Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g01461 Fragaria vesca HOM05D000780 ORTHO05D009033 3.2e-162 575.1 303 100.0
RcHm_v2.0_Chr3g0449091 Rosa chinensis HOM05D000780 ORTHO05D009033 2.1e-145 519.2 307 90.6
FAN14G4937 Fragaria x ananassa HOM05D000780 ORTHO05D001132 1.1e-143 513.5 314 88.2
FAN14G3828 Fragaria x ananassa HOM05D000780 ORTHO05D001132 9.0e-141 503.8 314 88.2
FAN05G0905 Fragaria x ananassa HOM05D000780 ORTHO05D001132 8.5e-139 497.3 314 86.3
FAN02G1432 Fragaria x ananassa HOM05D000780 ORTHO05D009033 1.6e-137 493.0 305 87.9
MD12G1251900 Malus domestica HOM05D000780 ORTHO05D009033 3.3e-127 458.8 309 79.6
TAR633G0111 Trochodendron aralioides HOM05D000780 ORTHO05D009033 8.2e-110 401.0 301 73.1
Ciclev10021307m.g Citrus clementina HOM05D000780 ORTHO05D009033 4.1e-109 398.7 303 71.6
Nn1g03021 Nelumbo nucifera HOM05D000780 ORTHO05D009033 4.5e-108 395.2 304 72.4
QL01p042200 Quercus lobata HOM05D000780 ORTHO05D009033 1.3e-107 393.7 307 71.3
CSS0005756 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 5.0e-107 391.7 316 69.6
Prupe.6G353000 Prunus persica HOM05D000780 ORTHO05D009033 6.5e-107 391.3 306 69.9
Thecc.05G266300 Theobroma cacao HOM05D000780 ORTHO05D009033 5.5e-106 388.3 305 69.2
Gohir.D13G172200 Gossypium hirsutum HOM05D000780 ORTHO05D009033 9.4e-106 387.5 301 70.4
Gohir.A13G161800 Gossypium hirsutum HOM05D000780 ORTHO05D009033 1.2e-105 387.1 301 70.1
Gorai.013G188500 Gossypium raimondii HOM05D000780 ORTHO05D009033 1.2e-105 387.1 301 70.4
Potri.019G023700 Populus trichocarpa HOM05D000780 ORTHO05D009033 1.8e-104 383.3 300 70.3
TWI34G1716 Tripterygium wilfordii HOM05D000780 ORTHO05D009033 2.3e-104 382.9 309 68.0
GSVIVG01026324001 Vitis vinifera HOM05D000780 ORTHO05D009033 2.3e-104 382.9 312 69.2
Atru.chr2.1117 Acer truncatum HOM05D000780 ORTHO05D009033 4.0e-104 382.1 310 69.0
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 1.5e-103 380.2 303 68.6
CsaV3_1G045040 Cucumis sativus L. HOM05D000780 ORTHO05D009033 3.4e-103 379.0 301 68.1
Aqoxy5G00106 Aquilegia oxysepala HOM05D000780 ORTHO05D009033 6.3e-102 374.8 304 67.1
Manes.09G146600 Manihot esculenta HOM05D000780 ORTHO05D009033 1.8e-101 373.2 305 69.8
Glyma.20G221500 Glycine max HOM05D000780 ORTHO05D009033 4.1e-101 372.1 260 73.1
Hma1.2p1_0130F.1_g060510 Hydrangea macrophylla HOM05D000780 ORTHO05D009033 9.1e-101 370.9 310 66.8
PGR004G1412 Punica granatum HOM05D000780 ORTHO05D009033 3.8e-99 365.5 306 65.7
Phvul.L002032 Phaseolus vulgaris HOM05D000780 ORTHO05D009033 1.1e-98 364.0 291 65.6
Ca_09986_v3 Cicer arietinum L. HOM05D000780 ORTHO05D009033 5.5e-98 361.7 298 64.4
