Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g04910 Fragaria vesca HOM05D013498 ORTHO05D035290 1.7e-57 225.7 107 100.0
FAN09G1761 Fragaria x ananassa HOM05D013498 ORTHO05D035290 1.2e-42 176.4 136 69.1
FvH4_6g04900 Fragaria vesca HOM05D013498 ORTHO05D035290 6.7e-22 107.5 117 55.6
FAN05G0793 Fragaria x ananassa HOM05D047740 ORTHO05D207479 2.3e-14 82.4 44 81.8
FvH4_6g05980 Fragaria vesca HOM05D013498 ORTHO05D035377 5.1e-14 81.3 116 45.7
FAN14G2574 Fragaria x ananassa HOM05D005874 ORTHO05D007206 2.5e-13 79.0 35 100.0
FAN05G3108 Fragaria x ananassa HOM05D013498 ORTHO05D210002 7.4e-13 77.4 94 52.1
FAN05G3291 Fragaria x ananassa HOM05D013498 ORTHO05D207618 7.4e-13 77.4 94 52.1
FAN14G5890 Fragaria x ananassa HOM05D013498 ORTHO05D035377 1.3e-12 76.6 81 54.3
FAN20G1139 Fragaria x ananassa HOM05D000597 ORTHO05D006307 8.2e-12 73.9 71 60.6
RcHm_v2.0_Chr6g0311781 Rosa chinensis HOM05D000597 ORTHO05D006307 8.2e-12 73.9 71 59.2
FAN14G1036 Fragaria x ananassa HOM05D013498 ORTHO05D035377 1.4e-11 73.2 81 53.1
FAN27G3506 Fragaria x ananassa HOM05D000597 ORTHO05D006307 1.8e-11 72.8 71 59.2
FvH4_2g30990 Fragaria vesca HOM05D000597 ORTHO05D006307 2.4e-11 72.4 69 58.0
MD15G1050100 Malus domestica HOM05D000597 ORTHO05D006307 9.0e-11 70.5 75 50.7
FAN16G2205 Fragaria x ananassa HOM05D000597 ORTHO05D006307 2.6e-10 68.9 68 54.4
FAN14G3688 Fragaria x ananassa HOM05D013498 ORTHO05D035239 3.4e-10 68.6 93 49.5
FAN21G1915 Fragaria x ananassa HOM05D000597 ORTHO05D006307 3.4e-10 68.6 68 54.4
FAN25G2088 Fragaria x ananassa HOM05D000597 ORTHO05D006307 3.4e-10 68.6 68 54.4
BNapus_Darmor_BZH_scaffold_38p01010 Brassica napus HOM05D000597 ORTHO05D006307 1.3e-09 66.6 74 51.4
BraA02t05627Z Brassica rapa HOM05D000597 ORTHO05D006307 1.3e-09 66.6 74 51.4
BcaB08g36471 Brassica carinata HOM05D000597 ORTHO05D006307 1.7e-09 66.2 74 51.4
BcaC03g13842 Brassica carinata HOM05D000597 ORTHO05D006307 1.7e-09 66.2 74 51.4
BolC2t07118H Brassica oleracea HOM05D000597 ORTHO05D006307 1.7e-09 66.2 74 51.4
FAN14G4835 Fragaria x ananassa HOM05D013498 ORTHO05D035239 1.7e-09 66.2 93 48.4
MD08G1071200 Malus domestica HOM05D000597 ORTHO05D006307 1.7e-09 66.2 75 49.3
Lsat_1_v5_gn_7_58561 Lactuca sativa HOM05D000597 ORTHO05D006307 2.2e-09 65.9 74 50.0
Carub.0006s1953 Capsella rubella HOM05D000597 ORTHO05D006307 2.9e-09 65.5 74 48.6
Prupe.1G404300 Prunus persica HOM05D000597 ORTHO05D006307 2.9e-09 65.5 74 45.9
AL6G32860 Arabidopsis lyrata HOM05D000597 ORTHO05D006307 4.9e-09 64.7 74 50.0
AT5G21482 Arabidopsis thaliana HOM05D000597 ORTHO05D006307 4.9e-09 64.7 74 50.0
FvH4_6g05970 Fragaria vesca HOM05D013498 ORTHO05D035239 4.9e-09 64.7 93 47.3
SalBow4G0819 Salvia bowleyana HOM05D000597 ORTHO05D006307 4.9e-09 64.7 73 53.4
BcaC04g19509 Brassica carinata HOM05D000597 ORTHO05D006307 6.5e-09 64.3 74 50.0
