Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g35650 Fragaria vesca HOM05D004160 ORTHO05D004757 3.3e-97 358.6 210 100.0
FAN18G3264 Fragaria x ananassa HOM05D004160 ORTHO05D004757 1.4e-71 273.5 195 88.7
FAN13G3204 Fragaria x ananassa HOM05D004160 ORTHO05D004757 3.5e-67 258.8 195 86.2
FAN08G0272 Fragaria x ananassa HOM05D004160 ORTHO05D004757 4.6e-67 258.5 195 85.6
FAN04G0528 Fragaria x ananassa HOM05D004160 ORTHO05D004757 1.0e-66 257.3 195 85.6
RcHm_v2.0_Chr7g0237181 Rosa chinensis HOM05D004160 ORTHO05D004757 1.2e-64 250.4 198 76.8
MD15G1382900 Malus domestica HOM05D004160 ORTHO05D004757 1.7e-53 213.4 199 69.3
MD08G1195200 Malus domestica HOM05D004160 ORTHO05D004757 5.4e-52 208.4 199 69.8
Prupe.1G528700 Prunus persica HOM05D004160 ORTHO05D004757 1.0e-50 204.1 205 65.4
Cfa013695 Carpinus fangiana HOM05D004160 ORTHO05D004757 4.0e-47 192.2 208 55.8
CiPaw.07G167300 Carya illinoinensis HOM05D004160 ORTHO05D004757 1.1e-44 184.1 179 60.9
Hma1.2p1_0125F.1_g059040 Hydrangea macrophylla HOM05D004160 ORTHO05D004757 1.4e-44 183.7 195 57.4
CiPaw.08G054600 Carya illinoinensis HOM05D004160 ORTHO05D004757 5.4e-44 181.8 196 55.6
CSS0034828 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 1.2e-43 180.6 176 57.4
Potri.005G157500 Populus trichocarpa HOM05D004160 ORTHO05D004757 1.0e-42 177.6 195 51.8
Dinv44844 Davidia involucrata HOM05D004160 ORTHO05D004757 1.8e-42 176.8 183 56.3
Rhsim06G0073400 Rhododendron simsii HOM05D004160 ORTHO05D004757 1.5e-41 173.7 187 55.1
Atru.chr13.1038 Acer truncatum HOM05D004160 ORTHO05D004757 1.9e-41 173.3 198 53.0
QL09p017310 Quercus lobata HOM05D004160 ORTHO05D004757 1.9e-41 173.3 176 67.0
CSS0013226 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 2.5e-41 172.9 177 55.9
CSS0048585 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 2.5e-41 172.9 177 55.9
GSVIVG01009149001 Vitis vinifera HOM05D004160 ORTHO05D004757 2.5e-41 172.9 199 53.3
Gohir.D05G267400 Gossypium hirsutum HOM05D004160 ORTHO05D004757 4.3e-41 172.2 173 53.8
TWI36G0608 Tripterygium wilfordii HOM05D004160 ORTHO05D004757 7.4e-41 171.4 196 49.5
Gorai.009G279500 Gossypium raimondii HOM05D004160 ORTHO05D004757 1.6e-40 170.2 173 52.6
Lsat_1_v5_gn_1_1800 Lactuca sativa HOM05D004160 ORTHO05D004757 1.6e-40 170.2 177 55.4
Cc10_g15690 Coffea canephora HOM05D004160 ORTHO05D004757 2.1e-40 169.9 198 61.1
Sopen04g030060 Solanum pennellii HOM05D004160 ORTHO05D004757 2.1e-40 169.9 176 54.5
CANSAT25G1973 Cannabis sativa HOM05D004160 ORTHO05D004757 4.8e-40 168.7 195 58.5
PGSC0003DMG401012897 Solanum tuberosum HOM05D004160 ORTHO05D004757 4.8e-40 168.7 176 54.0
Duzib041G0282 Durio zibethinus HOM05D004160 ORTHO05D004757 6.2e-40 168.3 156 62.8
Solyc04g076110.4 Solanum lycopersicum HOM05D004160 ORTHO05D004757 6.2e-40 168.3 176 54.0
