Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g39260 Fragaria vesca HOM05D003496 ORTHO05D003909 6.0e-234 813.9 447 100.0
RcHm_v2.0_Chr7g0243631 Rosa chinensis HOM05D003496 ORTHO05D003909 7.0e-198 694.1 440 87.5
FvH4_5g37341 Fragaria vesca HOM05D003496 ORTHO05D003909 1.0e-196 690.3 420 91.2
FAN08G2234 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.9e-195 686.0 415 91.1
FAN18G3881 Fragaria x ananassa HOM05D003496 ORTHO05D003909 4.7e-194 681.4 428 89.3
FAN18G0240 Fragaria x ananassa HOM05D003496 ORTHO05D003909 3.9e-193 678.3 415 90.1
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 2.0e-192 676.0 415 89.9
RcHm_v2.0_Chr7g0239001 Rosa chinensis HOM05D003496 ORTHO05D003909 3.1e-190 668.7 413 89.1
FvH4_6g40021 Fragaria vesca HOM05D003496 ORTHO05D003909 2.6e-189 665.6 413 88.6
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.2e-180 636.0 449 81.3
FvH4_5g32780 Fragaria vesca HOM05D003496 ORTHO05D003909 5.5e-179 631.3 438 82.6
MD15G1368600 Malus domestica HOM05D003496 ORTHO05D003909 2.8e-175 619.0 446 77.1
FAN13G0595 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.0e-173 612.8 420 83.1
FAN04G0832 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.9e-171 606.3 367 89.9
Prupe.1G516800 Prunus persica HOM05D003496 ORTHO05D003909 2.8e-170 602.4 423 79.7
FAN18G2959 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.8e-169 599.7 431 80.0
Cfa013633 Carpinus fangiana HOM05D003496 ORTHO05D003909 3.3e-155 552.4 446 70.6
Manes.18G067700 Manihot esculenta HOM05D003496 ORTHO05D003909 2.8e-146 522.7 446 66.1
Atru.chr13.1191 Acer truncatum HOM05D003496 ORTHO05D003909 3.1e-145 519.2 447 67.1
Atru.chr13.1193 Acer truncatum HOM05D003496 ORTHO05D003909 3.1e-145 519.2 447 67.1
QL12p036753 Quercus lobata HOM05D003496 ORTHO05D003909 5.2e-145 518.5 420 70.7
CANSAT25G1637 Cannabis sativa HOM05D003496 ORTHO05D003909 3.7e-143 512.3 420 68.6
Ciclev10000237m.g Citrus clementina HOM05D003496 ORTHO05D003909 3.0e-140 502.7 447 64.4
Potri.002G096400 Populus trichocarpa HOM05D003496 ORTHO05D003909 2.2e-135 486.5 447 62.9
Gohir.D05G229200 Gossypium hirsutum HOM05D003496 ORTHO05D003909 4.9e-135 485.3 418 64.8
Gohir.A05G226500 Gossypium hirsutum HOM05D003496 ORTHO05D003909 3.2e-134 482.6 418 64.6
Gorai.009G237200 Gossypium raimondii HOM05D003496 ORTHO05D003909 4.2e-134 482.3 418 64.6
Sabra02G0075900 Salix brachista HOM05D003496 ORTHO05D003909 7.1e-134 481.5 416 65.1
Dinv44773 Davidia involucrata HOM05D003496 ORTHO05D003909 3.3e-131 472.6 444 61.5
Eucgr.F00323 Eucalyptus grandis HOM05D003496 ORTHO05D003909 4.3e-131 472.2 449 62.4
CiPaw.08G045100 Carya illinoinensis HOM05D003496 ORTHO05D003909 4.0e-129 465.7 447 62.6
GSVIVG01009028001 Vitis vinifera HOM05D003496 ORTHO05D003909 1.5e-128 463.8 447 61.7
