Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g38640 Fragaria vesca HOM05D000112 ORTHO05D026260 3.0e-90 335.1 164 100.0
FvH4_5g38770 Fragaria vesca HOM05D000112 ORTHO05D005280 6.3e-88 327.4 164 97.6
FAN18G2720 Fragaria x ananassa HOM05D000112 ORTHO05D005280 5.9e-86 320.9 164 95.7
FAN04G1771 Fragaria x ananassa HOM05D000112 ORTHO05D005280 5.0e-85 317.8 164 95.1
FAN13G1946 Fragaria x ananassa HOM05D000112 ORTHO05D005280 6.5e-85 317.4 164 95.1
FAN08G3471 Fragaria x ananassa HOM05D000112 ORTHO05D005280 2.3e-82 308.9 164 94.5
RcHm_v2.0_Chr7g0240691 Rosa chinensis HOM05D000112 ORTHO05D005280 2.1e-75 285.8 165 86.7
Prupe.1G507000 Prunus persica HOM05D000112 ORTHO05D005280 2.8e-56 222.2 173 70.5
MD00G1103900 Malus domestica HOM05D000112 ORTHO05D005280 1.7e-45 186.4 170 63.5
FvH4_5g38681 Fragaria vesca HOM05D000112 ORTHO05D026260 2.8e-43 179.1 90 96.7
MD15G1359400 Malus domestica HOM05D000112 ORTHO05D005280 6.1e-43 177.9 173 61.3
QL12p035420 Quercus lobata HOM05D000112 ORTHO05D005280 1.2e-38 163.7 175 56.0
Haze_00537 Corylus avellana HOM05D000112 ORTHO05D005280 1.0e-37 160.6 176 56.8
Cfa015951 Carpinus fangiana HOM05D000112 ORTHO05D005280 1.1e-36 157.1 176 56.2
FvH4_5g38690 Fragaria vesca HOM05D000112 ORTHO05D005280 1.9e-36 156.4 80 95.0
Dinv26727 Davidia involucrata HOM05D000112 ORTHO05D005280 4.3e-36 155.2 173 55.5
CiPaw.06G024100 Carya illinoinensis HOM05D000112 ORTHO05D005280 1.4e-34 150.2 175 55.4
Cpa.g.sc49.122 Carica papaya HOM05D000112 ORTHO05D005280 2.3e-34 149.4 177 52.0
Ca_25765_v3 Cicer arietinum L. HOM05D000112 ORTHO05D005280 6.8e-34 147.9 175 50.9
Psat5g135840 Pisum sativum HOM05D000112 ORTHO05D005280 2.6e-33 146.0 175 52.6
Manes.18G072400 Manihot esculenta HOM05D000112 ORTHO05D005280 3.4e-33 145.6 177 52.5
QL07p008129 Quercus lobata HOM05D000002 ORTHO05D000001 4.4e-33 145.2 157 54.8
Ciclev10000693m.g Citrus clementina HOM05D000112 ORTHO05D005280 1.4e-31 140.2 180 48.9
Duzib041G0594 Durio zibethinus HOM05D000112 ORTHO05D005280 1.9e-31 139.8 170 50.6
Potri.002G089900 Populus trichocarpa HOM05D000112 ORTHO05D005280 9.2e-31 137.5 173 49.1
Lj1g0018828 Lotus japonicus HOM05D000112 ORTHO05D005280 1.6e-30 136.7 175 50.9
Medtr3g073420 Medicago truncatula HOM05D000112 ORTHO05D005280 6.0e-30 134.8 173 49.7
Actinidia02584 Actinidia chinensis HOM05D000112 ORTHO05D005280 1.0e-29 134.0 178 50.0
Gohir.A06G040200 Gossypium hirsutum HOM05D000112 ORTHO05D005280 1.3e-29 133.7 170 48.8
Gohir.D06G041200 Gossypium hirsutum HOM05D000112 ORTHO05D005280 1.3e-29 133.7 170 48.8
