Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g38090 Fragaria vesca HOM05D007703 ORTHO05D009731 1.3e-35 152.5 77 100.0
FAN13G1213 Fragaria x ananassa HOM05D007703 ORTHO05D009731 6.4e-35 150.2 77 98.7
FAN04G3187 Fragaria x ananassa HOM05D007703 ORTHO05D009731 3.2e-34 147.9 77 97.4
RcHm_v2.0_Chr7g0240051 Rosa chinensis HOM05D007703 ORTHO05D009731 1.3e-32 142.5 77 94.8
Prupe.1G511400 Prunus persica HOM05D007703 ORTHO05D009731 6.5e-27 123.6 77 80.5
CiPaw.05G232600 Carya illinoinensis HOM05D007703 ORTHO05D009731 1.6e-22 109.0 78 71.8
Atru.chr13.1271 Acer truncatum HOM05D007703 ORTHO05D009731 3.7e-22 107.8 77 70.1
MSTRG.24946 Avicennia marina HOM05D007703 ORTHO05D009731 1.4e-21 105.9 83 69.9
Gohir.A06G038300 Gossypium hirsutum HOM05D007703 ORTHO05D009731 1.4e-21 105.9 77 68.8
QL12p035855 Quercus lobata HOM05D007703 ORTHO05D009731 2.4e-21 105.1 76 71.1
COL.COLO4_16476 Corchorus olitorius HOM05D007703 ORTHO05D009731 6.9e-21 103.6 77 70.1
Duzib116G0261 Durio zibethinus HOM05D007703 ORTHO05D009731 6.9e-21 103.6 77 70.1
Gohir.D06G040000 Gossypium hirsutum HOM05D007703 ORTHO05D009731 1.2e-20 102.8 77 67.5
Gorai.010G044500 Gossypium raimondii HOM05D007703 ORTHO05D009731 1.2e-20 102.8 77 67.5
PGR042G2694 Punica granatum HOM05D007703 ORTHO05D009731 1.2e-20 102.8 77 68.8
GSVIVG01008983001 Vitis vinifera HOM05D007703 ORTHO05D009731 1.5e-20 102.4 80 68.8
Lalb_Chr04g0253231 Lupinus albus HOM05D007703 ORTHO05D009731 3.4e-20 101.3 82 62.2
Phvul.008G170600 Phaseolus vulgaris HOM05D007703 ORTHO05D009731 3.4e-20 101.3 77 63.6
Eucgr.F00482 Eucalyptus grandis HOM05D007703 ORTHO05D009731 4.5e-20 100.9 77 68.8
Psat0s3920g0040 Pisum sativum HOM05D007703 ORTHO05D009731 7.6e-20 100.1 80 65.0
Potri.005G167200 Populus trichocarpa HOM05D007703 ORTHO05D009731 1.0e-19 99.8 77 67.5
Nitab4.5_0002566g0010 Nicotiana tabacum HOM05D007703 ORTHO05D009731 1.3e-19 99.4 61 78.7
Thecc.08G112500 Theobroma cacao HOM05D007703 ORTHO05D009731 1.3e-19 99.4 77 67.5
arahy.Tifrunner.gnm1.ann1.DJB4SG Arachis hypogaea HOM05D007703 ORTHO05D009731 1.7e-19 99.0 82 63.4
AUR62034365 Chenopodium quinoa HOM05D007703 ORTHO05D009731 1.7e-19 99.0 77 66.2
Ciclev10003047m.g Citrus clementina HOM05D007703 ORTHO05D009731 1.7e-19 99.0 74 68.9
TWI56G0976 Tripterygium wilfordii HOM05D007703 ORTHO05D009731 1.7e-19 99.0 77 67.5
AUR62022343 Chenopodium quinoa HOM05D007703 ORTHO05D009731 2.2e-19 98.6 77 66.2
Ca_05260_v3 Cicer arietinum L. HOM05D007703 ORTHO05D009731 2.2e-19 98.6 77 66.2
Nitab4.5_0000425g0040 Nicotiana tabacum HOM05D007703 ORTHO05D009731 2.2e-19 98.6 61 77.0