VMungo0720G1285 Vigna mungo HOM05D000780 ORTHO05D009033 1.6e-97 360.1 290 66.2
THA.LOC104821566 Tarenaya hassleriana HOM05D000780 ORTHO05D009033 2.1e-97 359.8 321 62.6
Actinidia06831 Actinidia chinensis HOM05D000780 ORTHO05D009033 4.7e-97 358.6 317 66.6
Lj5g0019051 Lotus japonicus HOM05D000780 ORTHO05D009033 3.0e-96 355.9 306 62.1
Carub.0007s3248 Capsella rubella HOM05D000780 ORTHO05D009033 4.0e-96 355.5 308 64.3
Lalb_Chr21g0311301 Lupinus albus HOM05D000780 ORTHO05D009033 1.2e-95 354.0 298 64.4
MBI10_g26046_MAGBIO Magnolia biondii HOM05D000780 ORTHO05D009033 1.2e-95 354.0 286 67.1
BcaC02g09559 Brassica carinata HOM05D000780 ORTHO05D009033 2.0e-95 353.2 308 63.0
BolC4t25992H Brassica oleracea HOM05D000780 ORTHO05D009033 2.0e-95 353.2 308 63.0
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 2.6e-95 352.8 299 63.5
C04p44170 Brassica napus HOM05D000780 ORTHO05D009033 5.7e-95 351.7 305 63.3
BraA04t16719Z Brassica rapa HOM05D000780 ORTHO05D009033 5.7e-95 351.7 306 62.7
Rhsim05G0170400 Rhododendron simsii HOM05D000780 ORTHO05D009033 5.7e-95 351.7 326 64.7
Medtr1g079763 Medicago truncatula HOM05D000780 ORTHO05D009033 9.8e-95 350.9 302 61.9
Ah.06g187930 Amaranthus hybridus HOM05D000780 ORTHO05D009033 1.3e-94 350.5 310 63.2
Sp7g05110 Schrenkiella parvula HOM05D000780 ORTHO05D009033 3.7e-94 349.0 304 63.2
arahy.Tifrunner.gnm1.ann1.ZAXM00 Arachis hypogaea HOM05D000780 ORTHO05D009033 1.1e-93 347.4 299 63.5
arahy.Tifrunner.gnm1.ann1.09X96J Arachis hypogaea HOM05D000780 ORTHO05D009033 1.8e-93 346.7 299 63.5
A04p10530 Brassica napus HOM05D000780 ORTHO05D009033 1.8e-93 346.7 310 62.3
Migut.F02052 Erythranthe guttata HOM05D000780 ORTHO05D009033 1.8e-93 346.7 302 64.2
Thhalv10027857m.g Eutrema salsugineum HOM05D000780 ORTHO05D009033 1.8e-93 346.7 310 61.6
AL7G45990 Arabidopsis lyrata HOM05D000780 ORTHO05D009033 3.1e-93 345.9 305 63.6
Potri.013G050300 Populus trichocarpa HOM05D000780 ORTHO05D009033 3.1e-93 345.9 267 70.0
EL10Ac4g09771 Beta vulgaris HOM05D000780 ORTHO05D009033 2.0e-92 343.2 295 64.1
CANSAT54G0520 Cannabis sativa HOM05D000780 ORTHO05D009033 2.0e-92 343.2 304 64.8
Sc24g0002520 Simmondsia chinensis HOM05D000780 ORTHO05D009033 2.0e-92 343.2 296 64.2
Lsat_1_v5_gn_9_46781 Lactuca sativa HOM05D000780 ORTHO05D009033 2.7e-92 342.8 305 61.6
AT5G37360 Arabidopsis thaliana HOM05D000780 ORTHO05D009033 3.5e-92 342.4 306 63.1
CARHR215730 Cardamine hirsuta HOM05D000780 ORTHO05D009033 5.9e-92 341.7 306 61.4
Eucgr.H04210 Eucalyptus grandis HOM05D000780 ORTHO05D009033 1.3e-91 340.5 310 63.2
MSTRG.27431 Avicennia marina HOM05D000780 ORTHO05D009033 1.7e-91 340.1 303 64.7