PGR042G0674 Punica granatum HOM05D004160 ORTHO05D004757 8.1e-40 167.9 178 60.7
Dinv42627 Davidia involucrata HOM05D004160 ORTHO05D004757 1.4e-39 167.2 195 57.9
Lalb_Chr04g0252941 Lupinus albus HOM05D004160 ORTHO05D004757 1.8e-39 166.8 175 52.6
vmacro21323 Vaccinium macrocarpon HOM05D004160 ORTHO05D004757 1.8e-39 166.8 176 55.7
Nitab4.5_0003300g0030 Nicotiana tabacum HOM05D004160 ORTHO05D004757 2.4e-39 166.4 180 62.2
Sabra05G0120500 Salix brachista HOM05D004160 ORTHO05D004757 2.4e-39 166.4 179 53.6
Gohir.D05G223500 Gossypium hirsutum HOM05D004160 ORTHO05D004757 3.1e-39 166.0 200 49.0
HanXRQChr02g0047531 Helianthus annuus HOM05D004160 ORTHO05D004757 4.0e-39 165.6 177 54.2
Actinidia10375 Actinidia chinensis HOM05D004160 ORTHO05D004757 5.3e-39 165.2 177 53.1
CAN.G1375.7 Capsicum annuum HOM05D004160 ORTHO05D004757 6.9e-39 164.9 180 53.9
Gohir.A05G265100 Gossypium hirsutum HOM05D004160 ORTHO05D004757 6.9e-39 164.9 173 52.6
Gohir.A05G220700 Gossypium hirsutum HOM05D004160 ORTHO05D004757 1.2e-38 164.1 200 50.0
Gorai.009G230600 Gossypium raimondii HOM05D004160 ORTHO05D004757 1.2e-38 164.1 184 52.2
LjContig00408g0003189 Lotus japonicus HOM05D004160 ORTHO05D004757 2.6e-38 162.9 154 59.1
Lalb_Chr10g0102681 Lupinus albus HOM05D004160 ORTHO05D004757 2.6e-38 162.9 175 54.3
Phvul.008G180400 Phaseolus vulgaris HOM05D004160 ORTHO05D004757 2.6e-38 162.9 175 60.0
Manes.02G146200 Manihot esculenta HOM05D004160 ORTHO05D004757 3.4e-38 162.5 206 50.5
Peaxi162Scf00281g00317 Petunia axillaris HOM05D004160 ORTHO05D004757 3.4e-38 162.5 174 55.7
Eucgr.F02134 Eucalyptus grandis HOM05D004160 ORTHO05D004757 4.5e-38 162.2 183 49.2
Thecc.08G068800 Theobroma cacao HOM05D004160 ORTHO05D004757 4.5e-38 162.2 173 56.6
Eucgr.F00408 Eucalyptus grandis HOM05D004160 ORTHO05D004757 5.8e-38 161.8 173 61.3
Glyma.04G092300 Glycine max HOM05D004160 ORTHO05D004757 5.8e-38 161.8 158 57.6
Lj4C734G12 Lonicera japonica HOM05D004160 ORTHO05D004757 5.8e-38 161.8 178 53.4
TPR.G16029 Trifolium pratense HOM05D004160 ORTHO05D004757 5.8e-38 161.8 174 55.2
Potri.002G104200 Populus trichocarpa HOM05D004160 ORTHO05D004757 1.0e-37 161.0 206 48.5
TWI56G0453 Tripterygium wilfordii HOM05D004160 ORTHO05D004757 1.0e-37 161.0 180 50.6
Psat2g066520 Pisum sativum HOM05D004160 ORTHO05D004757 1.3e-37 160.6 174 53.4
DCAR_019307 Daucus carota HOM05D004160 ORTHO05D004757 1.7e-37 160.2 157 58.0
arahy.Tifrunner.gnm1.ann1.IX6BVV Arachis hypogaea HOM05D004160 ORTHO05D004757 2.9e-37 159.5 196 49.5
arahy.Tifrunner.gnm1.ann1.RJ93MJ Arachis hypogaea HOM05D004160 ORTHO05D004757 2.9e-37 159.5 158 56.3
Cpa.g.sc309.1 Carica papaya HOM05D004160 ORTHO05D004757 4.9e-37 158.7 198 48.5
