Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g03900 Fragaria vesca HOM05D000519 ORTHO05D017946 7.4e-62 240.4 121 100.0
Prupe.6G335700 Prunus persica HOM05D017371 ORTHO05D017946 8.0e-24 114.0 118 52.5
FAN09G0620 Fragaria x ananassa HOM05D000519 ORTHO05D017946 1.5e-22 109.8 98 56.1
MD04G1217400 Malus domestica HOM05D000519 ORTHO05D017946 2.9e-21 105.5 110 50.0
RcHm_v2.0_Chr3g0452681 Rosa chinensis HOM05D000519 ORTHO05D000959 1.1e-17 93.6 112 44.6
FvH4_6g08240 Fragaria vesca HOM05D017371 ORTHO05D017946 2.1e-16 89.4 120 42.5
FAN14G4562 Fragaria x ananassa HOM05D017371 ORTHO05D017946 2.1e-16 89.4 120 42.5
MD10G1333500 Malus domestica HOM05D000519 ORTHO05D000959 1.4e-15 86.7 123 43.9
FvH4_3g34980 Fragaria vesca HOM05D017371 ORTHO05D017946 2.3e-15 85.9 106 45.3
MD05G1358900 Malus domestica HOM05D000519 ORTHO05D000959 3.1e-15 85.5 126 42.1
MD12G1232100 Malus domestica HOM05D000519 ORTHO05D017946 3.1e-15 85.5 115 45.2
FAN06G3217 Fragaria x ananassa HOM05D000519 ORTHO05D000959 1.3e-13 80.1 96 50.0
Prupe.4G008900 Prunus persica HOM05D000519 ORTHO05D000959 1.7e-13 79.7 132 40.2
RcHm_v2.0_Chr2g0140821 Rosa chinensis HOM05D000519 ORTHO05D000959 1.1e-12 77.0 107 41.1
RcHm_v2.0_Chr5g0010601 Rosa chinensis HOM05D000519 ORTHO05D019175 1.1e-12 77.0 123 44.7
FAN05G3419 Fragaria x ananassa HOM05D010898 ORTHO05D015117 1.9e-12 76.3 106 37.7
MD03G1148300 Malus domestica HOM05D000519 ORTHO05D000959 2.4e-12 75.9 120 40.8
Prupe.6G335600 Prunus persica HOM05D017371 ORTHO05D017946 5.4e-12 74.7 80 51.2
RcHm_v2.0_Chr5g0010541 Rosa chinensis HOM05D000519 ORTHO05D019175 7.1e-12 74.3 121 41.3
RcHm_v2.0_Chr1g0361291 Rosa chinensis HOM05D000519 ORTHO05D000959 1.2e-11 73.6 120 38.3
FvH4_4g30070 Fragaria vesca HOM05D000519 ORTHO05D019175 2.1e-11 72.8 124 41.9
RcHm_v2.0_Chr3g0455001 Rosa chinensis HOM05D000519 ORTHO05D000959 2.7e-11 72.4 113 39.8
FAN12G0917 Fragaria x ananassa HOM05D000519 ORTHO05D019175 7.8e-11 70.9 140 35.7
Prupe.4G009100 Prunus persica HOM05D000519 ORTHO05D000959 7.8e-11 70.9 126 36.5
FAN12G3560 Fragaria x ananassa HOM05D000519 ORTHO05D019175 1.0e-10 70.5 142 35.2
MD05G1359300 Malus domestica HOM05D000519 ORTHO05D000959 1.3e-10 70.1 123 37.4
FAN05G4870 Fragaria x ananassa HOM05D000519 ORTHO05D000959 1.7e-10 69.7 77 48.1
MD05G1358700 Malus domestica HOM05D000519 ORTHO05D000959 1.7e-10 69.7 132 37.1
FvH4_3g00830 Fragaria vesca HOM05D000519 ORTHO05D000959 2.3e-10 69.3 116 37.1
Haze_09252 Corylus avellana HOM05D000519 ORTHO05D000959 3.9e-10 68.6 100 39.0
AT5G47550 Arabidopsis thaliana HOM05D000519 ORTHO05D000959 5.1e-10 68.2 93 45.2
