Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 4.9e-134 481.5 309 100.0
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.1e-129 466.1 319 92.2
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 6.4e-126 454.5 313 92.3
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.0e-120 435.3 313 82.4
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 7.6e-119 431.0 309 90.0
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 1.3e-94 350.5 309 72.2
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 4.8e-89 332.0 304 70.7
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 5.3e-88 328.6 311 68.8
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 9.0e-88 327.8 302 71.5
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 2.6e-87 326.2 312 71.5
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 2.6e-87 326.2 314 61.5
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 4.5e-87 325.5 310 68.7
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 8.5e-86 321.2 317 66.2
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 1.1e-85 320.9 312 67.6
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 3.2e-85 319.3 308 67.2
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 7.2e-85 318.2 315 69.2
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.6e-84 317.0 316 68.0
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 2.7e-84 316.2 314 66.2
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 6.1e-84 315.1 302 68.2
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 3.3e-82 309.3 326 69.0
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 9.7e-82 307.8 308 69.5
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 1.3e-81 307.4 302 63.2
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 1.7e-81 307.0 321 69.2
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 2.2e-81 306.6 313 66.1
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 2.2e-81 306.6 318 63.2
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 4.8e-81 305.4 304 67.4
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 8.2e-81 304.7 314 63.1
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.8e-80 303.5 309 62.5
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 5.3e-80 302.0 308 70.1
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 1.5e-79 300.4 307 60.6
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 1.0e-78 297.7 309 65.0
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 1.3e-78 297.4 314 69.4
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 8.5e-78 294.7 311 68.2
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 1.9e-77 293.5 304 67.8
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 2.5e-77 293.1 305 63.9
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 2.5e-77 293.1 311 63.7
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 3.2e-77 292.7 315 66.0
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 2.1e-76 290.0 309 65.0
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.1e-76 290.0 317 59.0
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 2.1e-76 290.0 316 58.5
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 2.1e-76 290.0 307 61.6
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 2.7e-76 289.7 314 64.0
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.6e-76 289.3 327 63.3
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 3.6e-76 289.3 309 68.0
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 3.6e-76 289.3 311 65.3
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 4.7e-76 288.9 316 58.5
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 4.7e-76 288.9 310 62.6
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 6.1e-76 288.5 304 65.8
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 1.4e-75 287.3 304 65.8
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 6.7e-75 285.0 308 66.6
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.5e-74 283.9 306 65.0
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 1.5e-74 283.9 303 61.7
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 4.4e-74 282.3 304 67.1
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 5.7e-74 282.0 330 65.5
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 7.4e-74 281.6 307 66.8
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.7e-73 280.4 310 64.8
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 3.7e-73 279.3 329 65.3
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 6.3e-73 278.5 307 63.5
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 1.4e-72 277.3 308 60.1
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 1.4e-72 277.3 311 61.4
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 1.4e-72 277.3 322 59.3
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 1.8e-72 276.9 318 59.1
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 1.8e-72 276.9 312 57.7
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 1.8e-72 276.9 316 56.3
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 1.8e-72 276.9 316 56.3
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 1.8e-72 276.9 308 68.2
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 3.1e-72 276.2 322 66.8
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 3.1e-72 276.2 298 64.8
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 3.1e-72 276.2 321 60.1
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 7.0e-72 275.0 317 62.5
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 9.1e-72 274.6 300 64.3
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 4.5e-71 272.3 317 65.3
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 5.9e-71 271.9 309 58.9
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 5.9e-71 271.9 309 58.9
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 1.0e-70 271.2 313 60.4
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 1.3e-70 270.8 318 58.5
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.3e-70 270.8 316 61.1
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 2.9e-70 269.6 305 60.0
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 5.0e-70 268.9 312 56.4
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 8.5e-70 268.1 288 67.4
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 1.1e-69 267.7 304 69.1
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 1.1e-69 267.7 304 69.1
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.9e-69 266.9 319 53.3
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 3.2e-69 266.2 356 57.9
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 3.2e-69 266.2 307 55.7
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 1.2e-68 264.2 310 62.9
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 2.1e-68 263.5 311 61.1
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 2.7e-68 263.1 304 63.5
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 4.7e-68 262.3 310 68.7
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 6.1e-68 261.9 316 56.3
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 6.1e-68 261.9 302 62.3