arahy.Tifrunner.gnm1.ann1.GVS2KG Arachis hypogaea HOM05D004160 ORTHO05D004757 6.5e-37 158.3 158 55.7
arahy.Tifrunner.gnm1.ann1.BVU39Z Arachis hypogaea HOM05D004160 ORTHO05D004757 8.4e-37 157.9 196 49.0
Actinidia29615 Actinidia chinensis HOM05D004160 ORTHO05D004757 1.1e-36 157.5 175 50.3
Medtr5g065930 Medicago truncatula HOM05D004160 ORTHO05D004757 2.5e-36 156.4 174 57.5
MELO3C011103.2 Cucumis melo HOM05D004160 ORTHO05D004757 3.2e-36 156.0 154 63.6
Glyma.06G094100 Glycine max HOM05D004160 ORTHO05D004757 3.2e-36 156.0 158 69.0
Sabra02G0081700 Salix brachista HOM05D004160 ORTHO05D004757 4.2e-36 155.6 190 53.2
Sed0023007 Sechium edule HOM05D004160 ORTHO05D004757 5.5e-36 155.2 171 55.6
ECA247G3853 Erigeron canadensis HOM05D004160 ORTHO05D004757 9.3e-36 154.5 158 55.7
Sed0000869 Sechium edule HOM05D004160 ORTHO05D004757 9.3e-36 154.5 197 50.8
vmacro04668 Vaccinium macrocarpon HOM05D004160 ORTHO05D004757 1.2e-35 154.1 193 47.7
Manes.18G060500 Manihot esculenta HOM05D004160 ORTHO05D004757 1.6e-35 153.7 188 52.1
Aa31sc399G20 Aethionema arabicum HOM05D004160 ORTHO05D004757 2.7e-35 152.9 199 46.2
CsaV3_2G030410 Cucumis sativus L. HOM05D004160 ORTHO05D004757 3.5e-35 152.5 171 63.2
AT5G49710 Arabidopsis thaliana HOM05D004160 ORTHO05D004757 4.6e-35 152.1 173 49.7
Ca_05405_v3 Cicer arietinum L. HOM05D004160 ORTHO05D004757 4.6e-35 152.1 174 52.3
VMungo1309G1362 Vigna mungo HOM05D004160 ORTHO05D004757 7.9e-35 151.4 158 53.2
Phvul.009G143600 Phaseolus vulgaris HOM05D004160 ORTHO05D004757 1.8e-34 150.2 158 67.1
COL.COLO4_35202 Corchorus olitorius HOM05D004160 ORTHO05D004757 3.0e-34 149.4 199 51.8
TAR381G1705 Trochodendron aralioides HOM05D004160 ORTHO05D004757 3.0e-34 149.4 199 55.3
THA.LOC104799806 Tarenaya hassleriana HOM05D004160 ORTHO05D004757 3.9e-34 149.1 199 45.2
AL8G23640 Arabidopsis lyrata HOM05D004160 ORTHO05D004757 6.7e-34 148.3 172 48.8
Ciclev10002321m.g Citrus clementina HOM05D004160 ORTHO05D004757 1.5e-33 147.1 166 50.0
AUR62027862 Chenopodium quinoa HOM05D004160 ORTHO05D004757 1.9e-33 146.7 166 50.0
Hund27011 Selenicereus undatus HOM05D004160 ORTHO05D004757 1.9e-33 146.7 164 61.6
Duzib093G1656 Durio zibethinus HOM05D004160 ORTHO05D004757 2.5e-33 146.4 177 52.0
VMungo0647G1165 Vigna mungo HOM05D004160 ORTHO05D004757 3.3e-33 146.0 177 59.3
Rhsim07G0210500 Rhododendron simsii HOM05D004160 ORTHO05D004757 4.3e-33 145.6 195 44.1
Sc01g0001090 Simmondsia chinensis HOM05D004160 ORTHO05D004757 4.3e-33 145.6 175 58.3
AUR62019025 Chenopodium quinoa HOM05D004160 ORTHO05D004757 5.7e-33 145.2 166 49.4
TAR381G1580 Trochodendron aralioides HOM05D004160 ORTHO05D004757 5.7e-33 145.2 200 55.5
EL10Ac1g01077 Beta vulgaris HOM05D004160 ORTHO05D004757 2.1e-32 143.3 168 57.7
TAR625G1241 Trochodendron aralioides HOM05D004160 ORTHO05D004757 2.1e-32 143.3 196 54.1