Gorai.010G046000 Gossypium raimondii HOM05D000112 ORTHO05D005280 1.7e-29 133.3 170 48.8
TPR.G32931 Trifolium pratense HOM05D000112 ORTHO05D005280 1.7e-29 133.3 175 48.6
Duzib116G0352 Durio zibethinus HOM05D000112 ORTHO05D005280 2.3e-29 132.9 164 50.0
Duzib093G0658 Durio zibethinus HOM05D000112 ORTHO05D005280 5.0e-29 131.7 170 50.0
Potri.005G171300 Populus trichocarpa HOM05D000112 ORTHO05D005280 1.1e-28 130.6 173 48.6
Gorai.009G241900 Gossypium raimondii HOM05D000112 ORTHO05D005280 1.9e-28 129.8 164 49.4
Gohir.A05G231300 Gossypium hirsutum HOM05D000112 ORTHO05D005280 4.3e-28 128.6 164 49.4
Thecc.08G115900 Theobroma cacao HOM05D000112 ORTHO05D005280 4.3e-28 128.6 177 49.2
Gohir.D05G233800 Gossypium hirsutum HOM05D000112 ORTHO05D005280 1.2e-27 127.1 164 48.8
COL.COLO4_21812 Corchorus olitorius HOM05D000112 ORTHO05D005280 2.8e-27 125.9 173 49.1
Sabra02G0070800 Salix brachista HOM05D000112 ORTHO05D005280 3.6e-27 125.6 173 45.7
Lj4A547G41 Lonicera japonica HOM05D000112 ORTHO05D005280 8.1e-27 124.4 175 48.6
Sabra05G0128800 Salix brachista HOM05D000112 ORTHO05D005280 1.4e-26 123.6 174 46.6
Lj4A576G36 Lonicera japonica HOM05D000112 ORTHO05D005280 2.3e-26 122.9 175 48.0
CSS0030407 Camellia sinensis var. sinensis HOM05D000112 ORTHO05D005280 3.1e-26 122.5 145 51.0
Lalb_Chr11g0065641 Lupinus albus HOM05D000112 ORTHO05D005280 3.1e-26 122.5 160 49.4
TAR628G1075 Trochodendron aralioides HOM05D000112 ORTHO05D005280 6.8e-26 121.3 179 46.4
Dinv27391 Davidia involucrata HOM05D002692 ORTHO05D005280 3.4e-25 119.0 146 50.7
ClCG08G010910 Citrullus lanatus HOM05D000112 ORTHO05D005280 4.4e-25 118.6 115 54.8
CiPaw.05G230000 Carya illinoinensis HOM05D000112 ORTHO05D005280 1.3e-24 117.1 109 61.5
Rhsim11G0064700 Rhododendron simsii HOM05D000112 ORTHO05D005280 1.3e-24 117.1 176 46.0
GSVIVG01008950001 Vitis vinifera HOM05D000112 ORTHO05D005280 3.7e-24 115.5 132 55.3
arahy.Tifrunner.gnm1.ann1.35XBQI Arachis hypogaea HOM05D000112 ORTHO05D005280 1.4e-23 113.6 172 44.2
arahy.Tifrunner.gnm1.ann1.Q8HI94 Arachis hypogaea HOM05D000112 ORTHO05D005280 1.4e-23 113.6 172 44.2
CsaV3_1G023020 Cucumis sativus L. HOM05D000112 ORTHO05D005280 1.2e-22 110.5 112 54.5
MELO3C011372.2 Cucumis melo HOM05D000112 ORTHO05D005280 2.7e-22 109.4 112 52.7
CSS0035424 Camellia sinensis var. sinensis HOM05D000112 ORTHO05D005280 3.5e-22 109.0 175 45.1
TAR624G0499 Trochodendron aralioides HOM05D000112 ORTHO05D005280 4.6e-22 108.6 151 48.3
Nn1g08508 Nelumbo nucifera HOM05D000112 ORTHO05D005280 1.7e-21 106.7 180 43.3