A10p18830 Brassica napus HOM05D000597 ORTHO05D006307 6.5e-09 64.3 74 50.0
C09p54840 Brassica napus HOM05D000597 ORTHO05D006307 6.5e-09 64.3 74 50.0
BolC9t58344H Brassica oleracea HOM05D000597 ORTHO05D006307 6.5e-09 64.3 74 50.0
BraA10t43962Z Brassica rapa HOM05D000597 ORTHO05D006307 6.5e-09 64.3 74 50.0
CARHR191650 Cardamine hirsuta HOM05D000597 ORTHO05D006307 6.5e-09 64.3 74 47.3
Cc08_g01180 Coffea canephora HOM05D000597 ORTHO05D006307 6.5e-09 64.3 74 44.6
FvH4_3g04610 Fragaria vesca HOM05D000597 ORTHO05D006307 8.4e-09 63.9 68 51.5
FAN11G0726 Fragaria x ananassa HOM05D000597 ORTHO05D006307 8.4e-09 63.9 68 51.5
Sp6g23300 Schrenkiella parvula HOM05D000597 ORTHO05D006307 8.4e-09 63.9 74 50.0
SGA_v2.0_scaffold20G09166 Striga asiatica HOM05D000597 ORTHO05D006307 8.4e-09 63.9 74 51.4
Lj7C223T2 Lonicera japonica HOM05D000597 ORTHO05D006307 1.1e-08 63.5 74 48.6
Lj5g0020207 Lotus japonicus HOM05D000597 ORTHO05D006307 1.1e-08 63.5 74 45.9
BcaB05g22764 Brassica carinata HOM05D000597 ORTHO05D006307 1.4e-08 63.2 74 48.6
ClCG05G015730 Citrullus lanatus HOM05D000597 ORTHO05D006307 1.9e-08 62.8 74 48.6
ECA240G2523 Erigeron canadensis HOM05D000597 ORTHO05D006307 3.2e-08 62.0 74 47.3
Thhalv10013259m.g Eutrema salsugineum HOM05D000597 ORTHO05D006307 3.2e-08 62.0 74 48.6
Hund03298 Selenicereus undatus HOM05D000597 ORTHO05D006307 3.2e-08 62.0 74 47.3
GSVIVG01035468001 Vitis vinifera HOM05D000597 ORTHO05D006307 3.2e-08 62.0 90 41.1
Eucgr.C03157 Eucalyptus grandis HOM05D000597 ORTHO05D006307 5.5e-08 61.2 81 44.4
Gohir.D08G268600 Gossypium hirsutum HOM05D000597 ORTHO05D006307 5.5e-08 61.2 74 45.9
Gorai.004G286300 Gossypium raimondii HOM05D000597 ORTHO05D006307 5.5e-08 61.2 74 45.9
Atru.chr7.1849 Acer truncatum HOM05D000597 ORTHO05D006307 7.1e-08 60.8 75 46.7
CiPaw.15G092000 Carya illinoinensis HOM05D000597 ORTHO05D006307 7.1e-08 60.8 74 45.9
CDE06G0608 Ceratophyllum demersum HOM05D000597 ORTHO05D006307 7.1e-08 60.8 74 50.0
MELO3C016911.2 Cucumis melo HOM05D000597 ORTHO05D006307 7.1e-08 60.8 83 44.6
Gohir.A08G247400 Gossypium hirsutum HOM05D000597 ORTHO05D006307 7.1e-08 60.8 74 45.9
THA.LOC104810957 Tarenaya hassleriana HOM05D000597 ORTHO05D006307 7.1e-08 60.8 74 47.3
Aa31LG1G13510 Aethionema arabicum HOM05D000597 ORTHO05D006307 9.3e-08 60.5 74 45.9
CDE07G0911 Ceratophyllum demersum HOM05D000597 ORTHO05D006307 9.3e-08 60.5 74 50.0
DCAR_004381 Daucus carota HOM05D000597 ORTHO05D006307 9.3e-08 60.5 74 44.6
Migut.A00080 Erythranthe guttata HOM05D000597 ORTHO05D006307 9.3e-08 60.5 74 48.6
CsaV3_4G036030 Cucumis sativus L. HOM05D000597 ORTHO05D006307 1.2e-07 60.1 74 47.3
PSO386G0136 Papaver somniferum HOM05D000597 ORTHO05D006307 1.2e-07 60.1 74 47.3
QL02p016975 Quercus lobata HOM05D000597 ORTHO05D006307 1.2e-07 60.1 68 48.5