Hma1.2p1_0010F.1_g006920 Hydrangea macrophylla HOM05D004160 ORTHO05D004757 2.8e-32 142.9 179 46.9
Aqoxy6G01454 Aquilegia oxysepala HOM05D004160 ORTHO05D004757 3.7e-32 142.5 172 64.0
Migut.K00588 Erythranthe guttata HOM05D004160 ORTHO05D004757 3.7e-32 142.5 154 55.2
Nn5g29924 Nelumbo nucifera HOM05D004160 ORTHO05D004757 3.7e-32 142.5 199 48.7
Nitab4.5_0000131g0400 Nicotiana tabacum HOM05D004160 ORTHO05D004757 6.2e-32 141.7 111 64.0
DCAR_012861 Daucus carota HOM05D004160 ORTHO05D004757 8.2e-32 141.4 175 50.3
THA.LOC104800042 Tarenaya hassleriana HOM05D004160 ORTHO05D004757 1.4e-31 140.6 180 47.8
Aqoxy5G01323 Aquilegia oxysepala HOM05D004160 ORTHO05D004757 2.4e-31 139.8 184 47.3
SGA_v2.0_scaffold107G30821 Striga asiatica HOM05D004160 ORTHO05D004757 2.4e-31 139.8 154 51.3
Haze_22335 Corylus avellana HOM05D004160 ORTHO05D004757 3.1e-31 139.4 196 45.4
CARHR231990 Cardamine hirsuta HOM05D004160 ORTHO05D004757 9.0e-31 137.9 178 53.9
Oeu011647.1 Olea europaea HOM05D004160 ORTHO05D004757 2.0e-30 136.7 153 49.0
Zm00001eb257060 Zea mays HOM05D004160 ORTHO05D004757 2.0e-30 136.7 197 55.8
ATR0022G063 Amborella trichopoda HOM05D004160 ORTHO05D004757 3.4e-30 136.0 162 50.0
Carub.0008s0959 Capsella rubella HOM05D004160 ORTHO05D004757 3.4e-30 136.0 174 46.0
CDE08G0105 Ceratophyllum demersum HOM05D004160 ORTHO05D004757 3.4e-30 136.0 180 46.7
Thhalv10026080m.g Eutrema salsugineum HOM05D004160 ORTHO05D004757 5.8e-30 135.2 180 46.1
Ah.05g170710 Amaranthus hybridus HOM05D004160 ORTHO05D004757 1.0e-29 134.4 188 43.1
SalBow1G6265 Salvia bowleyana HOM05D004160 ORTHO05D004757 1.3e-29 134.0 158 47.5
ClCG08G011790 Citrullus lanatus HOM05D004160 ORTHO05D004757 1.7e-29 133.7 186 53.8
PSO017G5904 Papaver somniferum HOM05D004160 ORTHO05D004757 2.2e-29 133.3 176 45.5
MBI06_g36045_MAGBIO Magnolia biondii HOM05D004160 ORTHO05D004757 5.0e-29 132.1 172 48.3
AT4G24590 Arabidopsis thaliana HOM05D004160 ORTHO05D004757 1.1e-28 131.0 178 50.6
CDE06G1108 Ceratophyllum demersum HOM05D004160 ORTHO05D004757 1.1e-28 131.0 189 45.5
HPP92_002309 Vanilla planifolia HOM05D004160 ORTHO05D004757 1.4e-28 130.6 158 46.2
AL7G28600 Arabidopsis lyrata HOM05D004160 ORTHO05D004757 1.9e-28 130.2 178 54.5
Carub.0007s1648 Capsella rubella HOM05D004160 ORTHO05D004757 2.5e-28 129.8 179 52.0
Sp7g22590 Schrenkiella parvula HOM05D004160 ORTHO05D004757 4.2e-28 129.0 182 43.4
BcaC06g32873 Brassica carinata HOM05D004160 ORTHO05D004757 9.3e-28 127.9 179 44.7
BraA03t14616Z Brassica rapa HOM05D004160 ORTHO05D004757 9.3e-28 127.9 179 44.7
C07p53710 Brassica napus HOM05D004160 ORTHO05D004757 2.7e-27 126.3 179 44.1
BolC7t45862H Brassica oleracea HOM05D004160 ORTHO05D004757 2.7e-27 126.3 191 46.6
