Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 0.0e+00 1129.8 560 100.0
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.6e-308 1062.0 667 83.1
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 4.5e-287 990.7 540 89.8
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 2.5e-285 984.9 564 86.5
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.3e-281 972.6 564 88.1
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 5.7e-266 920.6 560 80.7
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 1.4e-264 916.0 560 81.1
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 4.9e-257 891.0 560 77.7
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 1.4e-256 889.4 560 77.9
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 6.8e-251 870.5 560 76.4
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 1.2e-247 859.8 561 75.4
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 1.3e-246 856.3 559 74.4
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 4.7e-244 847.8 559 75.1
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 2.0e-242 842.4 561 75.0
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 5.8e-242 840.9 558 73.8
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 5.8e-242 840.9 559 73.2
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 9.8e-242 840.1 559 74.2
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 8.3e-241 837.0 559 72.8
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 1.1e-240 836.6 559 73.0
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 1.4e-240 836.3 559 73.7
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 1.4e-240 836.3 559 73.7
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 1.9e-240 835.9 559 73.5
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.4e-240 835.5 559 72.8
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 9.2e-240 833.6 559 73.2
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 2.7e-239 832.0 561 73.4
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 3.5e-239 831.6 557 73.8
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 3.5e-239 831.6 559 71.7
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 4.6e-239 831.2 560 73.2
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 6.0e-239 830.9 559 73.2
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 3.9e-238 828.2 560 73.0
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 5.0e-238 827.8 559 73.5
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 8.6e-238 827.0 561 73.8
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 1.5e-237 826.2 557 73.8
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 1.9e-237 825.9 559 73.3
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 7.3e-237 823.9 561 72.0
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 3.6e-236 821.6 559 73.3
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 3.6e-236 821.6 561 72.0
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 3.6e-236 821.6 559 71.9
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 4.7e-236 821.2 561 72.2
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 6.2e-236 820.8 561 71.7
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 6.2e-236 820.8 561 71.7
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 6.2e-236 820.8 561 71.7
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 1.8e-235 819.3 567 71.8
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 1.8e-235 819.3 561 70.6
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 2.3e-235 818.9 555 72.6
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 2.3e-235 818.9 561 71.8
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 5.2e-235 817.8 561 72.2
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 6.8e-235 817.4 550 72.9
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 6.8e-235 817.4 559 72.6
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 8.9e-235 817.0 546 75.5
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 1.2e-234 816.6 562 72.8
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 2.0e-234 815.8 559 71.2
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 2.6e-234 815.5 561 72.7
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 2.6e-234 815.5 562 71.4
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 4.4e-234 814.7 561 71.5
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 7.5e-234 813.9 558 70.4
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 9.8e-234 813.5 561 71.3
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 9.8e-234 813.5 559 71.6
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 1.3e-233 813.1 528 75.8
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 1.3e-233 813.1 561 71.7
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.3e-233 813.1 577 70.2
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 1.3e-233 813.1 559 71.0
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 2.9e-233 812.0 559 72.6
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 1.4e-232 809.7 559 70.7
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 2.4e-232 808.9 562 70.6
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 5.4e-232 807.7 561 70.4
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 5.4e-232 807.7 561 70.8
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 5.4e-232 807.7 562 70.8
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 9.2e-232 807.0 559 70.7
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 1.2e-231 806.6 557 69.7
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 3.5e-231 805.1 562 70.8
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 6.0e-231 804.3 561 70.6
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 1.0e-230 803.5 560 70.7
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 1.0e-230 803.5 559 71.0
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 2.3e-230 802.4 559 71.0
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 2.3e-230 802.4 546 74.5
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 2.3e-230 802.4 559 70.5
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 3.9e-230 801.6 561 70.4
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 3.9e-230 801.6 560 70.7
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 6.6e-230 800.8 559 71.0
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 3.3e-229 798.5 580 69.5
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.2e-228 796.6 558 71.1
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 2.1e-228 795.8 562 69.8
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 3.6e-228 795.0 561 70.1
