Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g34871 Fragaria vesca HOM05D012422 ORTHO05D012874 3.6e-91 338.2 165 100.0
FvH4_3g37001 Fragaria vesca HOM05D000003 ORTHO05D000006 7.3e-36 154.5 163 48.5
FvH4_2g12622 Fragaria vesca HOM05D012422 ORTHO05D012874 4.7e-35 151.8 205 41.5
FvH4_5g28071 Fragaria vesca HOM05D002778 ORTHO05D012874 3.8e-24 115.5 162 42.6
RcHm_v2.0_Chr4g0389021 Rosa chinensis HOM05D000003 ORTHO05D000167 8.4e-24 114.4 181 39.8
FvH4_6g33631 Fragaria vesca HOM05D000003 ORTHO05D004145 1.1e-18 97.4 177 39.5
FvH4_6g22181 Fragaria vesca HOM05D012422 ORTHO05D012874 3.1e-18 95.9 96 47.9
FAN14G3980 Fragaria x ananassa HOM05D012422 ORTHO05D012874 3.1e-18 95.9 96 47.9
FAN03G0239 Fragaria x ananassa HOM05D002778 ORTHO05D012874 1.5e-17 93.6 120 45.0
FvH4_6g21812 Fragaria vesca HOM05D012422 ORTHO05D000167 3.4e-17 92.4 78 53.8
FvH4_3g18961 Fragaria vesca HOM05D000003 ORTHO05D000004 7.1e-15 84.7 138 36.2
FvH4_2g13902 Fragaria vesca HOM05D012422 ORTHO05D012874 9.3e-15 84.3 156 35.3
FAN11G3261 Fragaria x ananassa HOM05D012422 ORTHO05D012874 1.2e-14 84.0 69 60.9
FvH4_4g09551 Fragaria vesca HOM05D000003 ORTHO05D000004 8.7e-13 77.8 59 59.3
RcHm_v2.0_Chr5g0072911 Rosa chinensis HOM05D000003 ORTHO05D011656 1.9e-12 76.6 94 40.4
FAN25G0905 Fragaria x ananassa HOM05D012422 ORTHO05D012874 3.3e-12 75.9 186 30.6
FvH4_3g32231 Fragaria vesca HOM05D038853 ORTHO05D012874 9.6e-12 74.3 70 52.9
FvH4_2g12641 Fragaria vesca HOM05D000003 ORTHO05D000022 6.2e-11 71.6 106 38.7
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 1.2e-09 67.4 123 38.2
FvH4_3g25262 Fragaria vesca HOM05D000003 ORTHO05D000004 1.2e-09 67.4 142 33.1
RcHm_v2.0_Chr5g0020651 Rosa chinensis HOM05D012422 ORTHO05D012874 2.6e-09 66.2 73 46.6
FvH4_1g26290 Fragaria vesca HOM05D000003 ORTHO05D010713 3.4e-09 65.9 116 32.8
Atru.chr13.1676 Acer truncatum HOM05D000003 ORTHO05D000006 5.8e-09 65.1 84 46.4
FvH4_6g12311 Fragaria vesca HOM05D000003 ORTHO05D000004 1.0e-08 64.3 170 28.8
Prupe.6G141500 Prunus persica HOM05D000003 ORTHO05D000167 1.0e-08 64.3 126 33.3
Atru.chr13.1037 Acer truncatum HOM05D000003 ORTHO05D000167 1.7e-08 63.5 84 45.2
Atru.chr10.527 Acer truncatum HOM05D000003 ORTHO05D000004 2.2e-08 63.2 167 31.7
FAN16G3309 Fragaria x ananassa HOM05D012422 ORTHO05D012874 2.2e-08 63.2 80 41.2
QL09p016348 Quercus lobata HOM05D000155 ORTHO05D000022 2.2e-08 63.2 94 36.2
Atru.chr9.887 Acer truncatum HOM05D000003 ORTHO05D000006 2.9e-08 62.8 84 45.2
RcHm_v2.0_Chr7g0206951 Rosa chinensis HOM05D013659 ORTHO05D012679 2.9e-08 62.8 142 29.6
FvH4_4g14101 Fragaria vesca HOM05D000003 ORTHO05D000006 3.8e-08 62.4 146 29.5
