Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g33461 Fragaria vesca HOM05D002377 ORTHO05D002656 2.7e-94 348.6 168 100.0
FAN18G1584 Fragaria x ananassa HOM05D002377 ORTHO05D002656 1.6e-70 269.6 184 77.2
FvH4_6g41810 Fragaria vesca HOM05D002377 ORTHO05D002656 6.7e-45 184.5 181 55.8
FAN14G1062 Fragaria x ananassa HOM05D002377 ORTHO05D002656 3.3e-44 182.2 181 55.2
FAN09G2345 Fragaria x ananassa HOM05D002377 ORTHO05D002656 1.7e-43 179.9 181 53.6
FAN02G2436 Fragaria x ananassa HOM05D002377 ORTHO05D002656 1.8e-42 176.4 195 51.3
FAN05G0313 Fragaria x ananassa HOM05D002377 ORTHO05D002656 4.5e-41 171.8 179 53.6
FAN02G0398 Fragaria x ananassa HOM05D002377 ORTHO05D002656 1.5e-39 166.8 179 51.4
FAN14G2079 Fragaria x ananassa HOM05D002377 ORTHO05D002656 3.2e-39 165.6 179 52.0
FAN09G3656 Fragaria x ananassa HOM05D002377 ORTHO05D002656 6.8e-29 131.3 197 44.7
FvH4_6g41910 Fragaria vesca HOM05D002377 ORTHO05D002656 7.0e-26 121.3 147 45.6
Lsat_1_v5_gn_5_25121 Lactuca sativa HOM05D002377 ORTHO05D002656 2.6e-20 102.8 187 33.2
MD17G1074500 Malus domestica HOM05D002377 ORTHO05D002656 2.6e-20 102.8 231 32.9
ECA246G0024 Erigeron canadensis HOM05D002377 ORTHO05D002656 7.5e-20 101.3 192 35.9
Thhalv10018457m.g Eutrema salsugineum HOM05D002377 ORTHO05D002656 3.7e-19 99.0 190 33.2
HanXRQChr05g0153921 Helianthus annuus HOM05D002377 ORTHO05D002656 5.4e-18 95.1 209 31.1
GSVIVG01036441001 Vitis vinifera HOM05D002377 ORTHO05D002656 7.0e-18 94.7 198 32.8
Aqoxy3G03923 Aquilegia oxysepala HOM05D002377 ORTHO05D002656 9.2e-18 94.4 187 33.7
BcaB05g24254 Brassica carinata HOM05D002377 ORTHO05D002656 9.2e-18 94.4 201 30.8
BraA02t06475Z Brassica rapa HOM05D002377 ORTHO05D002656 5.9e-17 91.7 215 30.7
C02p22730 Brassica napus HOM05D002377 ORTHO05D002656 2.3e-16 89.7 215 31.6
BolC2t08426H Brassica oleracea HOM05D002377 ORTHO05D002656 2.3e-16 89.7 215 31.6
SalBow3G3556 Salvia bowleyana HOM05D002377 ORTHO05D002656 2.3e-16 89.7 189 33.3
MD09G1085300 Malus domestica HOM05D002377 ORTHO05D002656 2.9e-16 89.4 253 28.9
AT1G67270 Arabidopsis thaliana HOM05D002377 ORTHO05D002656 6.6e-16 88.2 198 31.8
A02p14120 Brassica napus HOM05D002377 ORTHO05D002656 8.6e-16 87.8 223 29.1
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 8.6e-16 87.8 180 32.8
A07p19910 Brassica napus HOM05D002377 ORTHO05D002656 2.5e-15 86.3 166 31.3
Sp5g22200 Schrenkiella parvula HOM05D002377 ORTHO05D002656 2.5e-15 86.3 222 28.8
Sp7g13280 Schrenkiella parvula HOM05D002377 ORTHO05D002656 2.5e-15 86.3 206 29.6
BcaC03g14822 Brassica carinata HOM05D002377 ORTHO05D002656 4.3e-15 85.5 223 28.3
Sp7g03230 Schrenkiella parvula HOM05D002377 ORTHO05D002656 5.6e-15 85.1 210 30.5
Aa31LG10G11610 Aethionema arabicum HOM05D002377 ORTHO05D002656 1.6e-14 83.6 177 35.6
C06p18180 Brassica napus HOM05D002377 ORTHO05D002656 1.6e-14 83.6 169 30.2
