Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g32290 Fragaria vesca HOM05D006728 ORTHO05D007911 0.0e+00 1517.7 768 100.0
FAN18G3195 Fragaria x ananassa HOM05D006728 ORTHO05D007911 0.0e+00 1504.2 768 99.2
FAN13G2633 Fragaria x ananassa HOM05D006728 ORTHO05D007911 0.0e+00 1431.8 768 94.1
FAN08G1230 Fragaria x ananassa HOM05D006728 ORTHO05D007911 0.0e+00 1427.9 768 94.1
FAN04G0014 Fragaria x ananassa HOM05D006728 ORTHO05D007911 0.0e+00 1410.6 768 93.5
RcHm_v2.0_Chr7g0228481 Rosa chinensis HOM05D006728 ORTHO05D007911 0.0e+00 1201.0 765 80.8
MD15G1410500 Malus domestica HOM05D006728 ORTHO05D007911 7.7e-237 824.3 784 58.4
CiPaw.03G020000 Carya illinoinensis HOM05D006728 ORTHO05D007911 2.0e-181 640.2 765 49.8
Prupe.1G552000 Prunus persica HOM05D006728 ORTHO05D007911 2.9e-175 619.8 549 62.8
Dinv41739 Davidia involucrata HOM05D006728 ORTHO05D007911 1.6e-173 614.0 758 48.3
QL09p005234 Quercus lobata HOM05D006728 ORTHO05D007911 1.1e-163 581.3 760 46.1
Hma1.2p1_0705F.1_g206940 Hydrangea macrophylla HOM05D006728 ORTHO05D007911 5.8e-152 542.3 789 44.6
Haze_13898 Corylus avellana HOM05D006728 ORTHO05D007911 7.6e-152 542.0 766 46.7
Sabra04G0084300 Salix brachista HOM05D006728 ORTHO05D007911 1.0e-148 531.6 749 43.4
Sed0021340 Sechium edule HOM05D006728 ORTHO05D007911 3.9e-148 529.6 738 44.0
Manes.01G125500 Manihot esculenta HOM05D006728 ORTHO05D007911 8.7e-148 528.5 761 42.8
Gohir.D05G252600 Gossypium hirsutum HOM05D006728 ORTHO05D007911 1.3e-146 524.6 782 42.1
ClCG08G000330 Citrullus lanatus HOM05D006728 ORTHO05D007911 2.8e-146 523.5 733 43.5
Potri.004G133900 Populus trichocarpa HOM05D006728 ORTHO05D007911 1.4e-145 521.2 746 43.4
COL.COLO4_24796 Corchorus olitorius HOM05D006728 ORTHO05D007911 6.9e-145 518.8 752 42.6
Gorai.009G264600 Gossypium raimondii HOM05D006728 ORTHO05D007911 1.2e-144 518.1 784 41.8
GSVIVG01012775001 Vitis vinifera HOM05D006728 ORTHO05D007911 1.5e-144 517.7 711 44.7
Actinidia23017 Actinidia chinensis HOM05D006728 ORTHO05D007911 4.9e-143 512.7 766 43.7
Gohir.A05G251200 Gossypium hirsutum HOM05D006728 ORTHO05D007911 4.6e-141 506.1 722 42.9
Atru.chr13.2383 Acer truncatum HOM05D006728 ORTHO05D007911 7.9e-141 505.4 752 42.8
TAR381G1619 Trochodendron aralioides HOM05D006728 ORTHO05D007911 5.1e-140 502.7 789 41.2
CsaV3_5G040430 Cucumis sativus L. HOM05D006728 ORTHO05D007911 6.7e-140 502.3 732 42.8
CSS0015483 Camellia sinensis var. sinensis HOM05D006728 ORTHO05D007911 1.4e-137 494.6 742 43.7
MELO3C022215.2 Cucumis melo HOM05D006728 ORTHO05D007911 1.8e-137 494.2 752 42.7
Ciclev10004396m.g Citrus clementina HOM05D006728 ORTHO05D007911 3.1e-137 493.4 763 42.5
Rhsim10G0109300 Rhododendron simsii HOM05D006728 ORTHO05D007911 8.4e-135 485.3 666 45.8
