Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 4.5e-46 187.6 95 100.0
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 1.2e-19 99.8 172 44.2
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.2e-19 99.8 172 44.2
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.2e-19 99.8 172 44.2
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.2e-19 99.8 172 44.2
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.2e-19 99.8 172 44.2
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.2e-19 99.8 172 44.2
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 2.7e-19 98.6 172 44.2
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 8.0e-19 97.1 172 43.6
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 5.7e-17 90.9 172 41.3
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 1.7e-16 89.4 172 40.7
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 2.8e-16 88.6 91 57.1
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 1.4e-15 86.3 158 41.8
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 4.1e-15 84.7 172 40.1
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 4.1e-15 84.7 172 40.1
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 4.1e-15 84.7 172 39.0
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 5.4e-15 84.3 172 39.0
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 7.0e-15 84.0 172 39.0
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 7.0e-15 84.0 172 39.0
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 7.0e-15 84.0 172 39.5
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.2e-14 83.2 172 39.5
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 2.0e-14 82.4 174 38.5
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 3.5e-14 81.6 172 37.8
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 3.5e-14 81.6 172 38.4
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 4.5e-14 81.3 172 37.8
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 1.0e-13 80.1 172 38.4
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 3.8e-13 78.2 172 37.2
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 3.8e-13 78.2 171 37.4
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 5.0e-13 77.8 88 52.3
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 6.5e-13 77.4 172 37.8
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 6.5e-13 77.4 172 36.6
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 1.9e-12 75.9 172 36.0
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 1.9e-12 75.9 91 50.5
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 2.5e-12 75.5 172 37.8
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 3.2e-12 75.1 172 35.5
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 5.5e-12 74.3 88 50.0
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 5.5e-12 74.3 88 50.0
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 7.2e-12 73.9 172 36.6
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 7.2e-12 73.9 88 50.0
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 7.2e-12 73.9 88 51.1
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 7.2e-12 73.9 88 51.1
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 7.2e-12 73.9 88 51.1
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 9.5e-12 73.6 91 47.3
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 1.2e-11 73.2 88 50.0
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 1.6e-11 72.8 88 50.0
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 1.6e-11 72.8 88 48.9
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 1.6e-11 72.8 88 48.9
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 1.6e-11 72.8 88 50.0
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 2.8e-11 72.0 172 35.5
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 3.6e-11 71.6 88 48.9
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 4.7e-11 71.2 82 50.0
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 4.7e-11 71.2 82 50.0
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 4.7e-11 71.2 82 50.0
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 8.0e-11 70.5 37 86.5
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 1.4e-10 69.7 88 46.6
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 1.4e-10 69.7 88 45.5
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 1.8e-10 69.3 88 46.6
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 2.3e-10 68.9 172 34.3
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 2.3e-10 68.9 88 47.7
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 3.0e-10 68.6 88 47.7
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 3.0e-10 68.6 88 46.6
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 3.0e-10 68.6 88 47.7
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 4.0e-10 68.2 88 46.6
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 5.2e-10 67.8 88 46.6
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 6.8e-10 67.4 88 46.6
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 6.8e-10 67.4 37 83.8
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 6.8e-10 67.4 37 83.8
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 6.8e-10 67.4 37 83.8
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 8.8e-10 67.0 88 45.5
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 1.2e-09 66.6 88 45.5
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 1.2e-09 66.6 88 43.2
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 1.2e-09 66.6 88 45.5
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 1.5e-09 66.2 88 45.5
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 1.5e-09 66.2 88 45.5
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 1.5e-09 66.2 88 44.3
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 2.0e-09 65.9 88 44.3
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 2.0e-09 65.9 88 44.3
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 2.0e-09 65.9 88 44.3
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 2.0e-09 65.9 88 44.3
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 2.0e-09 65.9 88 44.3
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 2.0e-09 65.9 88 43.2
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 2.6e-09 65.5 88 45.5
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 2.6e-09 65.5 88 45.5
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 2.6e-09 65.5 87 43.7
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 2.6e-09 65.5 86 46.5
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 5.7e-09 64.3 88 44.3
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 5.7e-09 64.3 88 44.3
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 7.5e-09 63.9 88 43.2
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 9.8e-09 63.5 45 68.9
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 9.8e-09 63.5 88 45.5
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 9.8e-09 63.5 88 45.5
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 9.8e-09 63.5 36 80.6
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 1.3e-08 63.2 88 45.5
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.3e-08 63.2 37 81.1
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 2.2e-08 62.4 86 43.0
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 3.7e-08 61.6 37 73.0
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 6.3e-08 60.8 86 43.0
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 8.3e-08 60.5 88 43.2
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 1.1e-07 60.1 88 43.2
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 1.4e-07 59.7 44 68.2
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 1.4e-07 59.7 85 43.5
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 1.8e-07 59.3 39 74.4
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 1.8e-07 59.3 39 74.4
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 2.4e-07 58.9 88 42.0
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 4.1e-07 58.2 85 41.2
CAN.G71.10 Capsicum annuum HOM05D001871 ORTHO05D002022 5.4e-07 57.8 35 77.1
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 1.6e-06 56.2 88 40.9
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 2.0e-06 55.8 77 44.2
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 4.5e-06 54.7 88 40.9
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 7.8e-06 53.9 171 29.2


User provided reference genes

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