unitig_85.g27260 Utricularia gibba HOM05D004160 ORTHO05D004757 7.9e-27 124.8 159 48.4
A03p55420 Brassica napus HOM05D004160 ORTHO05D004757 2.3e-26 123.2 180 53.9
BcaNung04961 Brassica carinata HOM05D004160 ORTHO05D004757 8.7e-26 121.3 185 42.7
BcaC09g50849 Brassica carinata HOM05D004160 ORTHO05D004757 1.1e-25 120.9 186 44.6
Hund16867 Selenicereus undatus HOM05D004160 ORTHO05D004757 1.9e-25 120.2 178 41.0
C01p19930 Brassica napus HOM05D004160 ORTHO05D004757 4.3e-25 119.0 185 44.3
BolC1t01921H Brassica oleracea HOM05D004160 ORTHO05D004757 9.7e-25 117.9 188 43.6
Os02g0781700 Oryza sativa ssp. japonica HOM05D004160 ORTHO05D004757 9.7e-25 117.9 198 39.9
Migut.H00368 Erythranthe guttata HOM05D004160 ORTHO05D004757 1.3e-24 117.5 172 40.7
MSTRG.23691 Avicennia marina HOM05D004160 ORTHO05D004757 1.8e-23 113.6 174 38.5
A01p15950 Brassica napus HOM05D004160 ORTHO05D004757 2.4e-23 113.2 184 43.5
MBI02_g09036_MAGBIO Magnolia biondii HOM05D004160 ORTHO05D004757 3.1e-23 112.8 237 36.3
SEGI_35412 Sequoiadendron giganteum HOM05D004160 ORTHO05D004757 4.1e-23 112.5 181 40.3
BraA01t01529Z Brassica rapa HOM05D004160 ORTHO05D004757 2.0e-22 110.2 194 41.2
PSO541G4918 Papaver somniferum HOM05D004160 ORTHO05D004757 2.0e-22 110.2 185 37.8
BraA08t34092Z Brassica rapa HOM05D004160 ORTHO05D004757 1.4e-20 104.0 155 43.9
Aa31LG4G9680 Aethionema arabicum HOM05D004160 ORTHO05D004757 2.5e-20 103.2 166 41.0
BcaB03g12437 Brassica carinata HOM05D004160 ORTHO05D004757 2.5e-20 103.2 182 38.5
Oeu012754.1 Olea europaea HOM05D004160 ORTHO05D004757 9.4e-20 101.3 184 38.6
PSO675G9245 Papaver somniferum HOM05D004160 ORTHO05D004757 9.4e-20 101.3 178 36.5
SGA_v2.0_scaffold15G07419 Striga asiatica HOM05D004160 ORTHO05D004757 2.7e-19 99.8 156 46.8
A08p21430 Brassica napus HOM05D004160 ORTHO05D004757 3.0e-18 96.3 158 41.8
CARHR259070 Cardamine hirsuta HOM05D004160 ORTHO05D004757 1.3e-16 90.9 102 50.0
Zm00001eb101080 Zea mays HOM05D004160 ORTHO05D004757 8.2e-16 88.2 158 38.0
Zm00001eb315410 Zea mays HOM05D004160 ORTHO05D004757 1.4e-15 87.4 92 54.3
BcaC07g38165 Brassica carinata HOM05D004160 ORTHO05D004757 9.1e-15 84.7 164 39.0
Os09g0465500 Oryza sativa ssp. japonica HOM05D004160 ORTHO05D004757 2.0e-14 83.6 200 43.0
BolC8t48579H Brassica oleracea HOM05D004160 ORTHO05D004757 7.7e-14 81.6 153 37.3
SHI28776 Sapria himalayana HOM05D004160 ORTHO05D004757 1.8e-10 70.5 56 58.9
Mapoly0023s0096 Marchantia polymorpha HOM05D004160 ORTHO05D004757 3.0e-10 69.7 113 38.1
Mapoly0023s0095 Marchantia polymorpha HOM05D004967 ORTHO05D004757 2.2e-08 63.5 110 36.4
AagrBONN_evm.TU.Sc2ySwM_344.3696 Anthoceros agrestis HOM05D004160 ORTHO05D004757 1.5e-06 57.4 98 38.8


User provided reference genes

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