PGSC0003DMG400008548 Solanum tuberosum HOM05D007703 ORTHO05D009731 2.2e-19 98.6 79 65.8
Manes.02G156200 Manihot esculenta HOM05D007703 ORTHO05D009731 2.9e-19 98.2 79 68.4
Nn1g05271 Nelumbo nucifera HOM05D007703 ORTHO05D009731 2.9e-19 98.2 79 65.8
Peaxi162Scf00160g01521 Petunia axillaris HOM05D007703 ORTHO05D009731 3.8e-19 97.8 78 65.4
Sopen12g029570 Solanum pennellii HOM05D007703 ORTHO05D009731 3.8e-19 97.8 80 67.5
Sabra05G0127000 Salix brachista HOM05D007703 ORTHO05D009731 5.0e-19 97.4 77 66.2
Aa31LG7G6100 Aethionema arabicum HOM05D007703 ORTHO05D009731 8.5e-19 96.7 77 64.9
arahy.Tifrunner.gnm1.ann1.0YA8SQ Arachis hypogaea HOM05D007703 ORTHO05D009731 8.5e-19 96.7 82 62.2
CANSAT25G3270 Cannabis sativa HOM05D007703 ORTHO05D009731 8.5e-19 96.7 86 60.5
RcHm_v2.0_Chr2g0097791 Rosa chinensis HOM05D007703 ORTHO05D009731 8.5e-19 96.7 56 80.4
Glyma.13G087000 Glycine max HOM05D007703 ORTHO05D009731 1.4e-18 95.9 78 62.8
TPR.G1060 Trifolium pratense HOM05D007703 ORTHO05D009731 1.4e-18 95.9 80 61.2
Glyma.14G169200 Glycine max HOM05D007703 ORTHO05D009731 1.9e-18 95.5 78 62.8
SalBow7G3803 Salvia bowleyana HOM05D007703 ORTHO05D009731 1.9e-18 95.5 80 66.2
Hma1.2p1_0120F.1_g057000 Hydrangea macrophylla HOM05D007703 ORTHO05D009731 2.5e-18 95.1 90 60.0
CsaV3_5G023730 Cucumis sativus L. HOM05D007703 ORTHO05D009731 3.2e-18 94.7 81 63.0
Solyc12g056910.2 Solanum lycopersicum HOM05D007703 ORTHO05D009731 3.2e-18 94.7 80 66.2
CAN.G144.17 Capsicum annuum HOM05D007703 ORTHO05D009731 4.2e-18 94.4 53 84.9
Lj1g0023708 Lotus japonicus HOM05D007703 ORTHO05D009731 4.2e-18 94.4 83 59.0
CDE10G0679 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 5.5e-18 94.0 77 62.3
HanXRQChr05g0144121 Helianthus annuus HOM05D007703 ORTHO05D009731 5.5e-18 94.0 65 70.8
Sed0012287 Sechium edule HOM05D007703 ORTHO05D009731 5.5e-18 94.0 81 61.7
Cc10_g05880 Coffea canephora HOM05D007703 ORTHO05D009731 7.2e-18 93.6 81 63.0
Aqoxy6G00561 Aquilegia oxysepala HOM05D007703 ORTHO05D009731 9.3e-18 93.2 80 61.2
Cpa.g.sc66.97 Carica papaya HOM05D007703 ORTHO05D009731 9.3e-18 93.2 77 61.0
Sed0022194 Sechium edule HOM05D007703 ORTHO05D009731 1.2e-17 92.8 77 63.6
Medtr5g061840 Medicago truncatula HOM05D007703 ORTHO05D009731 1.6e-17 92.4 76 65.8
HPP92_019111 Vanilla planifolia HOM05D007703 ORTHO05D009731 1.6e-17 92.4 75 62.7
MELO3C022803.2 Cucumis melo HOM05D007703 ORTHO05D009731 2.1e-17 92.0 76 63.2
Sc20g0003040 Simmondsia chinensis HOM05D007703 ORTHO05D009731 2.1e-17 92.0 78 64.1
Hund26653 Selenicereus undatus HOM05D007703 ORTHO05D009731 2.7e-17 91.7 84 63.1
Sp1g19640 Schrenkiella parvula HOM05D007703 ORTHO05D009731 6.1e-17 90.5 76 63.2
