Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 6.3e-48 193.7 96 100.0
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.4e-47 191.8 96 99.0
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.4e-42 176.0 86 100.0
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 1.2e-35 152.9 96 83.3
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.8e-34 147.1 95 78.9
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 4.9e-32 141.0 122 63.1
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.9e-26 120.2 59 93.2
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.9e-23 112.5 91 58.2
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 1.6e-22 109.4 96 53.1
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-22 108.2 80 60.0
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 5.1e-21 104.4 98 53.1
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.5e-20 102.1 127 44.9
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 7.3e-20 100.5 93 53.8
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 8.1e-19 97.1 91 49.5
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 8.1e-19 97.1 92 51.1
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 3.4e-17 91.7 92 43.5
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 9.9e-17 90.1 92 44.6
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 9.9e-17 90.1 94 46.8
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.7e-16 89.4 92 46.7
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 2.9e-16 88.6 91 48.4
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 3.7e-16 88.2 93 40.9
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 3.7e-16 88.2 94 45.7
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 3.7e-16 88.2 92 43.5
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 4.9e-16 87.8 88 47.7
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 6.4e-16 87.4 92 47.8
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 8.3e-16 87.0 90 47.8
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 8.3e-16 87.0 93 47.3
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.1e-15 86.7 89 46.1
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 1.4e-15 86.3 92 45.7
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 1.4e-15 86.3 94 44.7
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.9e-15 85.9 88 44.3
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.9e-15 85.9 92 46.7
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.9e-15 85.9 92 46.7
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 1.9e-15 85.9 94 46.8
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.9e-15 85.9 96 47.9
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.4e-15 85.5 95 46.3
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.4e-15 85.5 87 49.4
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.4e-15 85.5 90 45.6
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 2.4e-15 85.5 90 48.9
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 3.2e-15 85.1 84 46.4
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 4.1e-15 84.7 84 48.8
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.4e-15 84.3 94 43.6
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 7.1e-15 84.0 90 40.0
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 9.2e-15 83.6 90 46.7
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 9.2e-15 83.6 92 45.7
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 9.2e-15 83.6 95 40.0
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 9.2e-15 83.6 97 45.4
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-14 83.2 90 50.0
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.2e-14 83.2 92 45.7
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.2e-14 83.2 95 45.3
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.2e-14 83.2 96 44.8
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 1.6e-14 82.8 104 43.3
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 2.1e-14 82.4 83 47.0
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 2.1e-14 82.4 86 44.2
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.1e-14 82.4 96 45.8
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 2.7e-14 82.0 96 40.6
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.7e-14 82.0 94 38.3
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.7e-14 82.0 95 44.2
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 2.7e-14 82.0 94 38.3
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 2.7e-14 82.0 91 48.4
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-14 81.6 89 40.4
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 3.5e-14 81.6 91 41.8
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 3.5e-14 81.6 92 40.2
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 6.0e-14 80.9 95 45.3
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 6.0e-14 80.9 91 45.1
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 7.8e-14 80.5 92 43.5
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 1.0e-13 80.1 99 43.4
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 1.0e-13 80.1 99 43.4
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 1.0e-13 80.1 85 42.4
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.0e-13 80.1 83 48.2
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 1.3e-13 79.7 91 45.1
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 1.3e-13 79.7 88 48.9
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 1.7e-13 79.3 92 39.1
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 3.0e-13 78.6 92 42.4
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 3.9e-13 78.2 93 43.0
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 3.9e-13 78.2 98 37.8
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.1e-13 77.8 83 41.0
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.1e-13 77.8 83 41.0
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 6.6e-13 77.4 89 41.6
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 6.6e-13 77.4 93 43.0
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 8.6e-13 77.0 88 43.2
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.1e-12 76.6 87 40.2
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.5e-12 76.3 87 42.5
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.5e-12 76.3 98 43.9
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.5e-12 75.5 84 41.7
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 2.5e-12 75.5 90 44.4
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.5e-12 75.5 87 41.4
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.5e-12 75.5 70 45.7
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 2.5e-12 75.5 90 43.3
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.3e-12 75.1 84 42.9
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 3.3e-12 75.1 93 40.9