ClCG03G011490 Citrullus lanatus HOM05D000780 ORTHO05D009033 3.8e-91 339.0 301 63.5
MELO3C010086.2 Cucumis melo HOM05D000780 ORTHO05D009033 9.5e-90 334.3 268 67.2
AUR62006989 Chenopodium quinoa HOM05D000780 ORTHO05D009033 2.1e-89 333.2 298 62.4
Hund07171 Selenicereus undatus HOM05D000780 ORTHO05D009033 2.1e-89 333.2 301 62.5
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 1.0e-88 330.9 216 76.9
Solyc04g050470.4 Solanum lycopersicum HOM05D000780 ORTHO05D009033 1.8e-88 330.1 287 62.0
PSO210G3904 Papaver somniferum HOM05D000780 ORTHO05D009033 6.8e-88 328.2 318 60.1
vmacro19978 Vaccinium macrocarpon HOM05D000780 ORTHO05D009033 8.9e-88 327.8 372 55.4
ECA232G3479 Erigeron canadensis HOM05D000780 ORTHO05D009033 5.7e-87 325.1 283 61.5
ATR0088G058 Amborella trichopoda HOM05D000780 ORTHO05D009033 2.2e-86 323.2 281 63.3
DCAR_030971 Daucus carota HOM05D000780 ORTHO05D009033 6.4e-86 321.6 292 62.0
Nitab4.5_0003148g0030 Nicotiana tabacum HOM05D000780 ORTHO05D009033 1.6e-84 317.0 289 62.3
SalBow1G6873 Salvia bowleyana HOM05D000780 ORTHO05D009033 3.5e-84 315.8 298 59.4
Aa31LG9G18020 Aethionema arabicum HOM05D000780 ORTHO05D009033 7.8e-84 314.7 304 58.9
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 1.6e-81 307.0 249 66.7
Glyma.10G167600 Glycine max HOM05D000780 ORTHO05D009033 3.1e-80 302.8 315 56.8
Nitab4.5_0000841g0080 Nicotiana tabacum HOM05D000780 ORTHO05D009033 8.9e-80 301.2 250 65.6
unitig_37.g12284 Utricularia gibba HOM05D000780 ORTHO05D009033 1.5e-79 300.4 300 58.0
SalBow1G5981 Salvia bowleyana HOM05D000780 ORTHO05D009033 5.8e-79 298.5 328 54.0
CSS0024577 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 4.9e-78 295.4 248 68.5
Sabra19G0033700 Salix brachista HOM05D000780 ORTHO05D009033 1.1e-77 294.3 303 58.4
Haze_04472 Corylus avellana HOM05D000780 ORTHO05D009033 2.4e-77 293.1 307 58.6
SGA_v2.0_scaffold329G48830 Striga asiatica HOM05D002740 ORTHO05D003126 3.2e-77 292.7 335 53.7
Dinv01155 Davidia involucrata HOM05D000780 ORTHO05D009033 4.1e-77 292.4 212 74.5
TPR.G10273 Trifolium pratense HOM05D000780 ORTHO05D009033 3.0e-75 286.2 312 55.4
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 1.1e-74 284.3 252 61.5
Zm00001eb258750 Zea mays HOM05D000780 ORTHO05D009033 4.7e-73 278.9 276 56.2
HanXRQChr05g0145151 Helianthus annuus HOM05D000780 ORTHO05D009033 1.4e-72 277.3 285 54.0
Os02g0815400 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D009033 3.1e-72 276.2 276 55.1
CiPaw.07G074400 Carya illinoinensis HOM05D000780 ORTHO05D009033 1.5e-71 273.9 242 64.9
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 3.9e-67 259.2 274 55.5
