Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g35071 Fragaria vesca HOM05D002804 ORTHO05D025537 3.4e-36 154.5 77 100.0
RcHm_v2.0_Chr0c11g0499331 Rosa chinensis HOM05D002804 ORTHO05D025537 9.0e-29 129.8 75 85.3
RcHm_v2.0_Chr0c11g0499551 Rosa chinensis HOM05D002804 ORTHO05D025537 9.0e-29 129.8 75 85.3
RcHm_v2.0_Chr7g0236111 Rosa chinensis HOM05D002804 ORTHO05D025537 9.0e-29 129.8 75 85.3
RcHm_v2.0_Chr7g0236621 Rosa chinensis HOM05D002804 ORTHO05D003755 2.0e-28 128.6 75 82.7
RcHm_v2.0_Chr7g0236071 Rosa chinensis HOM05D002804 ORTHO05D003755 2.7e-25 118.2 75 77.3
RcHm_v2.0_Chr7g0235811 Rosa chinensis HOM05D002804 ORTHO05D003755 7.9e-25 116.7 77 76.6
RcHm_v2.0_Chr7g0236171 Rosa chinensis HOM05D002804 ORTHO05D003755 5.1e-24 114.0 75 74.7
RcHm_v2.0_Chr7g0236201 Rosa chinensis HOM05D002804 ORTHO05D003755 2.5e-23 111.7 75 73.3
FAN04G2366 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.7e-23 110.5 75 72.0
FAN08G1735 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.3e-22 107.1 77 70.1
RcHm_v2.0_Chr1g0342791 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-21 106.3 75 70.7
RcHm_v2.0_Chr7g0236591 Rosa chinensis HOM05D002804 ORTHO05D003755 4.1e-21 104.4 75 70.7
FvH4_5g31002 Fragaria vesca HOM05D002804 ORTHO05D003755 5.3e-21 104.0 75 68.0
FAN13G1711 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.2e-19 98.6 75 66.7
FvH4_7g08991 Fragaria vesca HOM05D002804 ORTHO05D003755 8.5e-19 96.7 75 60.0
FAN06G4842 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.5e-19 96.7 75 60.0
RcHm_v2.0_Chr0c11g0499471 Rosa chinensis HOM05D002804 ORTHO05D003755 4.2e-18 94.4 75 64.0
FvH4_5g35322 Fragaria vesca HOM05D002804 ORTHO05D003755 1.2e-17 92.8 75 62.7
FAN18G0864 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.0e-16 89.7 70 60.0
FAN08G2676 Fragaria x ananassa HOM05D002804 ORTHO05D025426 1.8e-16 89.0 75 62.7
FAN15G3641 Fragaria x ananassa HOM05D002804 ORTHO05D010609 1.8e-16 89.0 68 66.2
RcHm_v2.0_Chr0c11g0499511 Rosa chinensis HOM05D002804 ORTHO05D003755 3.0e-16 88.2 75 62.7
RcHm_v2.0_Chr7g0193131 Rosa chinensis HOM05D002804 ORTHO05D003755 3.0e-16 88.2 71 59.2
FAN08G1215 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.7e-16 87.0 70 58.6
RcHm_v2.0_Chr0c11g0499461 Rosa chinensis HOM05D002804 ORTHO05D003755 6.7e-16 87.0 75 60.0
FAN04G1488 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.7e-16 86.7 70 58.6
FAN12G4232 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.5e-15 85.9 77 53.2
RcHm_v2.0_Chr7g0236231 Rosa chinensis HOM05D002804 ORTHO05D003755 1.9e-15 85.5 75 58.7
FvH4_4g16590 Fragaria vesca HOM05D002804 ORTHO05D003755 2.5e-15 85.1 77 53.2
RcHm_v2.0_Chr0c11g0499391 Rosa chinensis HOM05D002804 ORTHO05D003755 5.7e-15 84.0 56 73.2
FvH4_5g34900 Fragaria vesca HOM05D002804 ORTHO05D025426 7.4e-15 83.6 75 57.3
RcHm_v2.0_Chr7g0218371 Rosa chinensis HOM05D002804 ORTHO05D003755 9.7e-15 83.2 62 66.1
FAN04G0322 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.6e-14 82.4 74 59.5
RcHm_v2.0_Chr0c11g0499481 Rosa chinensis HOM05D002804 ORTHO05D003755 3.7e-14 81.3 75 57.3
RcHm_v2.0_Chr7g0236241 Rosa chinensis HOM05D002804 ORTHO05D003755 3.7e-14 81.3 75 57.3
FAN25G3079 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.8e-14 80.9 60 66.7
FvH4_5g35320 Fragaria vesca HOM05D002804 ORTHO05D003755 6.3e-14 80.5 75 57.3
RcHm_v2.0_Chr7g0236331 Rosa chinensis HOM05D002804 ORTHO05D003755 8.2e-14 80.1 111 42.3
FvH4_5g35300 Fragaria vesca HOM05D002804 ORTHO05D003755 1.1e-13 79.7 113 42.5
FAN18G4551 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-13 79.7 113 42.5
FAN08G3046 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.1e-13 78.2 89 49.4
FAN04G3225 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.1e-13 77.8 56 67.9
FvH4_5g31080 Fragaria vesca HOM05D002804 ORTHO05D003755 6.9e-13 77.0 59 66.1
