesca HOM05D002804 ORTHO05D003755 6.8e-09 65.9 143 31.5
Nitab4.5_0004889g0010 Nicotiana tabacum HOM05D002804 ORTHO05D003755 6.8e-09 65.9 144 31.2
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 8.9e-09 65.5 154 30.5
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 8.9e-09 65.5 216 31.5
FAN10G1430 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.2e-08 65.1 155 30.3
RcHm_v2.0_Chr7g0218371 Rosa chinensis HOM05D002804 ORTHO05D003755 1.2e-08 65.1 143 30.8
FAN10G1692 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.5e-08 64.7 155 30.3
RcHm_v2.0_Chr7g0235851 Rosa chinensis HOM05D002804 ORTHO05D003755 1.5e-08 64.7 139 30.2
RcHm_v2.0_Chr0c11g0499481 Rosa chinensis HOM05D002804 ORTHO05D003755 2.0e-08 64.3 144 29.9
RcHm_v2.0_Chr7g0236241 Rosa chinensis HOM05D002804 ORTHO05D003755 2.0e-08 64.3 144 29.9
FAN02G1170 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.6e-08 63.9 219 31.1
FAN18G3590 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.6e-08 63.9 148 30.4
FAN25G3079 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.6e-08 63.9 146 30.1
RcHm_v2.0_Chr0c11g0499461 Rosa chinensis HOM05D002804 ORTHO05D003755 2.6e-08 63.9 144 30.6
RcHm_v2.0_Chr3g0459121 Rosa chinensis HOM05D002804 ORTHO05D003755 2.6e-08 63.9 124 35.5
RcHm_v2.0_Chr7g0236331 Rosa chinensis HOM05D002804 ORTHO05D003755 2.6e-08 63.9 140 27.9
FAN18G4551 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.4e-08 63.5 149 30.2
RcHm_v2.0_Chr7g0235841 Rosa chinensis HOM05D002804 ORTHO05D025426 3.4e-08 63.5 135 31.9
QL03p011442 Quercus lobata HOM05D002804 ORTHO05D003755 4.4e-08 63.2 143 31.5
Sed0019381 Sechium edule HOM05D002804 ORTHO05D003755 4.4e-08 63.2 124 32.3
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 5.8e-08 62.8 159 30.8
Psat6g157320 Pisum sativum HOM05D002804 ORTHO05D003755 5.8e-08 62.8 153 31.4
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 7.6e-08 62.4 124 33.1
FvH4_5g31070 Fragaria vesca HOM05D002804 ORTHO05D003755 7.6e-08 62.4 149 30.9
FAN03G3123 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.6e-08 62.4 155 30.3
FvH4_5g35060 Fragaria vesca HOM05D002804 ORTHO05D003755 9.9e-08 62.0 142 28.9
FvH4_6g08080 Fragaria vesca HOM05D002804 ORTHO05D003755 9.9e-08 62.0 107 34.6
FAN18G3729 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.9e-08 62.0 141 31.2
Ca_10220_v3 Cicer arietinum L. HOM05D002804 ORTHO05D003755 1.3e-07 61.6 153 30.7
RcHm_v2.0_Chr0c11g0499501 Rosa chinensis HOM05D002804 ORTHO05D003755 1.3e-07 61.6 140 26.4
RcHm_v2.0_Chr3g0459171 Rosa chinensis HOM05D002804 ORTHO05D003755 1.7e-07 61.2 140 29.3
RcHm_v2.0_Chr7g0236051 Rosa chinensis HOM05D002804 ORTHO05D003755 1.7e-07 61.2 140 26.4
FAN18G3994 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.2e-07 60.8 149 30.9
RcHm_v2.0_Chr7g0236201 Rosa chinensis HOM05D002804 ORTHO05D003755 2.2e-07 60.8 113 32.7
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 2.9e-07 60.5 156 29.5
FAN08G3255 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.8e-07 60.1 152 29.6
FvH4_5g35253 Fragaria vesca HOM05D002804 ORTHO05D003755 4.9e-07 59.7 144 29.9
Medtr1g085280 Medicago truncatula HOM05D002804 ORTHO05D003755 4.9e-07 59.7 153 30.7
Sc14g0008950 Simmondsia chinensis HOM05D002804 ORTHO05D003755 4.9e-07 59.7 133 32.3
AT5G03560 Arabidopsis thaliana HOM05D002804 ORTHO05D003755 6.4e-07 59.3 145 31.0
FvH4_5g35050 Fragaria vesca HOM05D002804 ORTHO05D003755 6.4e-07 59.3 149 28.2
FvH4_5g35300 Fragaria vesca HOM05D002804 ORTHO05D003755 6.4e-07 59.3 149 28.9
FAN02G1490 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.4e-07 59.3 148 31.1
RcHm_v2.0_Chr0c11g0499411 Rosa chinensis HOM05D002804 ORTHO05D003755 6.4e-07 59.3 94 35.1
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 1.1e-06 58.5 153 29.4
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 2.4e-06 57.4 153 28.8
FAN13G1238 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.4e-06 57.4 78 37.2
FvH4_5g35000 Fragaria vesca HOM05D002804 ORTHO05D003755 3.2e-06 57.0 149 27.5
FvH4_5g31080 Fragaria vesca HOM05D002804 ORTHO05D003755 4.2e-06 56.6 139 28.8
FvH4_5g05670 Fragaria vesca HOM05D002804 ORTHO05D003755 7.1e-06 55.8 148 29.7
RcHm_v2.0_Chr1g0342991 Rosa chinensis HOM05D002804 ORTHO05D003755 9.3e-06 55.5 88 36.4


User provided reference genes

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