Sed0013093 Sechium edule HOM05D000597 ORTHO05D006307 1.2e-07 60.1 74 47.3
CAN.G6.10 Capsicum annuum HOM05D000597 ORTHO05D006307 1.6e-07 59.7 87 44.8
Duzib168G1163 Durio zibethinus HOM05D000597 ORTHO05D006307 1.6e-07 59.7 81 44.4
HanXRQChr03g0066891 Helianthus annuus HOM05D000597 ORTHO05D006307 1.6e-07 59.7 65 50.8
Manes.16G085500 Manihot esculenta HOM05D000597 ORTHO05D006307 1.6e-07 59.7 74 45.9
Sed0018261 Sechium edule HOM05D000597 ORTHO05D006307 1.6e-07 59.7 87 47.1
Gohir.A05G038800 Gossypium hirsutum HOM05D000597 ORTHO05D006307 2.1e-07 59.3 65 50.8
Gohir.D05G040300 Gossypium hirsutum HOM05D000597 ORTHO05D006307 2.1e-07 59.3 65 50.8
Gorai.009G040700 Gossypium raimondii HOM05D000597 ORTHO05D006307 2.1e-07 59.3 65 50.8
Cpa.g.sc126.29 Carica papaya HOM05D000597 ORTHO05D006307 2.7e-07 58.9 74 43.2
DCAR_001220 Daucus carota HOM05D000597 ORTHO05D006307 2.7e-07 58.9 74 41.9
Gohir.D13G194900 Gossypium hirsutum HOM05D000597 ORTHO05D006307 2.7e-07 58.9 68 47.1
PGR102G2775 Punica granatum HOM05D000597 ORTHO05D006307 2.7e-07 58.9 68 47.1
Ciclev10007999m.g Citrus clementina HOM05D000597 ORTHO05D006307 3.5e-07 58.5 74 44.6
Haze_18292 Corylus avellana HOM05D000597 ORTHO05D006307 3.5e-07 58.5 74 43.2
Glyma.17G225700 Glycine max HOM05D000597 ORTHO05D006307 3.5e-07 58.5 81 45.7
Potri.006G221000 Populus trichocarpa HOM05D000597 ORTHO05D006307 3.5e-07 58.5 81 44.4
EL10Ac2g03785 Beta vulgaris HOM05D000597 ORTHO05D006307 4.6e-07 58.2 74 44.6
CANSAT80G1758 Cannabis sativa HOM05D000597 ORTHO05D000603 4.6e-07 58.2 74 40.5
Dinv04363 Davidia involucrata HOM05D000597 ORTHO05D006307 4.6e-07 58.2 74 44.6
Hund19423 Selenicereus undatus HOM05D000597 ORTHO05D006307 4.6e-07 58.2 65 49.2
PGSC0003DMG400031420 Solanum tuberosum HOM05D000597 ORTHO05D006307 4.6e-07 58.2 74 43.2
Duzib150G1446 Durio zibethinus HOM05D000597 ORTHO05D006307 6.0e-07 57.8 74 41.9
Thecc.09G063200 Theobroma cacao HOM05D000597 ORTHO05D006307 6.0e-07 57.8 68 47.1
BcaB01g03464 Brassica carinata HOM05D000597 ORTHO05D000603 7.9e-07 57.4 74 41.9
CANSAT25G3768 Cannabis sativa HOM05D000597 ORTHO05D006307 7.9e-07 57.4 68 47.1
Gohir.A13G188000 Gossypium hirsutum HOM05D000597 ORTHO05D006307 7.9e-07 57.4 65 47.7
Nitab4.5_0000341g0010 Nicotiana tabacum HOM05D000597 ORTHO05D006307 7.9e-07 57.4 67 49.3
Nitab4.5_0000446g0210 Nicotiana tabacum HOM05D000597 ORTHO05D006307 7.9e-07 57.4 67 49.3
Sabra06G0170800 Salix brachista HOM05D000597 ORTHO05D006307 7.9e-07 57.4 74 43.2
CSS0003687 Camellia sinensis var. sinensis HOM05D000597 ORTHO05D006307 1.0e-06 57.0 74 45.9
CAN.G567.3 Capsicum annuum HOM05D000597 ORTHO05D006307 1.0e-06 57.0 67 47.8
Peaxi162Scf00101g01910 Petunia axillaris HOM05D000597 ORTHO05D006307 1.0e-06 57.0 74 43.2
Duzib187G1275 Durio zibethinus HOM05D000597 ORTHO05D006307 1.3e-06 56.6 65 47.7