Prupe.6G215700 Prunus persica HOM05D000519 ORTHO05D000959 5.1e-10 68.2 117 37.6
FAN02G0204 Fragaria x ananassa HOM05D000519 ORTHO05D000959 6.6e-10 67.8 113 39.8
FAN12G3268 Fragaria x ananassa HOM05D000519 ORTHO05D019175 8.6e-10 67.4 90 43.3
FAN21G0953 Fragaria x ananassa HOM05D000919 ORTHO05D001187 1.1e-09 67.0 85 43.5
FAN07G2456 Fragaria x ananassa HOM05D000519 ORTHO05D019175 1.9e-09 66.2 90 42.2
TAR629G0911 Trochodendron aralioides HOM05D000519 ORTHO05D000959 3.3e-09 65.5 115 38.3
AL8G10420 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 5.6e-09 64.7 94 41.5
Carub.0004s1417 Capsella rubella HOM05D000519 ORTHO05D000959 5.6e-09 64.7 95 42.1
Cfa019521 Carpinus fangiana HOM05D000519 ORTHO05D000959 7.3e-09 64.3 100 39.0
Peaxi162Scf00924g00034 Petunia axillaris HOM05D000519 ORTHO05D000959 7.3e-09 64.3 98 40.8
Ca_00730_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 9.5e-09 63.9 112 39.3
Peaxi162Scf00924g00023 Petunia axillaris HOM05D000519 ORTHO05D000959 9.5e-09 63.9 98 40.8
Peaxi162Scf00924g00031 Petunia axillaris HOM05D000519 ORTHO05D000959 9.5e-09 63.9 98 40.8
Nitab4.5_0001109g0080 Nicotiana tabacum HOM05D000519 ORTHO05D000959 1.2e-08 63.5 97 42.3
FvH4_4g30060 Fragaria vesca HOM05D000519 ORTHO05D019175 1.6e-08 63.2 133 35.3
Peaxi162Scf00924g00035 Petunia axillaris HOM05D000519 ORTHO05D000959 1.6e-08 63.2 98 40.8
RcHm_v2.0_Chr5g0001051 Rosa chinensis HOM05D000519 ORTHO05D000959 1.6e-08 63.2 118 38.1
BcaNung00185 Brassica carinata HOM05D000519 ORTHO05D000959 2.1e-08 62.8 99 38.4
CiPaw.09G103500 Carya illinoinensis HOM05D000519 ORTHO05D000959 2.1e-08 62.8 93 41.9
Gohir.A06G153800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 2.8e-08 62.4 99 40.4
Peaxi162Scf00924g00032 Petunia axillaris HOM05D000519 ORTHO05D000959 2.8e-08 62.4 98 40.8
QL05p069227 Quercus lobata HOM05D000519 ORTHO05D000959 2.8e-08 62.4 111 36.9
Sopen04g006920 Solanum pennellii HOM05D000519 ORTHO05D000959 2.8e-08 62.4 94 38.3
BcaNung00187 Brassica carinata HOM05D000519 ORTHO05D000959 3.6e-08 62.0 99 38.4
Medtr2g026040 Medicago truncatula HOM05D000519 ORTHO05D000959 3.6e-08 62.0 74 45.9
VMungo1215G1198 Vigna mungo HOM05D000519 ORTHO05D000959 3.6e-08 62.0 97 40.2
BcaC06g31374 Brassica carinata HOM05D000519 ORTHO05D000959 6.2e-08 61.2 97 39.2
Cfa000088 Carpinus fangiana HOM05D000519 ORTHO05D000959 6.2e-08 61.2 100 37.0
BcaB07g30771 Brassica carinata HOM05D000519 ORTHO05D000959 8.1e-08 60.8 76 47.4
Medtr4g133540 Medicago truncatula HOM05D000519 ORTHO05D000959 8.1e-08 60.8 104 38.5
Nitab4.5_0004646g0100 Nicotiana tabacum HOM05D000519 ORTHO05D000959 8.1e-08 60.8 97 38.1