BcaC08g44385 Brassica carinata HOM05D002377 ORTHO05D002656 2.1e-14 83.2 169 30.2
BolC6t37028H Brassica oleracea HOM05D002377 ORTHO05D002656 2.1e-14 83.2 169 30.2
BraA07t29694Z Brassica rapa HOM05D002377 ORTHO05D002656 2.1e-14 83.2 166 30.7
CARHR059750 Cardamine hirsuta HOM05D002377 ORTHO05D002656 2.8e-14 82.8 171 33.9
Rhsim10G0063300 Rhododendron simsii HOM05D002377 ORTHO05D002656 3.6e-14 82.4 196 30.1
BcaB02g07988 Brassica carinata HOM05D002377 ORTHO05D002656 1.0e-13 80.9 166 31.9
BcaB02g07989 Brassica carinata HOM05D002377 ORTHO05D002656 1.0e-13 80.9 166 31.9
BcaB02g07990 Brassica carinata HOM05D002377 ORTHO05D002656 1.0e-13 80.9 166 31.9
BcaB02g07991 Brassica carinata HOM05D002377 ORTHO05D002656 1.8e-13 80.1 166 31.9
A07p19760 Brassica napus HOM05D002377 ORTHO05D002656 1.8e-13 80.1 169 29.6
vmacro05571 Vaccinium macrocarpon HOM05D002377 ORTHO05D002656 1.8e-13 80.1 199 32.7
AL7G51760 Arabidopsis lyrata HOM05D002377 ORTHO05D002656 4.0e-13 79.0 105 38.1
Sed0013300 Sechium edule HOM05D002377 ORTHO05D002656 5.2e-13 78.6 101 38.6
Thhalv10015379m.g Eutrema salsugineum HOM05D002377 ORTHO05D002656 6.8e-13 78.2 190 29.5
BraA07t29676Z Brassica rapa HOM05D002377 ORTHO05D002656 1.2e-12 77.4 173 30.1
ClCG07G016290 Citrullus lanatus HOM05D002377 ORTHO05D002656 1.2e-12 77.4 101 39.6
Hund13732 Selenicereus undatus HOM05D002377 ORTHO05D002656 1.2e-12 77.4 116 38.8
TAR371G0143 Trochodendron aralioides HOM05D002377 ORTHO05D002656 1.2e-12 77.4 84 42.9
AT5G38690 Arabidopsis thaliana HOM05D002377 ORTHO05D002656 1.5e-12 77.0 102 38.2
BcaC08g44388 Brassica carinata HOM05D002377 ORTHO05D002656 1.5e-12 77.0 166 30.1
BolC6t37032H Brassica oleracea HOM05D002377 ORTHO05D002656 1.5e-12 77.0 166 30.1
C06p18200 Brassica napus HOM05D002377 ORTHO05D002656 3.4e-12 75.9 166 29.5
Nitab4.5_0007207g0020 Nicotiana tabacum HOM05D002377 ORTHO05D002656 3.4e-12 75.9 84 40.5
Thhalv10028126m.g Eutrema salsugineum HOM05D002377 ORTHO05D002656 5.7e-12 75.1 102 38.2
PGSC0003DMG400024186 Solanum tuberosum HOM05D002377 ORTHO05D002656 5.7e-12 75.1 134 33.6
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 7.5e-12 74.7 101 37.6
GSVIVG01036454001 Vitis vinifera HOM05D002377 ORTHO05D002656 7.5e-12 74.7 81 44.4
Actinidia36310 Actinidia chinensis HOM05D002377 ORTHO05D002656 9.8e-12 74.3 250 26.0
MELO3C018942.2 Cucumis melo HOM05D002377 ORTHO05D002656 9.8e-12 74.3 115 37.4
Lalb_Chr21g0317891 Lupinus albus HOM05D002377 ORTHO05D002656 9.8e-12 74.3 96 38.5
Sopen02g014120 Solanum pennellii HOM05D002377 ORTHO05D002656 1.3e-11 73.9 134 35.1
vmacro22489 Vaccinium macrocarpon HOM05D002377 ORTHO05D002656 1.3e-11 73.9 249 26.1
Manes.02G066800 Manihot esculenta HOM05D002377 ORTHO05D002656 1.7e-11 73.6 101 36.6
Hund05003 Selenicereus undatus HOM05D002377 ORTHO05D002656 1.7e-11 73.6 139 33.1