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 8.0e-68 261.5 315 61.3
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 2.3e-67 260.0 311 65.6
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 6.7e-67 258.5 311 65.3
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 1.1e-66 257.7 308 62.3
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 1.7e-65 253.8 303 53.5
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 2.8e-65 253.1 319 58.3
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 3.7e-65 252.7 314 62.4
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 9.1e-64 248.1 307 59.9
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 9.1e-64 248.1 309 59.5
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 1.6e-63 247.3 307 60.9
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 2.0e-63 246.9 307 55.0
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 2.7e-63 246.5 313 57.5
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 2.7e-63 246.5 308 57.8
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 5.9e-63 245.4 315 63.5
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 1.3e-62 244.2 317 61.5
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 2.9e-62 243.0 312 60.3
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 8.5e-62 241.5 312 60.6
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 1.9e-61 240.4 313 60.1
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 3.2e-61 239.6 395 46.8
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 5.5e-61 238.8 315 61.3
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 9.4e-61 238.0 304 61.8
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 2.1e-60 236.9 314 62.4
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 3.6e-60 236.1 331 54.7
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 6.1e-60 235.3 321 49.5
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 8.0e-60 235.0 310 59.4
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 1.0e-59 234.6 305 61.3
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 4.0e-59 232.6 301 60.1
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 6.8e-59 231.9 329 54.4
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.2e-58 231.1 302 59.6
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.0e-58 230.3 299 63.5
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 5.7e-58 228.8 311 62.1
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 8.3e-57 224.9 300 53.0
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.1e-56 224.6 300 53.0
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 1.1e-56 224.6 300 64.7
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 1.1e-56 224.6 301 55.1
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 7.0e-56 221.9 317 58.7
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 1.2e-55 221.1 309 63.4
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 2.7e-55 219.9 311 51.4
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 3.5e-55 219.5 310 57.4
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 4.2e-53 212.6 299 51.5
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 7.2e-53 211.8 233 62.7
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 9.4e-53 211.5 261 54.0
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 1.0e-51 208.0 303 51.8
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 1.8e-51 207.2 300 57.7
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 3.4e-50 203.0 318 50.0
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 4.4e-50 202.6 298 55.4
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 1.3e-49 201.1 305 53.1
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.4e-48 197.6 318 52.2
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 1.6e-47 194.1 296 57.8
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.0e-46 191.4 225 60.9
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 2.3e-46 190.3 207 63.3
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 1.9e-45 187.2 125 71.2
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 2.8e-44 183.3 130 68.5
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 4.0e-43 179.5 242 64.9
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.3e-41 174.5 130 67.7
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 2.0e-39 167.2 307 46.9
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 5.9e-39 165.6 288 45.5
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 2.8e-36 156.8 131 61.8
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 2.3e-35 153.7 317 43.5
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 3.1e-35 153.3 103 72.8
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 4.0e-35 152.9 263 50.6
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 6.8e-35 152.1 223 59.2
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 2.4e-32 143.7 327 46.2
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 3.9e-30 136.3 334 48.5
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 5.0e-30 136.0 223 48.0
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 9.5e-29 131.7 329 43.8
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 2.8e-28 130.2 100 62.0
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 4.7e-28 129.4 131 67.9
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 5.8e-26 122.5 82 81.7
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 7.5e-26 122.1 316 35.8
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 4.1e-24 116.3 89 73.0
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 5.4e-24 115.9 336 44.6
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 5.4e-24 115.9 78 76.9
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 2.3e-22 110.5 89 67.4
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.2e-20 104.8 90 65.6
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 8.1e-20 102.1 201 61.7
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 8.9e-19 98.6 68 73.5
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.2e-18 98.2 63 76.2
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 2.9e-17 93.6 76 68.4
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.1e-16 91.7 114 51.8
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 1.6e-15 87.8 86 48.8
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 8.6e-14 82.0 211 36.5
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 1.1e-13 81.6 83 56.6
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 4.3e-13 79.7 87 55.2
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 5.6e-13 79.3 44 90.9
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 1.2e-12 78.2 64 54.7
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 4.7e-12 76.3 302 41.4
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.6e-10 70.5 83 50.6
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 4.6e-07 59.7 75 53.3
SEGI_25865 Sequoiadendron giganteum HOM05D000010 ORTHO05D004484 6.0e-07 59.3 71 49.3
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 1.0e-06 58.5 263 48.7


User provided reference genes

Program Settings