vmacro12473 Vaccinium macrocarpon HOM05D006728 ORTHO05D007911 3.2e-134 483.4 803 41.0
TWI59G0071 Tripterygium wilfordii HOM05D006728 ORTHO05D007911 2.1e-125 454.1 738 39.8
TWI23G0528 Tripterygium wilfordii HOM05D006728 ORTHO05D007911 2.2e-122 444.1 743 39.6
PGR044G1487 Punica granatum HOM05D006728 ORTHO05D007911 1.2e-117 428.3 706 40.5
Nn1g02058 Nelumbo nucifera HOM05D006728 ORTHO05D007911 3.0e-116 423.7 765 38.2
CAN.G102.5 Capsicum annuum HOM05D006728 ORTHO05D007911 2.0e-115 421.0 760 37.4
Cc10_g10290 Coffea canephora HOM05D006728 ORTHO05D007911 1.3e-114 418.3 758 37.6
PGSC0003DMG400009266 Solanum tuberosum HOM05D006728 ORTHO05D007911 2.8e-114 417.2 757 37.1
THA.LOC104799928 Tarenaya hassleriana HOM05D006728 ORTHO05D007911 3.7e-114 416.8 797 37.0
Glyma.02G174700 Glycine max HOM05D006728 ORTHO05D007911 2.0e-112 411.0 700 39.6
Eucgr.J01411 Eucalyptus grandis HOM05D006728 ORTHO05D007911 7.7e-112 409.1 670 41.6
Peaxi162Scf00391g00619 Petunia axillaris HOM05D006728 ORTHO05D007911 5.5e-110 402.9 749 37.4
Sopen11g011050 Solanum pennellii HOM05D006728 ORTHO05D007911 4.7e-109 399.8 758 36.3
MSTRG.1553 Avicennia marina HOM05D006728 ORTHO05D007911 2.0e-104 384.4 760 36.4
Migut.C01293 Erythranthe guttata HOM05D006728 ORTHO05D007911 7.7e-104 382.5 767 37.7
Oeu051790.1 Olea europaea HOM05D006728 ORTHO05D007911 6.5e-103 379.4 734 38.7
Nitab4.5_0000365g0060 Nicotiana tabacum HOM05D006728 ORTHO05D007911 2.3e-100 370.9 766 36.0
SalBow7G3045 Salvia bowleyana HOM05D006728 ORTHO05D007911 3.0e-100 370.5 746 35.9
Psat6g140120 Pisum sativum HOM05D006728 ORTHO05D007911 1.5e-99 368.2 698 37.2
Ca_09788_v3 Cicer arietinum L. HOM05D006728 ORTHO05D007911 2.6e-99 367.5 702 36.2
VMungo0720G2132 Vigna mungo HOM05D006728 ORTHO05D007911 1.7e-98 364.8 704 37.1
Lalb_Chr21g0312581 Lupinus albus HOM05D006728 ORTHO05D007911 3.1e-97 360.5 565 41.2
Phvul.L001685 Phaseolus vulgaris HOM05D006728 ORTHO05D007911 1.3e-95 355.1 704 36.8
Medtr1g072850 Medicago truncatula HOM05D006728 ORTHO05D007911 1.9e-94 351.3 693 36.9
Lj5g0018420 Lotus japonicus HOM05D006728 ORTHO05D007911 5.5e-94 349.7 562 40.7
Migut.J01202 Erythranthe guttata HOM05D006728 ORTHO05D007911 1.2e-93 348.6 641 38.4
Thecc.03G072600 Theobroma cacao HOM05D006728 ORTHO05D007911 1.2e-93 348.6 478 45.8
Glyma.10G191500 Glycine max HOM05D006728 ORTHO05D007911 1.8e-92 344.7 591 38.6
ECA232G4554 Erigeron canadensis HOM05D006728 ORTHO05D007911 2.4e-89 334.3 700 35.6
AT4G27510 Arabidopsis thaliana HOM05D006728 ORTHO05D007911 9.1e-89 332.4 799 33.4
Cpa.g.c30412.3 Carica papaya HOM05D006728 ORTHO05D007911 3.5e-88 330.5 488 42.8
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 3.5e-88 330.5 732 34.2
Lsat_1_v5_gn_4_133160 Lactuca sativa HOM05D006728 ORTHO05D007911 5.0e-87 326.6 785 34.1