Gohir.A06G081700 Gossypium hirsutum HOM05D000597 ORTHO05D006307 1.3e-06 56.6 74 43.2
Gohir.D06G083200 Gossypium hirsutum HOM05D000597 ORTHO05D006307 1.3e-06 56.6 74 43.2
Gorai.010G096700 Gossypium raimondii HOM05D000597 ORTHO05D006307 1.3e-06 56.6 74 43.2
PGR044G2525 Punica granatum HOM05D000597 ORTHO05D006307 1.3e-06 56.6 73 47.9
Sc09g0010100 Simmondsia chinensis HOM05D000597 ORTHO05D006307 1.3e-06 56.6 75 41.3
THA.LOC104799579 Tarenaya hassleriana HOM05D000597 ORTHO05D006307 1.3e-06 56.6 74 43.2
CAN.G726.14 Capsicum annuum HOM05D000597 ORTHO05D006307 2.3e-06 55.8 67 47.8
Lsat_1_v5_gn_5_142820 Lactuca sativa HOM05D000597 ORTHO05D000603 2.3e-06 55.8 89 37.1
PSO210G5112 Papaver somniferum HOM05D000597 ORTHO05D006307 2.3e-06 55.8 74 44.6
Sopen08g017330 Solanum pennellii HOM05D000597 ORTHO05D006307 2.3e-06 55.8 67 46.3
Gohir.D10G254400 Gossypium hirsutum HOM05D000597 ORTHO05D000603 3.0e-06 55.5 74 40.5
Gorai.011G295400 Gossypium raimondii HOM05D000597 ORTHO05D000603 3.0e-06 55.5 74 40.5
Nn8g38686 Nelumbo nucifera HOM05D000597 ORTHO05D006307 3.0e-06 55.5 75 42.7
Nn8g38688 Nelumbo nucifera HOM05D000597 ORTHO05D006307 3.0e-06 55.5 75 42.7
TPR.G38831 Trifolium pratense HOM05D000597 ORTHO05D006307 3.0e-06 55.5 74 41.9
Psat6g022720 Pisum sativum HOM05D000597 ORTHO05D006307 3.9e-06 55.1 81 42.0
arahy.Tifrunner.gnm1.ann1.1E8W48 Arachis hypogaea HOM05D000597 ORTHO05D006307 5.1e-06 54.7 74 41.9
arahy.Tifrunner.gnm1.ann1.7YV5MC Arachis hypogaea HOM05D000597 ORTHO05D006307 5.1e-06 54.7 74 41.9
AUR62009081 Chenopodium quinoa HOM05D000597 ORTHO05D006307 5.1e-06 54.7 63 49.2
Ca_13108_v3 Cicer arietinum L. HOM05D000597 ORTHO05D006307 5.1e-06 54.7 65 47.7
Glyma.14G099000 Glycine max HOM05D000597 ORTHO05D006307 5.1e-06 54.7 68 45.6
Gorai.013G221000 Gossypium raimondii HOM05D000597 ORTHO05D006307 5.1e-06 54.7 68 44.1
Manes.03G052900 Manihot esculenta HOM05D000597 ORTHO05D006307 5.1e-06 54.7 74 41.9
Ah.10g033940 Amaranthus hybridus HOM05D000597 ORTHO05D006307 6.7e-06 54.3 74 43.2
MBI13_g11332_MAGBIO Magnolia biondii HOM05D000597 ORTHO05D006307 6.7e-06 54.3 74 41.9
Sopen08g017300 Solanum pennellii HOM05D000597 ORTHO05D006307 6.7e-06 54.3 67 44.8
TWI34G0313 Tripterygium wilfordii HOM05D000597 ORTHO05D006307 6.7e-06 54.3 74 41.9
BcaC01g05331 Brassica carinata HOM05D000597 ORTHO05D000603 8.7e-06 53.9 74 39.2
A03p23300 Brassica napus HOM05D000597 ORTHO05D000603 8.7e-06 53.9 74 39.2
C03p27820 Brassica napus HOM05D000597 ORTHO05D000603 8.7e-06 53.9 74 39.2
COL.COLO4_21137 Corchorus olitorius HOM05D000597 ORTHO05D006307 8.7e-06 53.9 68 42.6
TAR626G0373 Trochodendron aralioides HOM05D000597 ORTHO05D006307 8.7e-06 53.9 74 40.5
TAR626G1574 Trochodendron aralioides HOM05D000597 ORTHO05D006307 8.7e-06 53.9 74 40.5


User provided reference genes

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