Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 5.0e-42 174.1 92 100.0
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.2e-40 169.5 92 96.7
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 7.4e-38 160.2 84 100.0
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.4e-36 156.0 85 96.5
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 5.5e-33 144.1 95 85.3
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 5.9e-27 124.0 78 84.6
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 4.2e-25 117.9 78 80.8
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 1.0e-23 113.2 109 61.5
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 7.5e-22 107.1 106 62.3
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 9.8e-22 106.7 107 61.7
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 2.2e-21 105.5 98 66.3
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 2.2e-21 105.5 98 66.3
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 4.8e-21 104.4 107 59.8
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 7.0e-20 100.5 102 59.8
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 2.7e-19 98.6 99 60.6
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 3.5e-19 98.2 102 61.8
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 3.5e-19 98.2 102 58.8
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 3.5e-19 98.2 87 65.5
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 4.5e-19 97.8 103 59.2
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 5.9e-19 97.4 68 73.5
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 5.9e-19 97.4 72 68.1
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 1.0e-18 96.7 99 54.5
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 1.0e-18 96.7 68 72.1
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 1.0e-18 96.7 100 56.0
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.3e-18 96.3 99 57.6
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 2.2e-18 95.5 68 70.6
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 3.8e-18 94.7 100 55.0
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 1.1e-17 93.2 68 69.1
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 1.1e-17 93.2 99 55.6
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.1e-17 93.2 99 56.6
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.5e-17 92.8 98 55.1
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 3.2e-17 91.7 88 54.5
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 3.2e-17 91.7 93 54.8
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 4.2e-17 91.3 100 52.0
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 5.5e-17 90.9 99 54.5
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 5.5e-17 90.9 89 56.2
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 5.5e-17 90.9 68 66.2
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 9.5e-17 90.1 100 52.0
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 1.2e-16 89.7 100 52.0
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 1.6e-16 89.4 98 53.1
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 2.1e-16 89.0 100 52.0
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 2.1e-16 89.0 98 53.1
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 2.8e-16 88.6 87 56.3
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 2.8e-16 88.6 89 56.2
RcHm_v2.0_Chr7g0230041 Rosa chinensis HOM05D004289 ORTHO05D005141 3.6e-16 88.2 61 72.1
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 4.7e-16 87.8 98 53.1
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 4.7e-16 87.8 98 53.1
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 4.7e-16 87.8 77 55.8
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 4.7e-16 87.8 100 50.0
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 6.1e-16 87.4 74 59.5
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 6.1e-16 87.4 90 55.6
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 8.0e-16 87.0 63 71.4
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 8.0e-16 87.0 100 49.0
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 8.0e-16 87.0 97 55.7
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.0e-15 86.7 99 54.5
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 1.4e-15 86.3 93 53.8
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 1.8e-15 85.9 102 47.1
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 2.3e-15 85.5 97 51.5
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 3.0e-15 85.1 70 61.4
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 3.0e-15 85.1 98 49.0
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 3.0e-15 85.1 98 49.0
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 5.2e-15 84.3 94 55.3
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 6.8e-15 84.0 68 63.2
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 8.8e-15 83.6 83 51.8
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 8.8e-15 83.6 95 52.6
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 8.8e-15 83.6 93 52.7
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 1.2e-14 83.2 97 51.5
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.5e-14 82.8 89 52.8
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 1.5e-14 82.8 94 50.0
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 1.5e-14 82.8 61 68.9
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 1.5e-14 82.8 98 48.0
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.5e-14 82.8 86 53.5
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.5e-14 82.8 97 53.6
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 2.0e-14 82.4 94 48.9
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 2.0e-14 82.4 99 49.5
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 2.0e-14 82.4 77 54.5
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 2.0e-14 82.4 91 52.7
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 2.6e-14 82.0 76 60.5
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 2.6e-14 82.0 87 52.9
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 2.6e-14 82.0 89 50.6
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 3.4e-14 81.6 92 48.9
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 3.4e-14 81.6 99 48.5
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 3.4e-14 81.6 65 63.1
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 3.4e-14 81.6 90 47.8
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 4.4e-14 81.3 54 72.2
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 4.4e-14 81.3 72 55.6
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 4.4e-14 81.3 73 57.5
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 4.4e-14 81.3 87 51.7
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 4.4e-14 81.3 94 47.9
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 4.4e-14 81.3 86 51.2
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 5.7e-14 80.9 78 59.0