FAN13G2866 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.5e-12 75.9 77 51.9
RcHm_v2.0_Chr7g0235981 Rosa chinensis HOM05D002804 ORTHO05D003755 1.5e-12 75.9 56 67.9
FAN18G1608 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.6e-12 75.1 54 68.5
FvH4_5g35253 Fragaria vesca HOM05D002804 ORTHO05D003755 3.4e-12 74.7 60 61.7
FAN08G3255 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.9e-12 73.9 74 52.7
RcHm_v2.0_Chr7g0235851 Rosa chinensis HOM05D002804 ORTHO05D003755 1.3e-11 72.8 52 71.2
FvH4_5g35060 Fragaria vesca HOM05D002804 ORTHO05D003755 1.7e-11 72.4 52 69.2
FAN10G1430 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.2e-11 72.0 58 58.6
FAN10G1692 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.2e-11 72.0 58 58.6
RcHm_v2.0_Chr7g0236031 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-10 69.7 113 39.8
FvH4_5g05670 Fragaria vesca HOM05D002804 ORTHO05D003755 1.4e-10 69.3 56 57.1
FAN03G3123 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.4e-10 69.3 57 56.1
FvH4_5g35000 Fragaria vesca HOM05D002804 ORTHO05D003755 2.5e-10 68.6 113 37.2
FAN18G3590 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.5e-10 68.6 59 61.0
RcHm_v2.0_Chr7g0235841 Rosa chinensis HOM05D002804 ORTHO05D025426 2.5e-10 68.6 56 62.5
FAN13G0623 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.2e-10 67.8 52 57.7
FAN18G3994 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.2e-10 67.8 113 37.2
FvH4_7g09010 Fragaria vesca HOM05D002804 ORTHO05D003755 9.4e-10 66.6 47 66.0
FAN06G4567 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.4e-10 66.6 47 66.0
RcHm_v2.0_Chr7g0218341 Rosa chinensis HOM05D002804 ORTHO05D003755 9.4e-10 66.6 49 61.2
RcHm_v2.0_Chr3g0459161 Rosa chinensis HOM05D002804 ORTHO05D003755 3.6e-09 64.7 73 45.2
RcHm_v2.0_Chr7g0235941 Rosa chinensis HOM05D002804 ORTHO05D003755 3.6e-09 64.7 57 54.4
FvH4_6g08870 Fragaria vesca HOM05D002804 ORTHO05D003755 7.9e-09 63.5 73 43.8
FAN03G0432 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.9e-09 63.5 45 66.7
MD16G1193600 Malus domestica HOM05D002804 ORTHO05D003755 1.4e-08 62.8 73 45.2
FAN14G5607 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.3e-08 62.0 73 45.2
FAN18G3729 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.0e-08 61.6 59 55.9
FAN02G0182 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.8e-08 60.1 70 42.9
FAN05G2457 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.8e-08 60.1 73 41.1
FAN10G0048 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.8e-08 60.1 45 62.2
MD16G1177800 Malus domestica HOM05D002804 ORTHO05D003755 8.8e-08 60.1 73 42.5
FAN10G1037 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.0e-07 58.9 45 62.2
FAN02G1490 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.6e-07 58.5 113 36.3
RcHm_v2.0_Chr3g0459181 Rosa chinensis HOM05D002804 ORTHO05D003755 5.7e-07 57.4 74 41.9
FAN05G0512 Fragaria x ananassa HOM05D002804 ORTHO05D025537 1.3e-06 56.2 73 43.8
FAN14G4263 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.3e-06 56.2 69 43.5
FAN21G0703 Fragaria x ananassa HOM05D002804 ORTHO05D200337 1.7e-06 55.8 47 55.3
FvH4_5g32070 Fragaria vesca HOM05D002804 ORTHO05D003755 2.2e-06 55.5 54 53.7
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 3.7e-06 54.7 73 41.1
FvH4_5g35050 Fragaria vesca HOM05D002804 ORTHO05D003755 4.8e-06 54.3 113 33.6
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.8e-06 54.3 38 60.5
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.8e-06 54.3 38 60.5
FAN18G4091 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.8e-06 54.3 47 57.4
FAN18G3080 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.3e-06 53.9 36 66.7
RcHm_v2.0_Chr0c11g0499501 Rosa chinensis HOM05D002804 ORTHO05D003755 6.3e-06 53.9 111 35.1


User provided reference genes

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