RcHm_v2.0_Chr7g0226691 Rosa chinensis HOM05D009383 ORTHO05D011656 4.9e-08 62.0 94 37.2
Atru.chr12.1060 Acer truncatum HOM05D000003 ORTHO05D000167 6.5e-08 61.6 93 39.8
RcHm_v2.0_Chr0c22g0500391 Rosa chinensis HOM05D008833 ORTHO05D000167 6.5e-08 61.6 86 38.4
Cc04_g14660 Coffea canephora HOM05D000003 ORTHO05D000167 1.1e-07 60.8 93 38.7
FvH4_6g29902 Fragaria vesca HOM05D013134 ORTHO05D012679 1.4e-07 60.5 121 36.4
FvH4_3g28461 Fragaria vesca HOM05D000003 ORTHO05D014631 1.9e-07 60.1 94 37.2
RcHm_v2.0_Chr1g0314431 Rosa chinensis HOM05D000003 ORTHO05D006737 1.9e-07 60.1 94 36.2
RcHm_v2.0_Chr5g0047711 Rosa chinensis HOM05D008833 ORTHO05D000167 2.5e-07 59.7 92 38.0
Atru.chr13.1628 Acer truncatum HOM05D000003 ORTHO05D000167 5.5e-07 58.5 89 39.3
Prupe.4G283800 Prunus persica HOM05D005989 ORTHO05D000651 5.5e-07 58.5 99 36.4
FvH4_4g01552 Fragaria vesca HOM05D000003 ORTHO05D006737 7.1e-07 58.2 86 34.9
Nitab4.5_0000411g0070 Nicotiana tabacum HOM05D000003 ORTHO05D004636 9.3e-07 57.8 84 41.7
Nitab4.5_0004734g0040 Nicotiana tabacum HOM05D000003 ORTHO05D000022 9.3e-07 57.8 84 36.9
FvH4_2g00211 Fragaria vesca HOM05D000003 ORTHO05D006737 1.2e-06 57.4 202 24.8
FvH4_5g25501 Fragaria vesca HOM05D013134 ORTHO05D012679 1.6e-06 57.0 83 37.3
FAN12G0535 Fragaria x ananassa HOM05D008833 ORTHO05D000167 1.6e-06 57.0 179 26.8
Os01g0930300 Oryza sativa ssp. japonica HOM05D000003 ORTHO05D000167 1.6e-06 57.0 87 33.3
PSO541G4138 Papaver somniferum HOM05D000003 ORTHO05D001026 1.6e-06 57.0 170 26.5
RcHm_v2.0_Chr3g0481921 Rosa chinensis HOM05D000003 ORTHO05D000004 1.6e-06 57.0 178 26.4
SHI53806 Sapria himalayana HOM05D004990 ORTHO05D000022 1.6e-06 57.0 92 34.8
FvH4_3g30681 Fragaria vesca HOM05D000003 ORTHO05D000006 2.1e-06 56.6 176 25.6
FvH4_4g20982 Fragaria vesca HOM05D000003 ORTHO05D006737 2.1e-06 56.6 205 25.9
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 2.1e-06 56.6 202 24.8
Nitab4.5_0002611g0080 Nicotiana tabacum HOM05D000003 ORTHO05D000022 2.1e-06 56.6 87 37.9
FvH4_4g16971 Fragaria vesca HOM05D000003 ORTHO05D000004 3.5e-06 55.8 213 23.5
SHI41809 Sapria himalayana HOM05D000003 ORTHO05D000004 3.5e-06 55.8 86 38.4
FvH4_6g09141 Fragaria vesca HOM05D012422 ORTHO05D012874 4.6e-06 55.5 45 57.8
MBI04_g29847_MAGBIO Magnolia biondii HOM05D000413 ORTHO05D000292 4.6e-06 55.5 90 36.7
EL10Ac4g08331 Beta vulgaris HOM05D008685 ORTHO05D000022 6.0e-06 55.1 86 40.7
RcHm_v2.0_Chr7g0236061 Rosa chinensis HOM05D000003 ORTHO05D000004 6.0e-06 55.1 213 25.8
FvH4_3g24361 Fragaria vesca HOM05D012422 ORTHO05D016247 7.9e-06 54.7 91 37.4
Gorai.001G187600 Gossypium raimondii HOM05D016941 ORTHO05D019244 7.9e-06 54.7 112 34.8


User provided reference genes

Program Settings