TWI56G0580 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 7.6e-128 461.5 447 60.2
Psat2g073040 Pisum sativum HOM05D003496 ORTHO05D003909 3.2e-126 456.1 447 58.4
Thecc.08G107000 Theobroma cacao HOM05D003496 ORTHO05D003909 5.4e-126 455.3 404 63.6
TPR.G16752 Trifolium pratense HOM05D003496 ORTHO05D003909 4.6e-125 452.2 468 57.3
TWI12G1339 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 2.3e-124 449.9 447 59.5
Glyma.13G089100 Glycine max HOM05D003496 ORTHO05D003909 8.7e-124 448.0 446 59.6
Medtr5g063730 Medicago truncatula HOM05D003496 ORTHO05D003909 2.5e-123 446.4 486 55.8
Lj1g0018735 Lotus japonicus HOM05D003496 ORTHO05D003909 3.3e-123 446.0 447 60.2
TAR628G0803 Trochodendron aralioides HOM05D003496 ORTHO05D003909 5.6e-123 445.3 445 58.2
CSS0008540 Camellia sinensis var. sinensis HOM05D003496 ORTHO05D003909 1.4e-121 440.7 447 59.1
THA.LOC104810802 Tarenaya hassleriana HOM05D003496 ORTHO05D003909 1.4e-121 440.7 447 56.8
PGR042G0634 Punica granatum HOM05D003496 ORTHO05D003909 1.8e-121 440.3 447 57.7
Lj5C255G21 Lonicera japonica HOM05D003496 ORTHO05D003909 6.9e-121 438.3 444 57.9
Cpa.g.sc36.129 Carica papaya HOM05D003496 ORTHO05D003909 1.1e-118 431.0 447 57.0
COL.COLO4_16402 Corchorus olitorius HOM05D003496 ORTHO05D003909 5.4e-118 428.7 370 64.6
vmacro13001 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 3.9e-116 422.5 446 55.8
Cc10_g07230 Coffea canephora HOM05D003496 ORTHO05D003909 8.7e-116 421.4 445 57.3
AT1G22275 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 1.6e-114 417.2 447 53.0
vmacro18796 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 1.8e-113 413.7 446 55.6
Ca_05276_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 2.6e-112 409.8 447 55.5
Ca_05283_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 2.6e-112 409.8 447 55.5
Sc23g0000220 Simmondsia chinensis HOM05D003496 ORTHO05D003909 7.6e-112 408.3 474 52.1
arahy.Tifrunner.gnm1.ann1.ZN2UT8 Arachis hypogaea HOM05D003496 ORTHO05D003909 9.9e-112 407.9 446 55.6
EL10Ac1g01221 Beta vulgaris HOM05D003496 ORTHO05D003909 9.9e-112 407.9 447 56.6
AL1G35730 Arabidopsis lyrata HOM05D003496 ORTHO05D003909 8.4e-111 404.8 447 52.1
Sed0000627 Sechium edule HOM05D003496 ORTHO05D003909 1.1e-110 404.4 409 57.7
AT1G22260 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 7.1e-110 401.7 447 51.7
Carub.0001s2181 Capsella rubella HOM05D003496 ORTHO05D003909 1.2e-109 401.0 447 51.7
VMungo0647G0446 Vigna mungo HOM05D003496 ORTHO05D003909 1.2e-109 401.0 446 55.8
arahy.Tifrunner.gnm1.ann1.92N1A9 Arachis hypogaea HOM05D003496 ORTHO05D003909 1.6e-109 400.6 446 54.9
Actinidia27185 Actinidia chinensis HOM05D003496 ORTHO05D003909 2.7e-109 399.8 437 54.9
MELO3C003452.2 Cucumis melo HOM05D003496 ORTHO05D003909 5.6e-107 392.1 447 53.7