SalBow8G3278 Salvia bowleyana HOM05D000519 ORTHO05D000959 8.1e-08 60.8 99 39.4
Solyc04g014790.1 Solanum lycopersicum HOM05D000519 ORTHO05D000959 8.1e-08 60.8 94 37.2
Peaxi162Scf00924g00021 Petunia axillaris HOM05D000519 ORTHO05D000959 1.1e-07 60.5 62 51.6
Ca_21040_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 1.4e-07 60.1 94 39.4
Thhalv10017424m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 1.4e-07 60.1 79 46.8
Phvul.003G084300 Phaseolus vulgaris HOM05D000519 ORTHO05D000959 1.4e-07 60.1 97 39.2
CARHR173800 Cardamine hirsuta HOM05D000519 ORTHO05D000959 1.8e-07 59.7 95 38.9
Cpa.g.sc75.103 Carica papaya HOM05D000519 ORTHO05D000959 1.8e-07 59.7 115 37.4
Gorai.010G187300 Gossypium raimondii HOM05D000519 ORTHO05D000959 1.8e-07 59.7 99 39.4
A09p23090 Brassica napus HOM05D000519 ORTHO05D000959 2.3e-07 59.3 76 46.1
BraA09t37913Z Brassica rapa HOM05D000519 ORTHO05D000959 2.3e-07 59.3 76 46.1
MD05G1359200 Malus domestica HOM05D000519 ORTHO05D000959 2.3e-07 59.3 93 41.9
RcHm_v2.0_Chr5g0010621 Rosa chinensis HOM05D000519 ORTHO05D000959 2.3e-07 59.3 114 36.8
C01p26260 Brassica napus HOM05D000519 ORTHO05D000959 3.1e-07 58.9 79 40.5
CAN.G1263.20 Capsicum annuum HOM05D000519 ORTHO05D000959 3.1e-07 58.9 72 41.7
QL05p069213 Quercus lobata HOM05D000519 ORTHO05D000959 3.1e-07 58.9 112 35.7
Sp2g12280 Schrenkiella parvula HOM05D000519 ORTHO05D000959 3.1e-07 58.9 98 38.8
Carub.0008s0023 Capsella rubella HOM05D000519 ORTHO05D000959 4.0e-07 58.5 72 48.6
FvH4_3g08020 Fragaria vesca HOM05D000519 ORTHO05D000959 4.0e-07 58.5 112 33.9
FAN16G0731 Fragaria x ananassa HOM05D000519 ORTHO05D000959 4.0e-07 58.5 112 33.9
Gohir.D06G160600 Gossypium hirsutum HOM05D000519 ORTHO05D000959 4.0e-07 58.5 99 38.4
Psat7g244200 Pisum sativum HOM05D000519 ORTHO05D000959 4.0e-07 58.5 97 37.1
RcHm_v2.0_Chr5g0009751 Rosa chinensis HOM05D000519 ORTHO05D000959 5.2e-07 58.2 93 40.9
PGSC0003DMG402023603 Solanum tuberosum HOM05D000519 ORTHO05D000959 5.2e-07 58.2 72 40.3
Aa31LG2G12570 Aethionema arabicum HOM05D000519 ORTHO05D019510 6.8e-07 57.8 92 38.0
BcaC04g21616 Brassica carinata HOM05D000519 ORTHO05D000959 6.8e-07 57.8 96 41.7
C09p29840 Brassica napus HOM05D000519 ORTHO05D000959 6.8e-07 57.8 96 41.7
BolC9t55847H Brassica oleracea HOM05D000519 ORTHO05D000959 6.8e-07 57.8 96 41.7
Lsat_1_v5_gn_1_114780 Lactuca sativa HOM05D000519 ORTHO05D000959 6.8e-07 57.8 102 40.2
MD12G1006000 Malus domestica HOM05D000519 ORTHO05D000959 6.8e-07 57.8 104 37.5
Nitab4.5_0005135g0030 Nicotiana tabacum HOM05D000519 ORTHO05D000959 6.8e-07 57.8 98 36.7
FAN16G1004 Fragaria x ananassa HOM05D000519 ORTHO05D000959 8.9e-07 57.4 113 37.2