Sc10g0001320 Simmondsia chinensis HOM05D002377 ORTHO05D002656 1.7e-11 73.6 115 36.5
RcHm_v2.0_Chr2g0163111 Rosa chinensis HOM05D002377 ORTHO05D002656 2.9e-11 72.8 101 37.6
Solyc02g063060.4 Solanum lycopersicum HOM05D002377 ORTHO05D002656 2.9e-11 72.8 134 34.3
Aa31LG2G3640 Aethionema arabicum HOM05D002377 ORTHO05D002656 3.7e-11 72.4 104 35.6
Sabra06G0201400 Salix brachista HOM05D002377 ORTHO05D002656 3.7e-11 72.4 110 36.4
Atru.chr8.841 Acer truncatum HOM05D002377 ORTHO05D002656 4.9e-11 72.0 293 24.6
Hma1.2p1_0550F.1_g177270 Hydrangea macrophylla HOM05D002377 ORTHO05D002656 4.9e-11 72.0 136 32.4
THA.LOC104805549 Tarenaya hassleriana HOM05D002377 ORTHO05D002656 4.9e-11 72.0 145 33.1
CSS0036215 Camellia sinensis var. sinensis HOM05D002377 ORTHO05D002656 6.4e-11 71.6 84 39.3
CANSAT64G0813 Cannabis sativa HOM05D002377 ORTHO05D002656 6.4e-11 71.6 84 39.3
CAN.G23.15 Capsicum annuum HOM05D002377 ORTHO05D000001 6.4e-11 71.6 85 37.6
Nitab4.5_0000628g0170 Nicotiana tabacum HOM05D002377 ORTHO05D002656 6.4e-11 71.6 119 33.6
Rhsim12G0144500 Rhododendron simsii HOM05D002377 ORTHO05D002656 6.4e-11 71.6 250 26.0
Gohir.A07G071300 Gossypium hirsutum HOM05D002377 ORTHO05D002656 8.3e-11 71.2 101 37.6
Gorai.001G080000 Gossypium raimondii HOM05D002377 ORTHO05D002656 8.3e-11 71.2 101 37.6
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 8.3e-11 71.2 173 30.6
TAR622G0846 Trochodendron aralioides HOM05D002377 ORTHO05D002656 8.3e-11 71.2 82 37.8
Medtr6g017265 Medicago truncatula HOM05D002377 ORTHO05D002656 1.1e-10 70.9 84 40.5
Nn4g23747 Nelumbo nucifera HOM05D002377 ORTHO05D002656 1.1e-10 70.9 153 31.4
Ah.10g037560 Amaranthus hybridus HOM05D002377 ORTHO05D002656 1.4e-10 70.5 114 36.0
BolC6t39138H Brassica oleracea HOM05D002377 ORTHO05D002656 1.4e-10 70.5 257 24.5
CSS0047835 Camellia sinensis var. sinensis HOM05D002377 ORTHO05D002656 1.4e-10 70.5 84 39.3
Cpa.g.sc179.21 Carica papaya HOM05D002377 ORTHO05D002656 1.4e-10 70.5 84 39.3
Dinv07366 Davidia involucrata HOM05D002377 ORTHO05D002656 1.4e-10 70.5 84 39.3
FAN02G2893 Fragaria x ananassa HOM05D002377 ORTHO05D002656 1.4e-10 70.5 101 35.6
FAN05G2582 Fragaria x ananassa HOM05D002377 ORTHO05D002656 1.4e-10 70.5 101 35.6
Manes.01G108500 Manihot esculenta HOM05D002377 ORTHO05D002656 1.4e-10 70.5 85 38.8
Medtr0024s0330 Medicago truncatula HOM05D002377 ORTHO05D002656 1.4e-10 70.5 87 37.9
Potri.006G257400 Populus trichocarpa HOM05D002377 ORTHO05D002656 1.4e-10 70.5 115 35.7
QL02p051473 Quercus lobata HOM05D002377 ORTHO05D002656 1.4e-10 70.5 84 38.1
HPP92_008866 Vanilla planifolia HOM05D002377 ORTHO05D002656 1.4e-10 70.5 84 39.3
Cfa007943 Carpinus fangiana HOM05D002377 ORTHO05D002656 1.8e-10 70.1 250 26.0
FAN09G2786 Fragaria x ananassa HOM05D002377 ORTHO05D002656 1.8e-10 70.1 101 35.6
FAN14G1662 Fragaria x ananassa HOM05D002377 ORTHO05D002656 1.8e-10 70.1 101 35.6