Phvul.008G173500 Phaseolus vulgaris HOM05D003496 ORTHO05D003909 9.6e-107 391.3 446 54.7
CAN.G101.20 Capsicum annuum HOM05D003496 ORTHO05D003909 6.2e-106 388.7 443 52.4
Ah.05g169990 Amaranthus hybridus HOM05D003496 ORTHO05D003909 1.5e-104 384.0 448 53.3
Oeu046297.1 Olea europaea HOM05D003496 ORTHO05D003909 5.8e-104 382.1 443 53.3
Aqoxy6G00790 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 2.9e-103 379.8 439 54.0
Sopen04g029300 Solanum pennellii HOM05D003496 ORTHO05D003909 8.4e-103 378.3 444 50.9
DCAR_031330 Daucus carota HOM05D003496 ORTHO05D003909 1.1e-102 377.9 447 50.8
ClCG11G015270 Citrullus lanatus HOM05D003496 ORTHO05D003909 3.2e-102 376.3 443 52.4
Carub.0001s2183 Capsella rubella HOM05D003496 ORTHO05D003909 1.2e-101 374.4 447 49.4
PSO832G0815 Papaver somniferum HOM05D003496 ORTHO05D003909 2.1e-101 373.6 427 52.5
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 2.7e-101 373.2 448 50.4
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 4.6e-101 372.5 448 50.4
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 4.6e-101 372.5 448 50.4
PSO063G1836 Papaver somniferum HOM05D003496 ORTHO05D003909 6.1e-101 372.1 427 52.2
Hund16907 Selenicereus undatus HOM05D003496 ORTHO05D003909 6.1e-101 372.1 445 51.7
Thhalv10018107m.g Eutrema salsugineum HOM05D003496 ORTHO05D003909 2.3e-100 370.2 447 49.9
PSO761G0292 Papaver somniferum HOM05D003496 ORTHO05D003909 3.9e-100 369.4 427 52.0
Hund16910 Selenicereus undatus HOM05D003496 ORTHO05D003909 3.9e-100 369.4 437 52.2
Sp5g33310 Schrenkiella parvula HOM05D003496 ORTHO05D003909 5.1e-100 369.0 439 51.0
PGSC0003DMG400006412 Solanum tuberosum HOM05D003496 ORTHO05D003909 5.1e-100 369.0 439 50.8
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 9.7e-99 364.8 448 49.3
RcHm_v2.0_Chr0c28g0501001 Rosa chinensis HOM05D003496 ORTHO05D003909 9.7e-99 364.8 233 86.7
RcHm_v2.0_Chr0c28g0501041 Rosa chinensis HOM05D003496 ORTHO05D003909 9.7e-99 364.8 233 86.7
RcHm_v2.0_Chr7g0243601 Rosa chinensis HOM05D003496 ORTHO05D003909 9.7e-99 364.8 233 86.7
Oeu012925.3 Olea europaea HOM05D003496 ORTHO05D003909 1.3e-98 364.4 489 48.3
BcaB02g07153 Brassica carinata HOM05D003496 ORTHO05D003909 1.6e-98 364.0 439 50.1
RcHm_v2.0_Chr7g0243551 Rosa chinensis HOM05D003496 ORTHO05D003909 6.3e-98 362.1 231 86.6
BcaB03g15989 Brassica carinata HOM05D003496 ORTHO05D003909 1.8e-97 360.5 443 49.7
Lj5C269T10 Lonicera japonica HOM05D003496 ORTHO05D003909 1.8e-97 360.5 439 51.0
BcaC08g47393 Brassica carinata HOM05D003496 ORTHO05D003909 3.1e-97 359.8 473 48.0
BcaC08g45430 Brassica carinata HOM05D003496 ORTHO05D003909 4.1e-97 359.4 447 48.1
C06p30630 Brassica napus HOM05D003496 ORTHO05D003909 4.1e-97 359.4 447 48.1
Nitab4.5_0000232g0220 Nicotiana tabacum HOM05D003496 ORTHO05D003909 4.1e-97 359.4 443 49.2