Lalb_Chr15g0088031 Lupinus albus HOM05D000519 ORTHO05D000959 8.9e-07 57.4 109 36.7
Nn1g03277 Nelumbo nucifera HOM05D000519 ORTHO05D000959 8.9e-07 57.4 98 38.8
RcHm_v2.0_Chr5g0009781 Rosa chinensis HOM05D000519 ORTHO05D000959 8.9e-07 57.4 87 41.4
TPR.G30458 Trifolium pratense HOM05D000519 ORTHO05D000959 8.9e-07 57.4 98 37.8
GSVIVG01003320001 Vitis vinifera HOM05D000519 ORTHO05D000959 8.9e-07 57.4 94 40.4
BcaB07g30638 Brassica carinata HOM05D000519 ORTHO05D000959 1.2e-06 57.0 99 39.4
C07p31200 Brassica napus HOM05D000519 ORTHO05D000959 1.2e-06 57.0 99 36.4
BolC4t23227H Brassica oleracea HOM05D000519 ORTHO05D000959 1.2e-06 57.0 92 38.0
Ciclev10009506m.g Citrus clementina HOM05D000519 ORTHO05D000959 1.2e-06 57.0 116 31.9
FvH4_3g07950 Fragaria vesca HOM05D000519 ORTHO05D000959 1.2e-06 57.0 108 38.0
FAN25G1172 Fragaria x ananassa HOM05D000519 ORTHO05D000959 1.2e-06 57.0 112 35.7
Lsat_1_v5_gn_1_114540 Lactuca sativa HOM05D000519 ORTHO05D000959 1.2e-06 57.0 72 43.1
Atru.chr1.2387 Acer truncatum HOM05D000519 ORTHO05D000959 1.5e-06 56.6 101 38.6
Glyma.07G266000 Glycine max HOM05D000519 ORTHO05D000959 1.5e-06 56.6 90 38.9
Glyma.15G115300 Glycine max HOM05D000519 ORTHO05D000959 1.5e-06 56.6 100 35.0
HanXRQChr17g0544761 Helianthus annuus HOM05D000519 ORTHO05D000959 1.5e-06 56.6 105 37.1
Psat1g175600 Pisum sativum HOM05D000519 ORTHO05D000959 1.5e-06 56.6 93 37.6
RcHm_v2.0_Chr5g0010271 Rosa chinensis HOM05D000519 ORTHO05D000959 1.5e-06 56.6 110 36.4
TPR.G35340 Trifolium pratense HOM05D000519 ORTHO05D000959 1.5e-06 56.6 59 45.8
Aa31LG2G12610 Aethionema arabicum HOM05D000519 ORTHO05D000959 2.0e-06 56.2 94 35.1
CAN.G449.20 Capsicum annuum HOM05D000519 ORTHO05D000959 2.0e-06 56.2 74 40.5
Thhalv10001076m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 2.0e-06 56.2 98 38.8
Lsat_1_v5_gn_1_114741 Lactuca sativa HOM05D000519 ORTHO05D000959 2.0e-06 56.2 72 43.1
BcaC06g31370 Brassica carinata HOM05D000519 ORTHO05D000959 2.6e-06 55.8 99 36.4
BcaC06g34241 Brassica carinata HOM05D000519 ORTHO05D000959 2.6e-06 55.8 99 36.4
A06p44980 Brassica napus HOM05D000519 ORTHO05D000959 2.6e-06 55.8 99 36.4
BolC4t23226H Brassica oleracea HOM05D000519 ORTHO05D000959 2.6e-06 55.8 92 39.1
BolC7t43661H Brassica oleracea HOM05D000519 ORTHO05D000959 2.6e-06 55.8 99 36.4
BraA06t27369Z Brassica rapa HOM05D000519 ORTHO05D000959 2.6e-06 55.8 99 36.4
FAN11G3787 Fragaria x ananassa HOM05D000519 ORTHO05D000959 2.6e-06 55.8 95 40.0
Gohir.A06G153900 Gossypium hirsutum HOM05D000519 ORTHO05D000959 2.6e-06 55.8 95 37.9
Phvul.006G142600 Phaseolus vulgaris HOM05D000519 ORTHO05D000959 2.6e-06 55.8 101 35.6