Lalb_Chr10g0102021 Lupinus albus HOM05D000112 ORTHO05D005280 3.0e-21 105.9 174 44.8
Glyma.04G254200 Glycine max HOM05D000112 ORTHO05D005280 1.1e-20 104.0 133 51.1
DCAR_014788 Daucus carota HOM05D000112 ORTHO05D005280 7.3e-20 101.3 166 41.6
Hma1.2p1_0251F.1_g102580 Hydrangea macrophylla HOM05D000112 ORTHO05D005280 7.3e-20 101.3 172 42.4
VMungo0647G1442 Vigna mungo HOM05D000112 ORTHO05D005280 7.3e-20 101.3 133 48.1
Sed0017908 Sechium edule HOM05D000112 ORTHO05D005280 9.5e-20 100.9 125 44.8
Hund16818 Selenicereus undatus HOM05D000112 ORTHO05D005280 9.5e-20 100.9 138 44.9
Phvul.008G168700 Phaseolus vulgaris HOM05D000112 ORTHO05D005280 1.2e-19 100.5 138 48.6
THA.LOC104813638 Tarenaya hassleriana HOM05D000112 ORTHO05D005280 1.6e-19 100.1 147 44.2
Glyma.13G084700 Glycine max HOM05D000112 ORTHO05D005280 4.7e-19 98.6 135 46.7
Actinidia29434 Actinidia chinensis HOM05D000112 ORTHO05D005280 1.8e-18 96.7 135 45.2
Lalb_Chr23g0270791 Lupinus albus HOM05D000112 ORTHO05D005280 1.8e-18 96.7 112 53.6
vmacro00786 Vaccinium macrocarpon HOM05D000112 ORTHO05D005280 2.4e-18 96.3 156 42.9
MBI09_g12158_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D005280 6.8e-18 94.7 179 40.8
Atru.chr13.1307 Acer truncatum HOM05D000112 ORTHO05D026260 1.2e-17 94.0 111 52.3
Nitab4.5_0004737g0010 Nicotiana tabacum HOM05D000112 ORTHO05D005280 2.6e-17 92.8 179 39.1
Nitab4.5_0000051g0180 Nicotiana tabacum HOM05D000112 ORTHO05D005280 4.4e-17 92.0 179 38.5
Eucgr.F04380 Eucalyptus grandis HOM05D000112 ORTHO05D005280 5.8e-17 91.7 150 44.0
Glyma.14G166500 Glycine max HOM05D000112 ORTHO05D005280 5.8e-17 91.7 129 47.3
Peaxi162Scf00662g00021 Petunia axillaris HOM05D000112 ORTHO05D005280 9.9e-17 90.9 176 38.6
Actinidia03494 Actinidia chinensis HOM05D000112 ORTHO05D005280 4.9e-16 88.6 112 47.3
A07p27800 Brassica napus HOM05D000112 ORTHO05D005280 8.4e-16 87.8 143 40.6
BraA07t30419Z Brassica rapa HOM05D000112 ORTHO05D005280 8.4e-16 87.8 143 40.6
Ah.16g109680 Amaranthus hybridus HOM05D000112 ORTHO05D005280 1.1e-15 87.4 127 42.5
C06p30760 Brassica napus HOM05D000112 ORTHO05D005280 1.9e-15 86.7 143 39.9
BolC6t38241H Brassica oleracea HOM05D000112 ORTHO05D005280 1.9e-15 86.7 143 39.9
Sp5g33010 Schrenkiella parvula HOM05D000112 ORTHO05D005280 1.9e-15 86.7 140 38.6
CAN.G255.8 Capsicum annuum HOM05D000112 ORTHO05D005280 2.4e-15 86.3 166 39.2
BcaC08g45448 Brassica carinata HOM05D000112 ORTHO05D005280 4.2e-15 85.5 143 39.9
PGR044G2358 Punica granatum HOM05D000112 ORTHO05D005280 7.1e-15 84.7 170 40.0
Carub.0002s2474 Capsella rubella HOM05D000112 ORTHO05D005280 4.6e-14 82.0 137 40.1