BolC6t38227H Brassica oleracea HOM05D003496 ORTHO05D003909 6.9e-97 358.6 447 48.1
Aa31LG7G6200 Aethionema arabicum HOM05D003496 ORTHO05D003909 2.0e-96 357.1 447 49.7
CsaV3_3G048690 Cucumis sativus L. HOM05D003496 ORTHO05D003909 3.4e-96 356.3 429 50.8
Nn1g05352 Nelumbo nucifera HOM05D003496 ORTHO05D003909 4.5e-96 355.9 379 55.4
HanXRQChr13g0402471 Helianthus annuus HOM05D003496 ORTHO05D003909 1.7e-95 354.0 449 49.7
Migut.C01172 Erythranthe guttata HOM05D003496 ORTHO05D003909 5.5e-94 349.0 445 49.7
A07p27660 Brassica napus HOM05D003496 ORTHO05D003909 1.6e-93 347.4 441 47.4
Rhsim06G0082300 Rhododendron simsii HOM05D003496 ORTHO05D003909 1.0e-92 344.7 463 47.7
SGA_v2.0_scaffold24G10490 Striga asiatica HOM05D003496 ORTHO05D003909 3.7e-90 336.3 432 48.8
Lsat_1_v5_gn_1_3120 Lactuca sativa HOM05D003496 ORTHO05D003909 5.3e-89 332.4 443 49.0
Peaxi162Scf00041g01739 Petunia axillaris HOM05D003496 ORTHO05D003909 5.3e-89 332.4 443 47.0
BcaB03g15988 Brassica carinata HOM05D003496 ORTHO05D003909 5.9e-88 328.9 454 46.7
AUR62038519 Chenopodium quinoa HOM05D003496 ORTHO05D003909 7.7e-88 328.6 445 49.2
ECA233G4469 Erigeron canadensis HOM05D003496 ORTHO05D003909 1.4e-86 324.3 447 47.2
FAN18G0092 Fragaria x ananassa HOM05D003496 ORTHO05D003909 4.2e-86 322.8 314 64.3
SHI03709 Sapria himalayana HOM05D003496 ORTHO05D000023 4.2e-86 322.8 379 51.2
HanXRQChr13g0402531 Helianthus annuus HOM05D003496 ORTHO05D003909 7.9e-85 318.5 462 46.3
Nitab4.5_0005777g0080 Nicotiana tabacum HOM05D003496 ORTHO05D003909 1.4e-84 317.8 438 46.3
BraA07t30407Z Brassica rapa HOM05D003496 ORTHO05D003909 1.5e-83 314.3 497 41.4
vmacro18810 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 2.2e-79 300.4 394 47.5
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 5.0e-79 299.3 415 47.5
Actinidia10322 Actinidia chinensis HOM05D003496 ORTHO05D003909 1.1e-78 298.1 279 60.9
Glyma.14G173000 Glycine max HOM05D003496 ORTHO05D003909 7.2e-78 295.4 340 51.5
ATR0782G233 Amborella trichopoda HOM05D003496 ORTHO05D003909 1.4e-76 291.2 447 42.5
TPR.G7886 Trifolium pratense HOM05D003496 ORTHO05D003909 3.9e-76 289.7 308 51.6
AUR62027754 Chenopodium quinoa HOM05D003496 ORTHO05D003909 3.5e-72 276.6 445 44.0
Actinidia30771 Actinidia chinensis HOM05D003496 ORTHO05D003909 5.0e-71 272.7 274 59.9
FAN08G0731 Fragaria x ananassa HOM05D003496 ORTHO05D003909 5.9e-64 249.2 223 68.2
Os04g0452500 Oryza sativa ssp. japonica HOM05D003496 ORTHO05D003909 2.2e-63 247.3 403 41.2
Zm00001eb423930 Zea mays HOM05D003496 ORTHO05D003909 1.1e-62 245.0 393 41.5
RcHm_v2.0_Chr0c28g0500951 Rosa chinensis HOM05D003496 ORTHO05D003909 1.5e-62 244.6 145 87.6
vmacro21271 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 1.5e-62 244.6 450 41.1