RcHm_v2.0_Chr5g0001151 Rosa chinensis HOM05D000519 ORTHO05D000959 2.6e-06 55.8 114 35.1
TPR.G33246 Trifolium pratense HOM05D000519 ORTHO05D000959 2.6e-06 55.8 59 45.8
Aa31LG3G7150 Aethionema arabicum HOM05D000519 ORTHO05D000959 3.4e-06 55.5 93 35.5
Aa31LG3G7160 Aethionema arabicum HOM05D000519 ORTHO05D000959 3.4e-06 55.5 93 34.4
CAN.G5949.1 Capsicum annuum HOM05D000519 ORTHO05D000959 3.4e-06 55.5 100 35.0
QL05p084144 Quercus lobata HOM05D000519 ORTHO05D000959 3.4e-06 55.5 117 34.2
TPR.G5977 Trifolium pratense HOM05D000519 ORTHO05D000959 3.4e-06 55.5 82 36.6
FAN25G0271 Fragaria x ananassa HOM05D000519 ORTHO05D000959 4.4e-06 55.1 95 38.9
TPR.G5936 Trifolium pratense HOM05D000919 ORTHO05D001187 4.4e-06 55.1 82 36.6
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 4.4e-06 55.1 74 39.2
VMungo0540G0061 Vigna mungo HOM05D000519 ORTHO05D000959 4.4e-06 55.1 100 34.0
Aqoxy1G04038 Aquilegia oxysepala HOM05D000519 ORTHO05D000959 5.8e-06 54.7 74 40.5
A05p12830 Brassica napus HOM05D000519 ORTHO05D000959 5.8e-06 54.7 92 39.1
C04p16770 Brassica napus HOM05D000519 ORTHO05D000959 5.8e-06 54.7 72 38.9
BraA05t20222Z Brassica rapa HOM05D000519 ORTHO05D000959 5.8e-06 54.7 92 39.1
SalBow8G0429 Salvia bowleyana HOM05D000519 ORTHO05D000959 5.8e-06 54.7 112 31.2
C04p16760 Brassica napus HOM05D000519 ORTHO05D000959 7.6e-06 54.3 92 38.0
CANSAT56G2160 Cannabis sativa HOM05D000519 ORTHO05D000959 7.6e-06 54.3 105 32.4
Ca_21039_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 7.6e-06 54.3 108 34.3
Thhalv10026611m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 7.6e-06 54.3 78 38.5
Gohir.A06G154000 Gossypium hirsutum HOM05D000519 ORTHO05D000959 7.6e-06 54.3 101 37.6
Nitab4.5_0001735g0110 Nicotiana tabacum HOM05D000519 ORTHO05D000959 7.6e-06 54.3 79 39.2
RcHm_v2.0_Chr3g0476921 Rosa chinensis HOM05D000519 ORTHO05D000959 7.6e-06 54.3 87 41.4
RcHm_v2.0_Chr3g0476961 Rosa chinensis HOM05D000519 ORTHO05D000959 7.6e-06 54.3 87 41.4
TPR.G21870 Trifolium pratense HOM05D000519 ORTHO05D000959 7.6e-06 54.3 81 42.0
Aa31LG7G5010 Aethionema arabicum HOM05D000519 ORTHO05D000959 9.9e-06 53.9 79 39.2
AL7G38460 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 9.9e-06 53.9 79 41.8
CAN.G1263.18 Capsicum annuum HOM05D000519 ORTHO05D000959 9.9e-06 53.9 74 37.8
CAN.G64.24 Capsicum annuum HOM05D000519 ORTHO05D000959 9.9e-06 53.9 101 35.6
Glyma.09G110600 Glycine max HOM05D000519 ORTHO05D000959 9.9e-06 53.9 106 34.0
TPR.G21872 Trifolium pratense HOM05D000519 ORTHO05D000959 9.9e-06 53.9 81 39.5


User provided reference genes

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