Peaxi162Scf00077g00138 Petunia axillaris HOM05D000780 ORTHO05D009033 6.6e-67 258.5 220 66.4
Cpa.g.c33516 Carica papaya HOM05D000780 ORTHO05D009033 2.5e-66 256.5 188 70.7
MD12G1251000 Malus domestica HOM05D000072 ORTHO05D009033 9.2e-61 238.0 195 68.2
Sed0013634 Sechium edule HOM05D000780 ORTHO05D009033 3.9e-59 232.6 321 48.3
Eucgr.H04100 Eucalyptus grandis HOM05D000780 ORTHO05D009033 1.1e-58 231.1 218 62.4
MD12G1250900 Malus domestica HOM05D000780 ORTHO05D009033 4.0e-56 222.6 158 74.7
AagrBONN_evm.TU.Sc2ySwM_228.3981 Anthoceros agrestis HOM05D000780 ORTHO05D009033 3.8e-54 216.1 247 47.0
Lj2A46G68 Lonicera japonica HOM05D000780 ORTHO05D009033 3.5e-52 209.5 151 72.8
FAN09G0636 Fragaria x ananassa HOM05D000780 ORTHO05D001132 4.6e-52 209.1 114 95.6
FAN05G5022 Fragaria x ananassa HOM05D000780 ORTHO05D009033 2.4e-48 196.8 108 95.4
FAN11G0130 Fragaria x ananassa HOM05D000780 ORTHO05D009033 1.2e-44 184.5 264 49.2
SMO172G0144 Selaginella moellendorffii HOM05D000780 ORTHO05D009033 1.6e-44 184.1 213 47.9
Pp3c18_1300 Physcomitrium patens HOM05D000780 ORTHO05D009033 1.1e-42 177.9 285 41.4
Sopen04g021250 Solanum pennellii HOM05D000780 ORTHO05D009033 2.9e-38 163.3 131 66.4
CBR_g11120 Chara braunii HOM05D000780 ORTHO05D009033 1.9e-37 160.6 239 40.6
Cc09_g03030 Coffea canephora HOM05D000780 ORTHO05D009033 7.9e-36 155.2 121 69.4
HPP92_009056 Vanilla planifolia HOM05D001254 ORTHO05D001386 2.3e-35 153.7 203 46.8
SEGI_21696 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 1.3e-33 147.9 155 54.8
Cc09_g03040 Coffea canephora HOM05D000780 ORTHO05D009033 8.2e-33 145.2 150 52.7
SEGI_05244 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 9.0e-32 141.7 116 63.8
HPP92_009057 Vanilla planifolia HOM05D000780 ORTHO05D009033 2.0e-31 140.6 120 61.7
PGSC0003DMG402028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 2.6e-31 140.2 116 64.7
Eucgr.H04102 Eucalyptus grandis HOM05D000780 ORTHO05D009033 7.9e-28 128.6 210 43.8
PGSC0003DMG401028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 1.5e-18 97.8 110 51.8
FAN14G1321 Fragaria x ananassa HOM05D000780 ORTHO05D009033 2.5e-18 97.1 117 54.7
CAN.G4.37 Capsicum annuum HOM05D000780 ORTHO05D009033 1.2e-15 88.2 96 52.1
FvH4_3g18300 Fragaria vesca HOM05D000780 ORTHO05D196851 3.2e-13 80.1 50 80.0
FAN18G1636 Fragaria x ananassa HOM05D000780 ORTHO05D009033 1.0e-11 75.1 94 52.1
FAN16G0199 Fragaria x ananassa HOM05D000780 ORTHO05D210745 2.2e-09 67.4 90 47.8
FAN21G2408 Fragaria x ananassa HOM05D000780 ORTHO05D009033 2.2e-09 67.4 61 63.9


User provided reference genes

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