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.3e-12 75.1 93 40.9
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 3.3e-12 75.1 90 43.3
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 3.3e-12 75.1 90 43.3
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 3.3e-12 75.1 92 42.4
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 7.3e-12 73.9 86 37.2
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 7.3e-12 73.9 89 41.6
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 9.6e-12 73.6 53 58.5
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 9.6e-12 73.6 74 41.9
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.6e-12 73.6 58 55.2
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 9.6e-12 73.6 77 44.2
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 1.2e-11 73.2 54 51.9
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 1.2e-11 73.2 90 41.1
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 1.6e-11 72.8 71 42.3
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 1.6e-11 72.8 90 42.2
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.6e-11 72.8 86 36.0
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 1.6e-11 72.8 95 43.2
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.1e-11 72.4 82 43.9
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 2.8e-11 72.0 92 41.3
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 3.6e-11 71.6 69 44.9
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 3.6e-11 71.6 58 48.3
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 4.7e-11 71.2 82 40.2
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 6.2e-11 70.9 86 43.0
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 6.2e-11 70.9 82 36.6
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 6.2e-11 70.9 71 43.7
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 8.1e-11 70.5 101 34.7
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 1.1e-10 70.1 87 43.7
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 1.1e-10 70.1 88 36.4
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 1.4e-10 69.7 50 48.0
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 1.4e-10 69.7 80 42.5
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 1.4e-10 69.7 77 44.2
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 1.8e-10 69.3 77 44.2
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 1.8e-10 69.3 51 51.0
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.4e-10 68.9 91 39.6
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 2.4e-10 68.9 91 36.3
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 2.4e-10 68.9 52 44.2
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.1e-10 68.6 93 37.6
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.0e-10 68.2 92 39.1
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.0e-10 68.2 49 49.0
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 4.0e-10 68.2 80 40.0
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 4.0e-10 68.2 71 40.8
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 6.8e-10 67.4 54 50.0
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 6.8e-10 67.4 65 43.1
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 6.8e-10 67.4 61 41.0
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 6.8e-10 67.4 86 40.7
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 8.9e-10 67.0 81 39.5
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 1.2e-09 66.6 81 40.7
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.2e-09 66.6 57 45.6
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.2e-09 66.6 79 38.0
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 1.2e-09 66.6 78 37.2
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 1.5e-09 66.2 53 52.8
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 1.5e-09 66.2 53 52.8
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 2.0e-09 65.9 89 37.1
FAN18G0797 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-09 65.9 90 41.1
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 2.0e-09 65.9 91 37.4
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 2.0e-09 65.9 53 43.4
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 2.0e-09 65.9 50 48.0
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 2.0e-09 65.9 50 48.0
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.6e-09 65.5 89 37.1
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.6e-09 65.5 89 37.1
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.4e-09 65.1 80 35.0
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 3.4e-09 65.1 94 31.9
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 4.4e-09 64.7 80 33.8
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 4.4e-09 64.7 49 49.0
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.4e-09 64.7 95 41.1
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 5.8e-09 64.3 85 34.1
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.8e-09 64.3 96 29.2
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 5.8e-09 64.3 84 39.3
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.6e-09 63.9 69 40.6
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 7.6e-09 63.9 93 34.4
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 1.3e-08 63.2 51 41.2
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 1.3e-08 63.2 87 37.9
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 1.3e-08 63.2 91 34.1
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.7e-08 62.8 48 50.0
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.7e-08 62.8 82 35.4
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.7e-08 62.8 48 50.0
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.7e-08 62.8 82 35.4
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.7e-08 62.8 81 34.6
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 2.2e-08 62.4 59 44.1
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.2e-08 62.4 80 38.8
FvH4_5g02870 Fragaria vesca HOM05D003712 ORTHO05D004368 2.9e-08 62.0 90 38.9
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 2.9e-08 62.0 77 40.3
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 4.9e-08 61.2 103 27.2
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 4.9e-08 61.2 50 44.0
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 2.4e-07 58.9 90 28.9
FAN18G2182 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.4e-07 58.9 90 37.8
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 4.2e-07 58.2 77 36.4
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 5.4e-07 57.8 46 47.8
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 5.4e-07 57.8 87 34.5
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 2.1e-06 55.8 82 35.4


User provided reference genes

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