Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g34311 Fragaria vesca HOM05D005726 ORTHO05D001733 4.5e-38 160.6 72 100.0
FAN04G1699 Fragaria x ananassa HOM05D005726 ORTHO05D001733 2.2e-16 88.6 42 95.2
RcHm_v2.0_Chr6g0245271 Rosa chinensis HOM05D005726 ORTHO05D001733 4.8e-16 87.4 42 92.9
MD05G1115600 Malus domestica HOM05D005726 ORTHO05D001733 2.4e-15 85.1 38 94.7
CiPaw.05G077000 Carya illinoinensis HOM05D005726 ORTHO05D001733 2.6e-14 81.6 42 85.7
Cfa005182 Carpinus fangiana HOM05D005726 ORTHO05D001733 1.0e-13 79.7 42 83.3
Haze_02200 Corylus avellana HOM05D005726 ORTHO05D001733 1.0e-13 79.7 42 83.3
QL11p047517 Quercus lobata HOM05D005726 ORTHO05D001733 2.2e-13 78.6 38 86.8
Prupe.8G160400 Prunus persica HOM05D005726 ORTHO05D001733 2.9e-13 78.2 39 92.3
Cpa.g.sc37.193 Carica papaya HOM05D005726 ORTHO05D001733 3.8e-13 77.8 42 76.2
Duzib132G0889 Durio zibethinus HOM05D005726 ORTHO05D001733 6.5e-13 77.0 50 68.0
Sabra09G0098800 Salix brachista HOM05D005726 ORTHO05D001733 6.5e-13 77.0 38 84.2
COL.COLO4_17253 Corchorus olitorius HOM05D005726 ORTHO05D001733 8.5e-13 76.6 42 78.6
Potri.009G129301 Populus trichocarpa HOM05D005726 ORTHO05D001733 1.1e-12 76.3 38 81.6
Atru.chr5.3224 Acer truncatum HOM05D005726 ORTHO05D001733 4.2e-12 74.3 50 66.0
Potri.004G167800 Populus trichocarpa HOM05D005726 ORTHO05D001733 7.2e-12 73.6 38 78.9
Thecc.02G067200 Theobroma cacao HOM05D005726 ORTHO05D001733 9.4e-12 73.2 42 73.8
Ciclev10029854m.g Citrus clementina HOM05D005726 ORTHO05D001733 1.2e-11 72.8 52 65.4
Gohir.D12G033000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.2e-11 72.8 42 73.8
Gorai.008G033800 Gossypium raimondii HOM05D005726 ORTHO05D001733 1.2e-11 72.8 42 73.8
Nn1g05896 Nelumbo nucifera HOM05D005726 ORTHO05D001733 1.2e-11 72.8 38 86.8
Ciclev10029543m.g Citrus clementina HOM05D005726 ORTHO05D001733 1.6e-11 72.4 52 65.4
MD10G1118100 Malus domestica HOM05D005726 ORTHO05D001733 2.1e-11 72.0 38 84.2
Gohir.A12G039400 Gossypium hirsutum HOM05D005726 ORTHO05D001733 2.7e-11 71.6 42 71.4
ClCG02G011420 Citrullus lanatus HOM05D005726 ORTHO05D001733 3.6e-11 71.2 42 71.4
Sed0014638 Sechium edule HOM05D005726 ORTHO05D001733 4.6e-11 70.9 50 62.0
Actinidia00594 Actinidia chinensis HOM05D005726 ORTHO05D001733 6.1e-11 70.5 38 78.9
PGR042G3858 Punica granatum HOM05D005726 ORTHO05D001733 1.8e-10 68.9 38 73.7
Nn5g30142 Nelumbo nucifera HOM05D005726 ORTHO05D001733 2.3e-10 68.6 46 69.6
TAR376G0138 Trochodendron aralioides HOM05D005726 ORTHO05D001733 3.0e-10 68.2 50 60.0
DCAR_003698 Daucus carota HOM05D005726 ORTHO05D001733 5.1e-10 67.4 38 73.7