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 6.2e-228 794.3 567 69.7
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 1.8e-227 792.7 559 69.6
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 2.3e-227 792.3 577 68.3
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 1.2e-226 790.0 561 69.3
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 1.5e-226 789.6 559 69.8
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.6e-226 788.9 586 67.6
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 3.4e-226 788.5 579 68.0
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 4.4e-226 788.1 567 69.1
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 2.2e-225 785.8 539 71.4
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 2.9e-225 785.4 540 71.7
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 1.4e-224 783.1 574 68.1
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 2.1e-223 779.2 561 68.6
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 5.1e-222 774.6 544 69.7
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 3.3e-221 771.9 561 67.9
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 7.3e-221 770.8 529 72.4
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 4.4e-218 761.5 553 65.8
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 5.8e-218 761.1 517 72.3
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 2.2e-217 759.2 563 69.1
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 8.4e-217 757.3 556 67.8
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 1.1e-216 756.9 566 66.8
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 1.1e-216 756.9 559 66.0
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 7.8e-215 750.7 554 68.1
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 1.3e-214 750.0 559 65.5
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 1.7e-214 749.6 554 66.1
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 2.5e-213 745.7 602 63.8
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 2.1e-212 742.7 561 66.8
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 2.1e-212 742.7 558 66.3
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 6.4e-209 731.1 602 63.0
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 1.4e-208 729.9 559 63.9
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 1.3e-206 723.4 492 72.0
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 4.3e-205 718.4 552 64.1
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 1.2e-202 710.3 492 69.5
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 2.6e-202 709.1 559 64.4
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 1.8e-198 696.4 560 61.4
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 4.8e-196 688.3 449 73.5
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 3.2e-192 675.6 551 60.1
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.7e-177 626.7 552 56.0
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 1.4e-176 623.6 391 75.7
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 4.6e-175 618.6 547 56.9
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 5.1e-174 615.1 391 75.7
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 6.7e-166 588.2 435 67.1
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 7.7e-162 574.7 555 54.6
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 1.3e-161 573.9 391 71.9
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 9.7e-157 557.8 552 53.1
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.4e-155 553.9 488 55.9
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 7.5e-149 531.6 322 78.6
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 5.5e-144 515.4 336 75.3
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 3.4e-141 506.1 308 79.9
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 3.4e-117 426.4 292 68.8
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 9.9e-117 424.9 322 64.0
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 9.2e-115 418.3 325 63.4
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 2.3e-113 413.7 292 69.5
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.0e-105 388.3 246 76.8
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 1.3e-100 371.3 238 76.1
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 4.8e-95 352.8 235 73.2
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 1.2e-93 348.2 272 65.1
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 3.4e-93 346.7 276 62.7
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 5.5e-83 312.8 240 64.6
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 2.1e-82 310.8 267 59.2
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 9.7e-56 222.2 192 60.9
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 5.9e-53 213.0 141 73.0
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.7e-52 211.5 138 73.2
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.2e-52 211.1 137 72.3
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 6.5e-52 209.5 139 71.2
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.1e-51 208.8 139 70.5
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.8e-46 191.4 128 70.3
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 5.9e-37 159.8 98 74.5
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 2.9e-36 157.5 116 64.7
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 5.5e-27 126.7 106 62.3
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 7.3e-19 99.8 63 71.4
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 3.6e-18 97.4 496 24.8
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.6e-18 97.4 63 69.8
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 1.2e-16 92.4 54 77.8
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 1.3e-15 89.0 57 70.2
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 5.4e-14 83.6 63 61.9
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 7.0e-14 83.2 63 61.9
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 1.6e-13 82.0 438 24.9
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 2.7e-13 81.3 63 60.3
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 4.6e-13 80.5 63 60.3
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 2.8e-10 71.2 54 63.0
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 3.1e-09 67.8 54 55.6
FvH4_5g33600 Fragaria vesca HOM05D001656 ORTHO05D005043 3.1e-09 67.8 49 65.3
FAN18G3130 Fragaria x ananassa HOM05D001656 ORTHO05D005043 3.1e-09 67.8 49 65.3
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 3.4e-08 64.3 61 50.8


User provided reference genes

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