Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 1.1e-190 669.8 335 100.0
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.3e-188 662.9 335 98.5
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.1e-186 655.6 335 95.8
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.6e-181 638.6 335 95.5
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.6e-181 638.6 335 95.5
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 7.6e-181 637.1 335 94.9
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 1.1e-158 563.5 298 91.6
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 1.8e-158 562.8 337 83.1
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 2.1e-154 549.3 344 80.2
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 3.0e-145 518.8 307 82.1
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 8.2e-143 510.8 335 75.2
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 1.4e-142 510.0 334 74.3
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 4.1e-142 508.4 345 73.0
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 5.3e-142 508.1 334 73.7
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 9.0e-142 507.3 344 73.0
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 1.5e-141 506.5 343 74.1
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 2.6e-141 505.8 336 74.1
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 4.5e-141 505.0 348 72.1
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 2.2e-140 502.7 347 72.6
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 6.5e-140 501.1 331 74.3
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 1.1e-139 500.4 333 71.8
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 9.3e-139 497.3 329 72.9
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 9.3e-139 497.3 338 71.9
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 1.6e-138 496.5 340 71.8
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 1.0e-137 493.8 333 72.7
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 1.3e-137 493.4 338 71.9
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 1.3e-137 493.4 329 73.6
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 1.8e-137 493.0 337 72.7
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 2.3e-137 492.7 336 72.3
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 3.0e-137 492.3 328 75.0
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 3.9e-137 491.9 337 73.3
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 6.7e-137 491.1 330 73.3
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 2.5e-136 489.2 348 70.7
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 3.3e-136 488.8 328 73.8
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 3.3e-136 488.8 328 73.5
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 4.3e-136 488.4 332 72.9
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 5.7e-136 488.0 338 74.0
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 7.4e-136 487.6 273 83.2
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 9.7e-136 487.3 267 82.8
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 2.8e-135 485.7 273 83.2
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 4.8e-135 485.0 338 73.4
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 4.8e-135 485.0 267 83.1
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 4.8e-135 485.0 340 72.6
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 6.3e-135 484.6 330 73.3
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 8.2e-135 484.2 333 71.5
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 8.2e-135 484.2 307 76.9
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 1.4e-134 483.4 338 69.2
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 3.1e-134 482.3 329 72.0
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 5.3e-134 481.5 330 71.5
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 5.3e-134 481.5 337 71.8
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 6.9e-134 481.1 335 72.2
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 1.2e-133 480.3 333 70.9
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 1.2e-133 480.3 333 70.9
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 1.5e-133 479.9 333 70.9
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 2.0e-133 479.6 331 71.0
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 2.0e-133 479.6 266 84.6
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 2.6e-133 479.2 277 80.9
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 3.4e-133 478.8 268 83.6
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 3.4e-133 478.8 339 69.9
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 4.5e-133 478.4 333 73.3
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 4.5e-133 478.4 336 69.9
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 5.9e-133 478.0 331 70.1
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 7.7e-133 477.6 329 70.8
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 1.0e-132 477.2 334 69.8
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 1.0e-132 477.2 333 73.3
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 2.2e-132 476.1 329 70.2
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 2.9e-132 475.7 331 70.7
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 3.8e-132 475.3 334 69.5
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 5.0e-132 474.9 328 69.8
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 8.5e-132 474.2 340 70.3
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 1.1e-131 473.8 329 70.8
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 1.1e-131 473.8 331 71.6
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 1.4e-131 473.4 337 71.8
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.9e-131 473.0 275 80.0
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.5e-131 472.6 265 82.3
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 4.2e-131 471.9 334 69.8
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 7.2e-131 471.1 329 70.2
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 7.2e-131 471.1 275 80.0
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 1.6e-130 469.9 265 81.1
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 3.6e-130 468.8 270 81.1
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 4.6e-130 468.4 335 68.4
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 6.1e-130 468.0 327 70.0
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 6.1e-130 468.0 270 81.1
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 7.9e-130 467.6 327 70.0
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 7.9e-130 467.6 270 80.7
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 7.9e-130 467.6 299 74.9
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 1.4e-129 466.8 334 69.5
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 1.8e-129 466.5 327 69.7
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.8e-129 466.5 330 69.1
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 3.0e-129 465.7 338 67.8
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 3.0e-129 465.7 334 69.2
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 3.0e-129 465.7 340 68.2
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 3.9e-129 465.3 327 69.4
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 6.7e-129 464.5 327 70.0
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 6.7e-129 464.5 327 70.0
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 6.7e-129 464.5 265 81.1
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 6.7e-129 464.5 331 69.8
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 6.7e-129 464.5 335 70.1
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 8.8e-129 464.2 329 71.7
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 1.1e-128 463.8 327 69.4
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 1.5e-128 463.4 273 78.4
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.5e-128 463.4 315 71.1
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 4.4e-128 461.8 347 66.9
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 5.7e-128 461.5 339 67.3
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 7.4e-128 461.1 338 67.5
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 8.2e-127 457.6 328 69.8
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 8.2e-127 457.6 337 70.3
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 1.1e-126 457.2 322 70.5
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 1.4e-126 456.8 331 68.6
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 3.4e-125 452.2 242 86.0
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 5.0e-124 448.4 264 78.8
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 1.9e-123 446.4 264 79.2
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 3.6e-122 442.2 242 83.9
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 1.4e-121 440.3 266 78.2
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 2.6e-120 436.0 233 86.7
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 1.4e-118 430.3 339 62.2
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 7.7e-117 424.5 342 63.2
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 1.9e-115 419.9 263 75.7
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 5.2e-113 411.8 247 80.2
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 1.5e-112 410.2 270 71.9
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 2.6e-112 409.5 268 72.8
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 7.5e-112 407.9 217 83.9
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 9.7e-112 407.5 214 86.4
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 1.8e-110 403.3 221 82.8
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 1.3e-108 397.1 228 80.3
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.7e-108 396.7 345 59.7
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 9.4e-107 391.0 215 81.4
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 9.4e-107 391.0 267 69.3
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 2.1e-106 389.8 221 80.1
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 6.1e-106 388.3 335 58.8
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 2.9e-100 369.4 208 81.2
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 6.1e-98 361.7 218 73.9
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 1.8e-97 360.1 265 64.5
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 4.9e-95 352.1 300 63.0
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 1.3e-92 344.0 271 62.4
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 2.8e-82 309.7 250 62.8
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 3.7e-79 299.3 233 60.9
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 3.9e-76 289.3 152 86.2
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 3.3e-75 286.2 154 84.4
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 4.7e-74 282.3 210 69.0
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 3.4e-72 276.2 197 68.0
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 1.7e-71 273.9 218 64.2
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 3.5e-69 266.2 165 75.8
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.7e-68 263.8 211 65.9
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 7.3e-67 258.5 217 59.4
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 5.8e-56 222.2 129 77.5
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 6.0e-53 212.2 147 69.4
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 1.9e-38 164.1 171 53.2
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 4.3e-19 99.8 88 56.8
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 4.8e-18 96.3 111 54.1
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 1.9e-14 84.3 113 46.0
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 6.1e-13 79.3 128 40.6
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 3.9e-12 76.6 49 67.3


User provided reference genes

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