FAN08G1794 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.9e-62 244.2 211 69.7
HPP92_004286 Vanilla planifolia HOM05D003496 ORTHO05D003909 7.2e-62 242.3 428 37.1
Lj5A269G20 Lonicera japonica HOM05D003496 ORTHO05D003909 2.7e-56 223.8 294 46.6
CDE10G0427 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 3.6e-53 213.4 353 40.8
Lalb_Chr10g0102391 Lupinus albus HOM05D003496 ORTHO05D003909 1.5e-51 208.0 215 61.9
Lalb_Chr10g0102381 Lupinus albus HOM05D003496 ORTHO05D003909 7.0e-49 199.1 231 49.8
C05p24820 Brassica napus HOM05D000415 ORTHO05D003909 2.9e-47 193.7 270 46.7
BolC5t31211H Brassica oleracea HOM05D003496 ORTHO05D003909 2.9e-47 193.7 270 46.7
CAN.G1227.18 Capsicum annuum HOM05D003496 ORTHO05D003909 1.3e-42 178.3 143 69.2
MSTRG.1476 Avicennia marina HOM05D003496 ORTHO05D003909 7.8e-40 169.1 264 40.9
Duzib093G1287 Durio zibethinus HOM05D003496 ORTHO05D003909 3.9e-39 166.8 233 46.8
SEGI_13289 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 1.7e-31 141.4 409 30.8
MSTRG.1477 Avicennia marina HOM05D003496 ORTHO05D003909 2.3e-28 131.0 103 71.8
FvH4_5g37879 Fragaria vesca HOM05D003496 ORTHO05D003909 5.8e-27 126.3 84 83.3
FvH4_5g32650 Fragaria vesca HOM05D003496 ORTHO05D003909 2.5e-22 110.9 74 87.8
Mapoly0040s0123 Marchantia polymorpha HOM05D003496 ORTHO05D003909 1.6e-21 108.2 163 39.9
SMO230G0003 Selaginella moellendorffii HOM05D003496 ORTHO05D003909 4.0e-20 103.6 431 28.3
BcaC05g26434 Brassica carinata HOM05D000415 ORTHO05D003909 6.8e-20 102.8 287 33.8
unitig_899.g14555 Utricularia gibba HOM05D003496 ORTHO05D003909 7.6e-19 99.4 340 26.2
RcHm_v2.0_Chr0c28g0500941 Rosa chinensis HOM05D003496 ORTHO05D003909 2.1e-16 91.3 64 85.9
Haze_22265 Corylus avellana HOM05D003496 ORTHO05D003909 2.3e-15 87.8 70 75.7
CARHR022630 Cardamine hirsuta HOM05D003496 ORTHO05D003909 1.9e-14 84.7 116 39.7
SEGI_27299 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 1.9e-14 84.7 433 24.0
CARHR022660 Cardamine hirsuta HOM05D003496 ORTHO05D003909 3.3e-14 84.0 287 25.4
BcaC08g44544 Brassica carinata HOM05D003496 ORTHO05D003909 7.3e-14 82.8 102 52.9
C06p20140 Brassica napus HOM05D000331 ORTHO05D027779 1.6e-13 81.6 190 38.4
Aa31sc26G120 Aethionema arabicum HOM05D003496 ORTHO05D003909 1.4e-12 78.6 132 42.4
CARHR022640 Cardamine hirsuta HOM05D003496 ORTHO05D003909 2.4e-12 77.8 96 46.9
AagrBONN_evm.TU.Sc2ySwM_344.2872 Anthoceros agrestis HOM05D003496 ORTHO05D003909 5.8e-11 73.2 94 44.7
CBR_g45286 Chara braunii HOM05D003496 ORTHO05D003909 1.4e-09 68.6 170 31.2
BolC6t37194H Brassica oleracea HOM05D013757 ORTHO05D027779 4.2e-09 67.0 107 47.7
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 6.0e-08 63.2 111 42.3


User provided reference genes

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