Gohir.A12G265700 Gossypium hirsutum HOM05D002377 ORTHO05D002656 2.4e-10 69.7 84 38.1
Gorai.008G285600 Gossypium raimondii HOM05D002377 ORTHO05D002656 2.4e-10 69.7 84 38.1
Psat1g013040 Pisum sativum HOM05D002377 ORTHO05D002656 2.4e-10 69.7 132 35.6
Aa31LG9G16950 Aethionema arabicum HOM05D002377 ORTHO05D002656 3.2e-10 69.3 263 24.7
MSTRG.15287 Avicennia marina HOM05D002377 ORTHO05D002656 3.2e-10 69.3 84 36.9
Gohir.D07G075800 Gossypium hirsutum HOM05D002377 ORTHO05D002656 3.2e-10 69.3 101 36.6
Sabra18G0026900 Salix brachista HOM05D002377 ORTHO05D002656 3.2e-10 69.3 122 33.6
HPP92_008846 Vanilla planifolia HOM05D002377 ORTHO05D002656 3.2e-10 69.3 272 24.6
Aqoxy3G03924 Aquilegia oxysepala HOM05D002377 ORTHO05D002656 4.1e-10 68.9 81 39.5
Sed0012433 Sechium edule HOM05D002377 ORTHO05D002656 4.1e-10 68.9 115 33.9
Actinidia18943 Actinidia chinensis HOM05D002377 ORTHO05D002656 7.0e-10 68.2 138 31.2
C06p18490 Brassica napus HOM05D002377 ORTHO05D002656 9.2e-10 67.8 166 29.5
Duzib205G0005 Durio zibethinus HOM05D002377 ORTHO05D002656 9.2e-10 67.8 84 36.9
ATR0589G037 Amborella trichopoda HOM05D002377 ORTHO05D002656 1.2e-09 67.4 84 36.9
Lj1g0023838 Lotus japonicus HOM05D002377 ORTHO05D002656 1.2e-09 67.4 85 35.3
Lj2g0023885 Lotus japonicus HOM05D002377 ORTHO05D002656 1.2e-09 67.4 84 35.7
BcaB03g15217 Brassica carinata HOM05D002377 ORTHO05D002656 1.6e-09 67.0 117 30.8
QL10p022421 Quercus lobata HOM05D002377 ORTHO05D002656 1.6e-09 67.0 132 30.3
QL10p023680 Quercus lobata HOM05D002377 ORTHO05D002656 1.6e-09 67.0 132 30.3
GSVIVG01008246001 Vitis vinifera HOM05D002377 ORTHO05D002656 2.0e-09 66.6 106 33.0
Cpa.g.sc13.40 Carica papaya HOM05D002377 ORTHO05D002656 2.7e-09 66.2 84 38.1
CsaV3_4G008820 Cucumis sativus L. HOM05D002377 ORTHO05D002656 2.7e-09 66.2 115 34.8
Duzib138G1604 Durio zibethinus HOM05D002377 ORTHO05D002656 2.7e-09 66.2 130 32.3
Mapoly0114s0035 Marchantia polymorpha HOM05D002377 ORTHO05D002656 2.7e-09 66.2 81 38.3
MBI16_g25111_MAGBIO Magnolia biondii HOM05D002377 ORTHO05D002656 3.5e-09 65.9 76 43.4
A07p33880 Brassica napus HOM05D002377 ORTHO05D002656 4.6e-09 65.5 116 31.9
CARHR056350 Cardamine hirsuta HOM05D002377 ORTHO05D002656 4.6e-09 65.5 105 32.4
Cc07_g08990 Coffea canephora HOM05D002377 ORTHO05D002656 4.6e-09 65.5 85 37.6
Nn3g17762 Nelumbo nucifera HOM05D002377 ORTHO05D002656 4.6e-09 65.5 133 30.8
BcaC08g46154 Brassica carinata HOM05D002377 ORTHO05D002656 5.9e-09 65.1 117 31.6
C06p42990 Brassica napus HOM05D002377 ORTHO05D002656 5.9e-09 65.1 117 31.6
BraA07t31014Z Brassica rapa HOM05D002377 ORTHO05D002656 5.9e-09 65.1 117 31.6
Haze_14132 Corylus avellana HOM05D002377 ORTHO05D002656 5.9e-09 65.1 108 32.4
Os05g0300700 Oryza sativa ssp. japonica HOM05D002377 ORTHO05D002656 5.9e-09 65.1 224 27.2