Migut.N01283 Erythranthe guttata HOM05D005726 ORTHO05D001733 6.7e-10 67.0 47 61.7
MBI05_g33718_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 2.0e-09 65.5 38 73.7
MBI05_g46327_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 2.0e-09 65.5 38 73.7
Sed0019554 Sechium edule HOM05D005726 ORTHO05D001733 2.0e-09 65.5 38 71.1
TWI56G0219 Tripterygium wilfordii HOM05D005726 ORTHO05D001733 5.7e-09 63.9 59 54.2
CiPaw.07G149600 Carya illinoinensis HOM05D005726 ORTHO05D001733 7.4e-09 63.5 58 53.4
Haze_22635 Corylus avellana HOM05D005726 ORTHO05D001733 7.4e-09 63.5 58 56.9
PSO170G6562 Papaver somniferum HOM05D005726 ORTHO05D001733 9.7e-09 63.2 38 71.1
Cc02_g16550 Coffea canephora HOM05D005726 ORTHO05D001733 1.3e-08 62.8 38 73.7
TPR.G38487 Trifolium pratense HOM05D005726 ORTHO05D001733 1.7e-08 62.4 38 63.2
TAR625G1501 Trochodendron aralioides HOM05D005726 ORTHO05D001733 2.2e-08 62.0 38 68.4
Cfa013952 Carpinus fangiana HOM05D005726 ORTHO05D001733 6.3e-08 60.5 47 63.8
CsaV3_2G015680 Cucumis sativus L. HOM05D005726 ORTHO05D001733 1.1e-07 59.7 44 65.9
Phvul.009G017000 Phaseolus vulgaris HOM05D005726 ORTHO05D001733 1.4e-07 59.3 42 64.3
Manes.05G147300 Manihot esculenta HOM05D005726 ORTHO05D001733 3.1e-07 58.2 42 61.9
MELO3C020779.2 Cucumis melo HOM05D005726 ORTHO05D001733 4.1e-07 57.8 44 61.4
QL02p011637 Quercus lobata HOM05D005726 ORTHO05D001733 4.1e-07 57.8 53 56.6
THA.LOC104821582 Tarenaya hassleriana HOM05D005726 ORTHO05D001733 5.3e-07 57.4 47 55.3
BcaC04g23031 Brassica carinata HOM05D005726 ORTHO05D001733 6.9e-07 57.0 47 59.6
C09p12890 Brassica napus HOM05D005726 ORTHO05D001733 6.9e-07 57.0 47 59.6
BolC9t54179H Brassica oleracea HOM05D005726 ORTHO05D001733 6.9e-07 57.0 47 59.6
Thecc.08G044700 Theobroma cacao HOM05D005726 ORTHO05D001733 6.9e-07 57.0 42 64.3
VMungo1309G2498 Vigna mungo HOM05D005726 ORTHO05D001733 9.1e-07 56.6 42 59.5
Ciclev10003161m.g Citrus clementina HOM05D005726 ORTHO05D001733 1.5e-06 55.8 47 57.4
BcaB07g31777 Brassica carinata HOM05D005726 ORTHO05D001733 2.0e-06 55.5 47 57.4
Glyma.04G024200 Glycine max HOM05D005726 ORTHO05D001733 2.6e-06 55.1 42 61.9
Manes.04G078400 Manihot esculenta HOM05D005726 ORTHO05D001733 2.6e-06 55.1 28 71.4
A09p10920 Brassica napus HOM05D005726 ORTHO05D001733 3.4e-06 54.7 47 57.4
BraA09t36732Z Brassica rapa HOM05D005726 ORTHO05D001733 3.4e-06 54.7 47 57.4
Lalb_Chr11g0061921 Lupinus albus HOM05D005726 ORTHO05D001733 3.4e-06 54.7 42 59.5
Atru.chr13.290 Acer truncatum HOM05D005726 ORTHO05D001733 5.9e-06 53.9 47 51.1
Sp2g14650 Schrenkiella parvula HOM05D005726 ORTHO05D001733 5.9e-06 53.9 47 55.3


User provided reference genes

Program Settings