Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g34030 Fragaria vesca HOM05D006739 ORTHO05D008402 1.4e-87 328.2 243 100.0
FAN18G3137 Fragaria x ananassa HOM05D006739 ORTHO05D008402 1.4e-87 328.2 243 100.0
FAN08G0673 Fragaria x ananassa HOM05D006739 ORTHO05D008402 2.8e-85 320.5 243 98.4
RcHm_v2.0_Chr7g0233521 Rosa chinensis HOM05D006739 ORTHO05D008402 5.9e-75 286.2 243 86.0
Prupe.1G539000 Prunus persica HOM05D006739 ORTHO05D008402 6.1e-64 249.6 251 82.1
MD15G1390100 Malus domestica HOM05D006739 ORTHO05D008402 1.7e-58 231.5 251 74.5
MD08G1206600 Malus domestica HOM05D006739 ORTHO05D008402 1.1e-57 228.8 251 72.5
Cfa013823 Carpinus fangiana HOM05D006739 ORTHO05D008402 3.2e-44 184.1 167 56.9
Haze_22495 Corylus avellana HOM05D006739 ORTHO05D008402 1.6e-43 181.8 167 57.5
Dinv44882 Davidia involucrata HOM05D006739 ORTHO05D008402 4.7e-40 170.2 253 67.6
CiPaw.08G057600 Carya illinoinensis HOM05D006739 ORTHO05D008402 3.4e-38 164.1 177 52.5
CSS0033703 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 7.1e-36 156.4 169 53.8
CSS0036090 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 7.1e-36 156.4 169 53.8
Ciclev10000605m.g Citrus clementina HOM05D006739 ORTHO05D008402 4.6e-35 153.7 257 58.8
Hma1.2p1_0010F.1_g006410 Hydrangea macrophylla HOM05D006739 ORTHO05D008402 1.0e-34 152.5 252 60.7
Eucgr.F02164 Eucalyptus grandis HOM05D006739 ORTHO05D008402 1.9e-33 148.3 170 52.4
QL12p039876 Quercus lobata HOM05D006739 ORTHO05D008402 2.5e-33 147.9 257 59.5
TAR628G0153 Trochodendron aralioides HOM05D006739 ORTHO05D008402 5.6e-33 146.7 174 50.6
TWI56G0071 Tripterygium wilfordii HOM05D006739 ORTHO05D008402 2.8e-32 144.4 168 48.2
Rhsim07G0214200 Rhododendron simsii HOM05D006739 ORTHO05D008402 4.7e-32 143.7 158 54.4
Atru.chr13.953 Acer truncatum HOM05D006739 ORTHO05D008402 8.9e-31 139.4 171 49.1
Nitab4.5_0002667g0050 Nicotiana tabacum HOM05D006739 ORTHO05D008402 3.4e-30 137.5 243 66.3
Nitab4.5_0002667g0060 Nicotiana tabacum HOM05D006739 ORTHO05D008402 4.4e-30 137.1 243 63.4
Potri.002G109500 Populus trichocarpa HOM05D006739 ORTHO05D008402 1.3e-29 135.6 244 65.2
Sabra02G0086200 Salix brachista HOM05D006739 ORTHO05D008402 3.8e-29 134.0 156 51.3
vmacro04630 Vaccinium macrocarpon HOM05D006739 ORTHO05D008402 3.2e-28 131.0 159 52.2
Manes.05G187600 Manihot esculenta HOM05D006739 ORTHO05D008402 5.4e-28 130.2 162 48.1
CANSAT25G1844 Cannabis sativa HOM05D006739 ORTHO05D008402 7.1e-28 129.8 152 48.0
TAR152G0001 Trochodendron aralioides HOM05D006739 ORTHO05D008402 2.1e-27 128.3 262 53.1
Thecc.08G075400 Theobroma cacao HOM05D006739 ORTHO05D008402 2.7e-27 127.9 258 60.1
MBI16_g36544_MAGBIO Magnolia biondii HOM05D006739 ORTHO05D008402 3.5e-27 127.5 249 60.6
Migut.N00013 Erythranthe guttata HOM05D006739 ORTHO05D008402 4.6e-27 127.1 163 49.7
EL10Ac1g00466 Beta vulgaris HOM05D006739 ORTHO05D008402 1.3e-26 125.6 255 60.4
DCAR_019326 Daucus carota HOM05D006739 ORTHO05D008402 1.7e-26 125.2 174 44.3
COL.COLO4_35303 Corchorus olitorius HOM05D006739 ORTHO05D008402 1.5e-25 122.1 165 46.1
ClCG08G011830 Citrullus lanatus HOM05D006739 ORTHO05D008402 1.9e-25 121.7 245 62.0
