Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 3.8e-182 641.3 314 100.0
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 3.8e-166 588.2 287 99.0
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 5.5e-157 557.8 292 92.5
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 7.1e-157 557.4 276 97.5
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 7.4e-154 547.4 276 96.4
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 6.1e-132 474.6 287 80.1
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 4.1e-128 461.8 287 79.4
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 2.1e-116 422.9 312 66.7
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 4.7e-116 421.8 296 68.6
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 3.0e-115 419.1 287 70.4
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 4.0e-115 418.7 290 69.3
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 5.7e-114 414.8 297 66.7
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 5.7e-114 414.8 291 68.4
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 2.8e-113 412.5 291 68.0
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 6.3e-113 411.4 293 67.9
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 8.3e-113 411.0 294 66.3
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 8.3e-113 411.0 292 68.2
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.4e-112 410.2 291 68.0
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 2.4e-112 409.5 292 66.1
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 4.1e-112 408.7 295 67.1
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 2.0e-111 406.4 291 65.6
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 3.8e-110 402.1 299 65.9
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 5.0e-110 401.7 294 66.0
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 6.5e-110 401.4 292 65.4
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 6.5e-110 401.4 289 67.8
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 8.5e-110 401.0 275 69.1
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 1.1e-109 400.6 312 63.1
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 1.1e-109 400.6 287 65.9
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 2.5e-109 399.4 290 67.2
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 2.1e-108 396.4 303 63.4
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 1.8e-107 393.3 285 64.9
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.2e-106 390.6 292 63.7
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 5.7e-106 388.3 291 61.9
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 5.7e-106 388.3 285 64.6
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 9.8e-106 387.5 275 66.2
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 9.8e-106 387.5 291 62.9
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.3e-105 387.1 293 63.1
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 1.8e-104 383.3 275 68.0
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 5.4e-104 381.7 288 64.6
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 9.1e-104 380.9 288 62.5
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 2.0e-103 379.8 290 63.1
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 2.7e-103 379.4 285 62.1
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 2.7e-103 379.4 288 63.5
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 2.3e-102 376.3 290 62.1
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 2.9e-102 375.9 268 65.7
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 3.8e-102 375.6 289 65.1
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 8.6e-102 374.4 283 64.7
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 2.5e-101 372.9 276 62.3
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 2.5e-101 372.9 268 66.0
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 3.3e-101 372.5 287 60.3
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 4.3e-101 372.1 290 61.0
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 7.2e-101 371.3 253 67.6
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 9.5e-101 370.9 289 63.0
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 9.5e-101 370.9 293 59.7
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 1.2e-100 370.5 288 59.7
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 2.8e-100 369.4 273 61.2
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 6.1e-100 368.2 281 60.9
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 6.1e-100 368.2 277 61.0
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 1.0e-99 367.5 280 63.2
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.8e-99 366.7 262 63.0
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 1.8e-99 366.7 289 61.2
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 2.3e-99 366.3 246 69.5
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 5.2e-99 365.2 268 65.7
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 5.2e-99 365.2 293 61.4
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 8.9e-99 364.4 277 60.3
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 1.5e-98 363.6 273 61.9
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 2.0e-98 363.2 293 58.7
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 3.4e-98 362.5 291 60.8
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 7.5e-98 361.3 278 60.1
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 1.7e-97 360.1 309 56.3
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 1.7e-97 360.1 255 64.3
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 4.9e-97 358.6 282 61.3
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 6.4e-97 358.2 291 60.5
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.8e-96 356.7 300 56.3
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 7.0e-96 354.8 288 59.7
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 4.6e-95 352.1 317 53.9
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 4.6e-95 352.1 276 62.7
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 5.9e-95 351.7 289 58.5
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 8.6e-94 347.8 292 58.9
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 8.6e-94 347.8 228 71.1
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 3.3e-93 345.9 248 67.7
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 3.6e-92 342.4 288 56.6
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 2.3e-91 339.7 253 61.7
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 1.4e-88 330.5 274 56.2
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 9.2e-88 327.8 276 56.9
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 3.5e-87 325.9 265 58.1
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 7.8e-87 324.7 283 55.8
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 1.0e-86 324.3 287 52.6
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 2.9e-81 306.2 276 54.0
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 8.3e-81 304.7 238 61.3
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 5.4e-80 302.0 249 55.0
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 1.6e-76 290.4 272 50.7
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 2.8e-76 289.7 262 55.0
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 2.9e-73 279.6 287 48.4
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 2.4e-72 276.6 288 49.3
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.3e-70 270.8 286 47.6
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 1.7e-70 270.4 269 49.4
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 5.1e-70 268.9 274 49.3
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.1e-69 267.7 298 47.3
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 1.5e-69 267.3 286 46.9
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 1.9e-69 266.9 269 49.4
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 1.9e-69 266.9 269 49.4
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 2.5e-69 266.5 269 49.8
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 3.3e-69 266.2 255 49.0
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 2.8e-68 263.1 277 49.5
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 3.6e-68 262.7 289 46.7
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 1.4e-67 260.8 276 48.6
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 5.2e-67 258.8 269 48.3
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 1.2e-66 257.7 252 50.4
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 2.6e-66 256.5 272 54.0
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 5.8e-66 255.4 289 45.3
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 5.8e-66 255.4 289 45.7
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 7.6e-66 255.0 268 46.6
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 1.3e-65 254.2 277 49.5
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 1.7e-65 253.8 295 46.8
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.3e-49 201.1 243 42.8
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 3.8e-49 199.5 271 39.9
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 6.4e-49 198.7 238 42.9
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 4.2e-48 196.1 199 49.7
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 3.9e-46 189.5 238 44.1
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.0e-41 174.9 222 42.3
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 1.9e-40 170.6 193 46.6
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 1.8e-38 164.1 193 46.6
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 1.8e-38 164.1 174 46.6
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 5.1e-38 162.5 273 39.6
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 5.7e-37 159.1 240 40.4
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 2.1e-36 157.1 203 46.3
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 2.1e-36 157.1 206 44.2
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 1.1e-35 154.8 222 42.3
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 1.4e-35 154.5 178 46.1
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 2.4e-35 153.7 206 43.2
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 9.0e-35 151.8 254 38.2
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 2.2e-33 147.1 140 52.1
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 1.2e-31 141.4 174 45.4
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 2.3e-30 137.1 140 51.4
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 5.1e-30 136.0 274 35.4
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 5.1e-30 136.0 140 46.4
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.4e-27 127.9 89 66.3
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 9.0e-27 125.2 193 39.9
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 9.0e-27 125.2 193 39.9
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 2.1e-23 114.0 93 61.3
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 6.7e-22 109.0 195 33.3
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 2.8e-20 103.6 165 37.6
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 8.2e-20 102.1 73 65.8
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 1.7e-17 94.4 147 42.2
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 8.5e-17 92.0 61 62.3
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 8.5e-17 92.0 61 62.3
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.6e-10 71.2 100 39.0


User provided reference genes

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