Oeu001996.1 Olea europaea HOM05D000112 ORTHO05D005280 1.0e-13 80.9 160 38.8
Oeu039588.1 Olea europaea HOM05D000112 ORTHO05D005280 1.3e-13 80.5 114 47.4
AUR62023601 Chenopodium quinoa HOM05D000112 ORTHO05D005280 2.3e-13 79.7 129 38.0
Thhalv10018331m.g Eutrema salsugineum HOM05D000112 ORTHO05D005280 2.3e-13 79.7 149 35.6
AL2G38080 Arabidopsis lyrata HOM05D000112 ORTHO05D005280 3.9e-13 79.0 133 41.4
CARHR071330 Cardamine hirsuta HOM05D000112 ORTHO05D005280 3.9e-13 79.0 147 37.4
AUR62033846 Chenopodium quinoa HOM05D000112 ORTHO05D005280 1.5e-12 77.0 128 39.8
AUR62035452 Chenopodium quinoa HOM05D000112 ORTHO05D005280 1.5e-12 77.0 128 39.8
AUR62004685 Chenopodium quinoa HOM05D000112 ORTHO05D005280 1.9e-12 76.6 128 38.3
AT1G77850 Arabidopsis thaliana HOM05D000112 ORTHO05D005280 5.6e-12 75.1 138 39.9
BcaB02g07135 Brassica carinata HOM05D000112 ORTHO05D005280 7.3e-12 74.7 115 40.9
EL10Ac1g00046 Beta vulgaris HOM05D000112 ORTHO05D005280 9.6e-12 74.3 114 39.5
MBI16_g07654_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D005280 9.6e-12 74.3 141 41.1
Sc01g0001590 Simmondsia chinensis HOM05D000112 ORTHO05D005280 1.6e-11 73.6 128 38.3
VMungo1309G2631 Vigna mungo HOM05D000112 ORTHO05D005280 4.7e-11 72.0 132 41.7
TPR.G30418 Trifolium pratense HOM05D000112 ORTHO05D005280 3.1e-10 69.3 144 38.2
AUR62039546 Chenopodium quinoa HOM05D000112 ORTHO05D005280 7.6e-09 64.7 130 40.0
Medtr5g061220 Medicago truncatula HOM05D000112 ORTHO05D005280 7.6e-09 64.7 131 35.9
SHI09676 Sapria himalayana HOM05D000112 ORTHO05D026260 7.6e-09 64.7 133 39.1
Solyc11g013470.1 Solanum lycopersicum HOM05D000112 ORTHO05D005280 2.9e-08 62.8 119 39.5
arahy.Tifrunner.gnm1.ann1.UH60M2 Arachis hypogaea HOM05D000112 ORTHO05D005280 3.8e-08 62.4 119 41.2
Phvul.009G026200 Phaseolus vulgaris HOM05D000112 ORTHO05D005280 8.4e-08 61.2 132 37.9
Sopen11g008490 Solanum pennellii HOM05D000112 ORTHO05D005280 2.4e-07 59.7 119 38.7
arahy.Tifrunner.gnm1.ann1.ZW7I7X Arachis hypogaea HOM05D000112 ORTHO05D005280 4.2e-07 58.9 119 39.5
arahy.Tifrunner.gnm1.ann1.W230FE Arachis hypogaea HOM05D000112 ORTHO05D005280 5.4e-07 58.5 114 42.1
arahy.Tifrunner.gnm1.ann1.ER65H4 Arachis hypogaea HOM05D000112 ORTHO05D005280 9.3e-07 57.8 114 42.1
DCAR_014278 Daucus carota HOM05D000112 ORTHO05D005280 2.7e-06 56.2 112 38.4
C06p51770 Brassica napus HOM05D000112 ORTHO05D005280 3.5e-06 55.8 139 36.0
BolC6t40199H Brassica oleracea HOM05D000112 ORTHO05D005280 6.0e-06 55.1 139 36.0


User provided reference genes

Program Settings