Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 1.6e-214 749.2 388 100.0
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.5e-204 716.1 388 96.6
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 2.8e-203 711.8 388 94.8
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.4e-199 699.5 420 89.3
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.4e-199 698.7 388 94.3
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.1e-196 689.9 420 88.3
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.8e-195 685.3 420 87.9
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.2e-193 679.9 420 86.9
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 8.5e-184 647.1 386 84.7
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 4.6e-182 641.3 388 84.0
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 1.5e-177 626.3 388 82.0
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 3.3e-172 608.6 388 80.4
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 9.7e-172 607.1 388 80.2
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 1.8e-170 602.8 387 80.1
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 7.0e-170 600.9 388 78.4
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.3e-168 596.7 388 78.9
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 1.4e-167 593.2 388 78.9
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.9e-167 592.8 388 77.3
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 2.5e-167 592.4 386 78.8
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 5.5e-167 591.3 388 77.3
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 2.7e-166 589.0 388 78.1
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 1.4e-165 586.6 388 77.3
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 2.3e-165 585.9 388 76.0
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 6.7e-165 584.3 388 76.8
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 3.3e-164 582.0 388 75.5
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 8.2e-163 577.4 388 76.8
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 1.1e-162 577.0 388 75.5
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 3.5e-161 572.0 388 74.7
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.3e-160 570.1 388 75.0
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 8.5e-160 567.4 388 74.2
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.1e-159 567.0 389 74.0
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 9.4e-159 563.9 385 73.5
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 9.4e-159 563.9 387 74.7
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 2.1e-158 562.8 386 74.1
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 2.7e-158 562.4 377 74.5
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 1.4e-157 560.1 385 73.5
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 1.4e-157 560.1 385 73.2
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 1.8e-157 559.7 387 73.1
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 2.3e-157 559.3 388 73.5
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 2.3e-157 559.3 389 74.0
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 3.0e-157 558.9 390 74.1
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 3.0e-157 558.9 389 75.1
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 3.0e-157 558.9 406 71.4
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 3.0e-157 558.9 388 74.2
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 5.2e-157 558.1 386 73.3
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 5.2e-157 558.1 388 74.0
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 1.5e-156 556.6 383 74.2
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 1.5e-156 556.6 386 72.5
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 1.5e-156 556.6 388 75.0
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.5e-156 556.6 388 72.9
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 2.0e-156 556.2 385 72.7
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 2.0e-156 556.2 388 72.4
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 9.7e-156 553.9 386 73.3
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 2.2e-155 552.7 387 72.9
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 8.2e-155 550.8 388 74.0
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 1.8e-154 549.7 388 72.7
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 1.8e-154 549.7 388 71.6
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 2.4e-154 549.3 388 73.7
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 4.1e-154 548.5 387 72.1
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 5.3e-154 548.1 383 73.1
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 7.0e-154 547.7 388 75.0
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 9.1e-154 547.4 388 73.5
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 1.2e-153 547.0 393 73.8
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 1.6e-153 546.6 388 72.7
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 1.6e-153 546.6 388 72.7
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 2.0e-153 546.2 389 73.8
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 3.5e-153 545.4 384 73.4
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.0e-152 543.9 383 72.1
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 1.7e-152 543.1 388 72.7
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 5.0e-152 541.6 395 70.6
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 8.5e-152 540.8 388 72.4
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 3.2e-151 538.9 383 71.8
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 4.2e-151 538.5 383 72.6
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 9.4e-151 537.3 355 77.5
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 9.4e-151 537.3 389 72.5
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 6.8e-149 531.2 390 72.8
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 7.5e-148 527.7 388 70.4
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 1.7e-147 526.6 389 70.7
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 2.4e-146 522.7 385 71.2
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 3.5e-145 518.8 386 70.2
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 5.9e-145 518.1 386 70.5
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 5.9e-145 518.1 414 68.8
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 7.7e-145 517.7 385 70.1