TAR628G1160 Trochodendron aralioides HOM05D007703 ORTHO05D009731 6.1e-17 90.5 80 66.2
vmacro21226 Vaccinium macrocarpon HOM05D007703 ORTHO05D009731 6.1e-17 90.5 81 65.4
Os03g0385301 Oryza sativa ssp. japonica HOM05D007703 ORTHO05D009731 1.0e-16 89.7 64 65.6
ECA232G3100 Erigeron canadensis HOM05D007703 ORTHO05D009731 3.0e-16 88.2 79 58.2
Thhalv10009245m.g Eutrema salsugineum HOM05D007703 ORTHO05D009731 3.0e-16 88.2 76 59.2
Zm00001eb018670 Zea mays HOM05D007703 ORTHO05D009731 3.0e-16 88.2 58 69.0
BcaC05g26138 Brassica carinata HOM05D007703 ORTHO05D009731 6.7e-16 87.0 74 60.8
C05p21240 Brassica napus HOM05D007703 ORTHO05D009731 6.7e-16 87.0 74 60.8
BolC5t30820H Brassica oleracea HOM05D007703 ORTHO05D009731 6.7e-16 87.0 74 60.8
SGA_v2.0_scaffold48G18018 Striga asiatica HOM05D007703 ORTHO05D009731 6.7e-16 87.0 101 52.5
Carub.0001s2169 Capsella rubella HOM05D007703 ORTHO05D009731 8.7e-16 86.7 56 75.0
BraA09t39737Z Brassica rapa HOM05D007703 ORTHO05D009731 1.1e-15 86.3 51 78.4
Lsat_1_v5_gn_9_44720 Lactuca sativa HOM05D007703 ORTHO05D009731 1.5e-15 85.9 77 61.0
BcaB07g32233 Brassica carinata HOM05D007703 ORTHO05D009731 2.5e-15 85.1 76 59.2
A09p42620 Brassica napus HOM05D007703 ORTHO05D009731 2.5e-15 85.1 77 59.7
CARHR022490 Cardamine hirsuta HOM05D007703 ORTHO05D009731 2.5e-15 85.1 74 59.5
AT1G22140 Arabidopsis thaliana HOM05D007703 ORTHO05D009731 3.3e-15 84.7 66 65.2
PSO133G0107 Papaver somniferum HOM05D007703 ORTHO05D009731 9.7e-15 83.2 59 67.8
Pp3c13_8980 Physcomitrium patens HOM05D007703 ORTHO05D009731 1.3e-14 82.8 77 57.1
AL1G35580 Arabidopsis lyrata HOM05D007703 ORTHO05D009731 2.2e-14 82.0 66 62.1
SEGI_17524 Sequoiadendron giganteum HOM05D007703 ORTHO05D009731 1.1e-13 79.7 81 51.9
Mapoly0023s0123 Marchantia polymorpha HOM05D007703 ORTHO05D009731 1.4e-13 79.3 59 64.4
EL10Ac1g01693 Beta vulgaris HOM05D007703 ORTHO05D009731 6.9e-13 77.0 70 55.7
ClCG03G008950 Citrullus lanatus HOM05D007703 ORTHO05D009731 4.5e-12 74.3 122 42.6
Ah.05g168540 Amaranthus hybridus HOM05D007703 ORTHO05D009731 1.3e-11 72.8 46 78.3
ATR0564G384 Amborella trichopoda HOM05D007703 ORTHO05D009731 5.0e-11 70.9 58 60.3
Haze_00567 Corylus avellana HOM05D007703 ORTHO05D009731 1.1e-10 69.7 116 40.5
CDE10G0176 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 7.2e-10 67.0 79 51.9
CSS0046153 Camellia sinensis var. sinensis HOM05D007703 ORTHO05D009731 3.6e-09 64.7 35 88.6
MBI02_g20368_MAGBIO Magnolia biondii HOM05D007703 ORTHO05D009731 1.7e-06 55.8 37 70.3


User provided reference genes

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