Peaxi162Scf01212g00003 Petunia axillaris HOM05D006739 ORTHO05D008402 2.5e-25 121.3 243 63.8
Sopen06g003030 Solanum pennellii HOM05D006739 ORTHO05D008402 5.6e-25 120.2 282 56.0
ECA247G1663 Erigeron canadensis HOM05D006739 ORTHO05D008402 7.3e-25 119.8 156 43.6
Glyma.06G092600 Glycine max HOM05D006739 ORTHO05D008402 7.3e-25 119.8 169 46.2
Lsat_1_v5_gn_1_781 Lactuca sativa HOM05D006739 ORTHO05D008402 7.3e-25 119.8 156 44.2
Phvul.009G145100 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 7.3e-25 119.8 164 46.3
MSTRG.24837 Avicennia marina HOM05D006739 ORTHO05D008402 3.6e-24 117.5 160 47.5
Sc15g0003370 Simmondsia chinensis HOM05D006739 ORTHO05D008402 3.6e-24 117.5 160 46.9
Duzib093G0111 Durio zibethinus HOM05D006739 ORTHO05D008402 8.1e-24 116.3 258 55.0
Gohir.A06G030375 Gossypium hirsutum HOM05D006739 ORTHO05D008402 8.1e-24 116.3 248 59.3
PGSC0003DMG400014713 Solanum tuberosum HOM05D006739 ORTHO05D008402 1.1e-23 115.9 286 55.2
PGSC0003DMG400027357 Solanum tuberosum HOM05D006739 ORTHO05D008402 1.1e-23 115.9 286 55.2
VMungo1309G0048 Vigna mungo HOM05D006739 ORTHO05D008402 1.1e-23 115.9 164 45.1
Gorai.010G032500 Gossypium raimondii HOM05D006739 ORTHO05D008402 1.8e-23 115.2 248 58.9
CsaV3_2G030450 Cucumis sativus L. HOM05D006739 ORTHO05D008402 3.1e-23 114.4 254 59.1
Sed0004950 Sechium edule HOM05D006739 ORTHO05D008402 3.1e-23 114.4 153 48.4
TAR381G0861 Trochodendron aralioides HOM05D006739 ORTHO05D008402 3.1e-23 114.4 178 42.1
MELO3C011106.2 Cucumis melo HOM05D006739 ORTHO05D008402 4.0e-23 114.0 262 59.5
Glyma.04G090900 Glycine max HOM05D006739 ORTHO05D008402 4.0e-23 114.0 168 44.0
Actinidia19611 Actinidia chinensis HOM05D006739 ORTHO05D008402 6.9e-23 113.2 145 46.9
Ah.05g171720 Amaranthus hybridus HOM05D006739 ORTHO05D008402 1.5e-22 112.1 255 57.3
THA.LOC104816789 Tarenaya hassleriana HOM05D006739 ORTHO05D008402 1.5e-22 112.1 250 59.2
AT1G09900 Arabidopsis thaliana HOM05D006739 ORTHO05D008402 9.9e-22 109.4 252 58.7
Aa31LG1G4990 Aethionema arabicum HOM05D006739 ORTHO05D008402 1.7e-21 108.6 162 43.8
Lj1g0027306 Lotus japonicus HOM05D006739 ORTHO05D008402 1.7e-21 108.6 170 41.8
Carub.0001s0928 Capsella rubella HOM05D006739 ORTHO05D008402 4.9e-21 107.1 253 59.3
Duzib116G0618 Durio zibethinus HOM05D006739 ORTHO05D008402 8.4e-21 106.3 164 40.9
Hund26854 Selenicereus undatus HOM05D006739 ORTHO05D008402 3.2e-20 104.4 248 33.1
Gohir.D06G029600 Gossypium hirsutum HOM05D006739 ORTHO05D008402 9.3e-20 102.8 186 71.5
Sp1g08530 Schrenkiella parvula HOM05D006739 ORTHO05D008402 9.3e-20 102.8 252 59.1
Hund26833 Selenicereus undatus HOM05D006739 ORTHO05D008402 4.6e-19 100.5 156 42.3
AL1G20500 Arabidopsis lyrata HOM05D006739 ORTHO05D008402 1.0e-18 99.4 251 56.2
AUR62014385 Chenopodium quinoa HOM05D006739 ORTHO05D008402 1.3e-18 99.0 210 65.7
Oeu020282.1 Olea europaea HOM05D006739 ORTHO05D008402 1.3e-18 99.0 154 78.6
Aqoxy5G01872 Aquilegia oxysepala HOM05D006739 ORTHO05D008402 2.3e-18 98.2 250 58.4
CARHR009960 Cardamine hirsuta HOM05D006739 ORTHO05D008402 2.3e-18 98.2 163 42.3
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 3.9e-18 97.4 162 40.7