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 5.7e-14 80.9 102 49.0
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 5.7e-14 80.9 74 56.8
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 7.5e-14 80.5 108 47.2
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 9.8e-14 80.1 80 57.5
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 1.7e-13 79.3 73 57.5
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 1.7e-13 79.3 92 52.2
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 2.2e-13 79.0 103 46.6
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 2.2e-13 79.0 94 47.9
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 2.2e-13 79.0 97 50.5
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.2e-13 79.0 103 45.6
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 2.2e-13 79.0 100 48.0
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 2.2e-13 79.0 92 47.8
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 2.2e-13 79.0 75 56.0
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 4.9e-13 77.8 63 63.5
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 8.3e-13 77.0 94 50.0
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 8.3e-13 77.0 100 48.0
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 1.1e-12 76.6 54 66.7
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 1.1e-12 76.6 54 66.7
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 1.1e-12 76.6 98 45.9
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.1e-12 76.6 88 51.1
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 1.4e-12 76.3 54 66.7
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 1.8e-12 75.9 71 50.7
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 1.8e-12 75.9 71 50.7
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 2.4e-12 75.5 84 47.6
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.4e-12 75.5 68 55.9
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 3.1e-12 75.1 96 49.0
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 4.1e-12 74.7 79 51.9
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 7.0e-12 73.9 100 44.0
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 1.2e-11 73.2 97 48.5
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 1.6e-11 72.8 48 70.8
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.6e-11 72.8 60 66.7
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 2.0e-11 72.4 69 55.1
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 2.0e-11 72.4 70 55.7
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 2.7e-11 72.0 53 66.0
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 3.5e-11 71.6 73 49.3
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 5.9e-11 70.9 94 48.9
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 1.0e-10 70.1 44 72.7
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 1.7e-10 69.3 68 48.5
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.7e-10 69.3 83 49.4
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 2.3e-10 68.9 53 58.5
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 3.8e-10 68.2 65 50.8
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 5.0e-10 67.8 67 40.3
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 8.6e-10 67.0 99 44.4
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 1.9e-09 65.9 70 48.6
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 3.3e-09 65.1 36 83.3
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 4.3e-09 64.7 37 78.4
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 4.3e-09 64.7 53 60.4
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 7.3e-09 63.9 98 43.9
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 2.8e-08 62.0 40 70.0
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 8.0e-08 60.5 40 65.0
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 8.0e-08 60.5 40 65.0
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 8.0e-08 60.5 40 65.0
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.0e-07 60.1 32 84.4
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.0e-07 60.1 74 48.6
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 1.8e-07 59.3 61 59.0
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 2.3e-07 58.9 88 40.9
FAN08G1828 Fragaria x ananassa HOM05D004289 ORTHO05D206118 3.0e-07 58.5 27 100.0
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 3.0e-07 58.5 69 40.6
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 3.0e-07 58.5 90 38.9
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 3.0e-07 58.5 53 50.9
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 5.2e-07 57.8 77 44.2
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 5.2e-07 57.8 69 44.9
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 5.2e-07 57.8 69 42.0
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 8.9e-07 57.0 69 43.5
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 8.9e-07 57.0 88 42.0
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 8.9e-07 57.0 80 38.8
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 1.2e-06 56.6 100 39.0
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 2.0e-06 55.8 90 37.8
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 2.6e-06 55.5 82 41.5
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 3.4e-06 55.1 69 42.0
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 3.4e-06 55.1 76 43.4
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 3.4e-06 55.1 61 54.1
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.4e-06 54.7 74 40.5
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.4e-06 54.7 74 40.5
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 4.4e-06 54.7 68 42.6
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 4.4e-06 54.7 69 39.1
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 5.7e-06 54.3 49 59.2
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 5.7e-06 54.3 70 45.7
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 5.7e-06 54.3 70 45.7
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 5.7e-06 54.3 70 45.7
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 5.7e-06 54.3 75 44.0
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 5.7e-06 54.3 31 80.6
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 5.7e-06 54.3 82 41.5
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 5.7e-06 54.3 90 40.0
QL11p051756 Quercus lobata HOM05D004289 ORTHO05D005141 5.7e-06 54.3 73 49.3
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 7.5e-06 53.9 73 38.4
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 7.5e-06 53.9 76 42.1
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 7.5e-06 53.9 59 50.8
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 9.8e-06 53.5 30 83.3
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 9.8e-06 53.5 30 83.3


User provided reference genes

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