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 2.3e-144 516.2 387 69.8
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 2.3e-144 516.2 348 75.9
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 5.0e-144 515.0 352 75.3
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 6.6e-144 514.6 385 70.6
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 4.2e-143 511.9 385 70.1
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 7.2e-143 511.1 392 68.1
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.2e-142 510.4 348 73.9
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 2.1e-142 509.6 385 69.6
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 2.8e-142 509.2 387 69.0
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 3.6e-142 508.8 387 68.7
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 4.7e-142 508.4 386 69.4
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 4.7e-142 508.4 386 69.4
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 3.0e-141 505.8 386 68.7
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 3.0e-141 505.8 388 66.2
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 5.2e-141 505.0 386 68.4
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.5e-140 503.4 341 76.5
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 1.5e-140 503.4 388 67.8
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 4.1e-138 495.4 385 68.8
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 5.4e-138 495.0 388 66.2
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 7.0e-138 494.6 386 65.0
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.6e-137 493.4 388 66.2
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 2.0e-137 493.0 385 69.1
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 3.5e-137 492.3 388 66.2
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 7.8e-137 491.1 385 68.6
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 1.2e-134 483.8 385 67.3
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 3.7e-131 472.2 337 71.2
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 4.9e-131 471.9 383 65.0
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 3.2e-130 469.2 390 65.4
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 3.9e-128 462.2 386 65.0
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 2.5e-127 459.5 401 62.1
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 8.3e-123 444.5 394 60.4
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 4.1e-122 442.2 388 60.3
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 4.1e-122 442.2 392 58.9
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 3.5e-121 439.1 397 61.2
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 7.8e-121 438.0 388 60.8
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 3.6e-118 429.1 377 59.4
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 7.5e-116 421.4 299 77.9
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 1.4e-114 417.2 399 56.9
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 4.1e-114 415.6 388 58.0
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 8.4e-107 391.3 388 56.4
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 8.1e-102 374.8 271 71.2
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 1.1e-101 374.4 295 61.7
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 5.4e-98 362.1 413 51.1
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 1.8e-88 330.5 440 44.3
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.9e-87 327.0 226 73.5
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 6.2e-86 322.0 369 48.8
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 1.3e-80 304.3 265 58.9
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 1.5e-76 290.8 386 45.1
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 3.3e-63 246.5 471 35.5
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 9.4e-58 228.4 168 71.4
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.8e-53 214.2 142 78.9
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 2.6e-52 210.3 243 47.7
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.5e-52 209.9 152 77.0
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 1.5e-50 204.5 128 85.9
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.1e-42 178.3 169 58.6
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 4.1e-37 159.8 89 93.3
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 5.0e-35 152.9 397 31.0
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 1.2e-28 131.7 149 53.7
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 1.7e-27 127.9 213 40.4
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.3e-27 127.5 79 81.0
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 2.3e-27 127.5 177 41.8
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 3.8e-27 126.7 108 60.2
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 1.6e-25 121.3 155 49.0
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 4.4e-23 113.2 138 51.4
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 9.8e-23 112.1 120 53.3
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 1.3e-19 101.7 82 63.4
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 2.5e-18 97.4 69 68.1
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 4.7e-17 93.2 127 50.4
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 6.1e-17 92.8 82 59.8
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 8.9e-16 89.0 127 48.8
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 1.3e-14 85.1 106 44.3
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 5.4e-13 79.7 125 45.6
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 1.2e-12 78.6 44 84.1
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 3.5e-12 77.0 81 50.6
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.7e-11 74.7 49 67.3
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 9.5e-10 68.9 36 97.2
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.2e-09 68.6 51 60.8
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.6e-09 68.2 100 45.0
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 1.6e-09 68.2 72 44.4
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 3.6e-09 67.0 42 78.6
Zm00001eb406200 Zea mays HOM05D004239 ORTHO05D005191 2.0e-07 61.2 77 45.5
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 2.9e-06 57.4 38 71.1


User provided reference genes

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