HanXRQChr11g0324241 Helianthus annuus HOM05D006739 ORTHO05D008402 8.7e-18 96.3 155 40.0
AUR62019126 Chenopodium quinoa HOM05D006739 ORTHO05D008402 3.3e-17 94.4 168 74.4
PSO700G0042 Papaver somniferum HOM05D006739 ORTHO05D008402 4.3e-17 94.0 190 68.4
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 1.3e-16 92.4 206 47.6
DCAR_012846 Daucus carota HOM05D006739 ORTHO05D008402 1.3e-16 92.4 165 38.2
Hund26853 Selenicereus undatus HOM05D006739 ORTHO05D008402 1.3e-16 92.4 157 38.9
A06p06610 Brassica napus HOM05D006739 ORTHO05D008402 2.8e-16 91.3 160 40.6
BraA06t23875Z Brassica rapa HOM05D006739 ORTHO05D008402 2.8e-16 91.3 160 40.6
Cpa.g.sc177.11 Carica papaya HOM05D006739 ORTHO05D008402 4.8e-16 90.5 130 40.8
BcaC05g24834 Brassica carinata HOM05D006739 ORTHO05D008402 1.1e-15 89.4 166 37.3
PGR042G0142 Punica granatum HOM05D006739 ORTHO05D008402 1.1e-15 89.4 97 56.7
PSO761G0270 Papaver somniferum HOM05D006739 ORTHO05D008402 1.4e-15 89.0 164 75.0
SalBow5G4649 Salvia bowleyana HOM05D006739 ORTHO05D008402 1.4e-15 89.0 92 54.3
C05p08020 Brassica napus HOM05D006739 ORTHO05D008402 7.6e-14 83.2 108 48.1
BolC5t29554H Brassica oleracea HOM05D006739 ORTHO05D008402 7.6e-14 83.2 93 53.8
arahy.Tifrunner.gnm1.ann1.CH37P4 Arachis hypogaea HOM05D006739 ORTHO05D008402 1.3e-13 82.4 260 38.8
Glyma.02G216900 Glycine max HOM05D006739 ORTHO05D008402 2.9e-13 81.3 116 44.8
Glyma.14G184200 Glycine max HOM05D006739 ORTHO05D008402 6.4e-13 80.1 210 57.1
Hund26842 Selenicereus undatus HOM05D006739 ORTHO05D008402 8.4e-13 79.7 146 39.0
arahy.Tifrunner.gnm1.ann1.M3C1JT Arachis hypogaea HOM05D006739 ORTHO05D008402 1.1e-12 79.3 260 31.2
VMungo0647G0534 Vigna mungo HOM05D006739 ORTHO05D008402 1.1e-12 79.3 166 37.3
Phvul.008G183900 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 1.4e-12 79.0 121 43.8
Phvul.008G184000 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 2.4e-12 78.2 124 42.7
CAN.G941.26 Capsicum annuum HOM05D006739 ORTHO05D008402 3.2e-12 77.8 209 62.7
CDE04G0064 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 4.6e-11 73.9 99 47.5
Ca_15539_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 6.0e-11 73.6 90 44.4
VMungo0647G1229 Vigna mungo HOM05D006739 ORTHO05D008402 6.0e-11 73.6 121 43.0
ATR0800G015 Amborella trichopoda HOM05D006739 ORTHO05D008402 1.8e-10 72.0 101 43.6
CDE06G1140 Ceratophyllum demersum HOM05D002753 ORTHO05D003097 3.0e-10 71.2 99 46.5
SGA_v2.0_scaffold123G33426 Striga asiatica HOM05D006739 ORTHO05D008402 1.9e-09 68.6 151 35.8
CDE07G2071 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 3.7e-08 64.3 99 42.4
Psat5g018720 Pisum sativum HOM05D006739 ORTHO05D008402 4.8e-08 63.9 86 44.2
Glyma.14G184300 Glycine max HOM05D006739 ORTHO05D008402 1.8e-07 62.0 154 37.0
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 2.4e-07 61.6 123 36.6
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 2.4e-07 61.6 123 36.6
TPR.G15758 Trifolium pratense HOM05D000069 ORTHO05D001849 5.3e-07 60.5 86 43.0


User provided reference genes

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