Potri.018G024400 Populus trichocarpa HOM05D002377 ORTHO05D002656 5.9e-09 65.1 118 33.9
TPR.G32439 Trifolium pratense HOM05D002377 ORTHO05D002656 5.9e-09 65.1 102 36.3
TWI77G0863 Tripterygium wilfordii HOM05D002377 ORTHO05D002656 5.9e-09 65.1 128 30.5
Ca_30066_v3 Cicer arietinum L. HOM05D002377 ORTHO05D002656 7.8e-09 64.7 108 30.6
Dinv34846 Davidia involucrata HOM05D002377 ORTHO05D002656 7.8e-09 64.7 79 38.0
CiPaw.03G059900 Carya illinoinensis HOM05D002377 ORTHO05D002656 1.0e-08 64.3 109 33.9
QL02p052529 Quercus lobata HOM05D002377 ORTHO05D002656 1.0e-08 64.3 165 29.1
SEGI_24532 Sequoiadendron giganteum HOM05D002377 ORTHO05D002656 1.0e-08 64.3 104 31.7
Aqoxy2G02546 Aquilegia oxysepala HOM05D002377 ORTHO05D002656 1.3e-08 63.9 101 33.7
MSTRG.2746 Avicennia marina HOM05D002377 ORTHO05D002656 1.3e-08 63.9 87 32.2
Ciclev10013338m.g Citrus clementina HOM05D002377 ORTHO05D002656 1.7e-08 63.5 135 28.1
Lj2C446G7 Lonicera japonica HOM05D002377 ORTHO05D002656 2.3e-08 63.2 84 35.7
Aqoxy3G00365 Aquilegia oxysepala HOM05D002377 ORTHO05D002656 3.0e-08 62.8 82 34.1
Gohir.D12G265833 Gossypium hirsutum HOM05D002377 ORTHO05D002656 3.0e-08 62.8 129 31.8
Gohir.D12G265900 Gossypium hirsutum HOM05D002377 ORTHO05D002656 3.0e-08 62.8 129 31.8
BcaC08g44412 Brassica carinata HOM05D002377 ORTHO05D002656 3.9e-08 62.4 171 29.2
ECA232G2661 Erigeron canadensis HOM05D002377 ORTHO05D002656 5.0e-08 62.0 140 29.3
arahy.Tifrunner.gnm1.ann1.0ZFC4V Arachis hypogaea HOM05D002377 ORTHO05D002656 6.6e-08 61.6 94 31.9
COL.COLO4_16236 Corchorus olitorius HOM05D002377 ORTHO05D002656 1.1e-07 60.8 116 31.0
Migut.L00304 Erythranthe guttata HOM05D002377 ORTHO05D002656 1.5e-07 60.5 161 24.8
Lsat_1_v5_gn_4_153060 Lactuca sativa HOM05D002377 ORTHO05D002656 1.5e-07 60.5 84 34.5
DCAR_017210 Daucus carota HOM05D002377 ORTHO05D002656 1.9e-07 60.1 150 28.0
BolC6t37062H Brassica oleracea HOM05D002377 ORTHO05D002656 3.3e-07 59.3 150 27.3
Ah.16g101980 Amaranthus hybridus HOM05D002377 ORTHO05D002656 4.3e-07 58.9 129 30.2
HanXRQChr14g0438691 Helianthus annuus HOM05D002377 ORTHO05D002656 4.3e-07 58.9 156 28.2
Ah.14g079560 Amaranthus hybridus HOM05D002377 ORTHO05D002656 9.5e-07 57.8 61 37.7
Ca_26177_v3 Cicer arietinum L. HOM05D002377 ORTHO05D002656 9.5e-07 57.8 126 26.2
HanXRQChr11g0324961 Helianthus annuus HOM05D002377 ORTHO05D002656 9.5e-07 57.8 75 36.0
Thecc.04G137200 Theobroma cacao HOM05D002377 ORTHO05D002656 1.6e-06 57.0 134 30.6
Lalb_Chr21g0317901 Lupinus albus HOM05D002377 ORTHO05D002656 2.1e-06 56.6 85 35.3
VMungo0464G0128 Vigna mungo HOM05D002377 ORTHO05D002656 2.1e-06 56.6 161 26.1
Hma1.2p1_0340F.1_g129800 Hydrangea macrophylla HOM05D002377 ORTHO05D002656 2.8e-06 56.2 104 32.7
Lj1g0011123 Lotus japonicus HOM05D002377 ORTHO05D002656 2.8e-06 56.2 83 31.3


User provided reference genes

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