unitig_749.g13882 Utricularia gibba HOM05D006728 ORTHO05D007911 1.9e-86 324.7 761 33.1
Sp7g25450 Schrenkiella parvula HOM05D006728 ORTHO05D007911 2.5e-86 324.3 802 34.4
CARHR235190 Cardamine hirsuta HOM05D006728 ORTHO05D007911 3.2e-86 323.9 765 33.5
DCAR_011523 Daucus carota HOM05D006728 ORTHO05D007911 1.7e-82 311.6 797 31.4
HanXRQChr17g0559021 Helianthus annuus HOM05D006728 ORTHO05D007911 2.8e-82 310.8 760 33.2
BolC1t02321H Brassica oleracea HOM05D006728 ORTHO05D007911 6.3e-82 309.7 788 33.6
C01p23690 Brassica napus HOM05D006728 ORTHO05D007911 8.3e-82 309.3 788 33.5
Aa31LG5G9990 Aethionema arabicum HOM05D006728 ORTHO05D007911 1.1e-81 308.9 806 32.8
TPR.G18562 Trifolium pratense HOM05D006728 ORTHO05D007911 1.4e-81 308.5 709 34.0
Thhalv10024534m.g Eutrema salsugineum HOM05D006728 ORTHO05D007911 7.0e-81 306.2 771 32.7
Nitab4.5_0004437g0010 Nicotiana tabacum HOM05D006728 ORTHO05D007911 1.2e-80 305.4 658 35.9
Carub.0007s1334 Capsella rubella HOM05D006728 ORTHO05D007911 3.5e-80 303.9 773 33.5
PSO144G0035 Papaver somniferum HOM05D006728 ORTHO05D007911 5.9e-80 303.1 744 32.8
arahy.Tifrunner.gnm1.ann1.2Y318K Arachis hypogaea HOM05D006728 ORTHO05D007911 4.2e-78 297.0 718 33.6
A01p18730 Brassica napus HOM05D006728 ORTHO05D007911 2.1e-77 294.7 781 32.7
BraA01t01819Z Brassica rapa HOM05D006728 ORTHO05D007911 2.8e-77 294.3 787 33.2
Aqoxy7G02767 Aquilegia oxysepala HOM05D006728 ORTHO05D007911 4.0e-76 290.4 744 33.5
PSO325G0011 Papaver somniferum HOM05D006728 ORTHO05D007911 2.6e-75 287.7 679 33.7
Solyc11g020910.3 Solanum lycopersicum HOM05D006728 ORTHO05D007911 2.0e-72 278.1 514 36.4
arahy.Tifrunner.gnm1.ann1.PFS1J6 Arachis hypogaea HOM05D006728 ORTHO05D007911 9.5e-70 269.2 542 36.9
arahy.Tifrunner.gnm1.ann1.HTR7VF Arachis hypogaea HOM05D006728 ORTHO05D007911 1.8e-68 265.0 527 37.0
arahy.Tifrunner.gnm1.ann1.SM6YYV Arachis hypogaea HOM05D006728 ORTHO05D007911 4.0e-68 263.8 543 36.8
BcaNung07241 Brassica carinata HOM05D006728 ORTHO05D007911 1.2e-67 262.3 787 31.1
ATR0487G015 Amborella trichopoda HOM05D006728 ORTHO05D007911 4.9e-66 256.9 700 29.9
Hund02381 Selenicereus undatus HOM05D006728 ORTHO05D007911 7.0e-65 253.1 772 31.7
PSO325G0006 Papaver somniferum HOM05D006728 ORTHO05D007911 9.2e-65 252.7 608 34.2
Sc24g0002590 Simmondsia chinensis HOM05D006728 ORTHO05D007911 6.6e-63 246.5 713 32.0
Atru.chr1.2802 Acer truncatum HOM05D006728 ORTHO05D007911 9.8e-59 232.6 366 41.3
SHI29298 Sapria himalayana HOM05D006728 ORTHO05D007911 2.2e-58 231.5 552 34.2
PSO170G3307 Papaver somniferum HOM05D006728 ORTHO05D007911 2.4e-57 228.0 740 29.7
Nn3g16574 Nelumbo nucifera HOM05D006728 ORTHO05D007911 3.6e-53 214.2 756 28.4
AUR62037055 Chenopodium quinoa HOM05D006728 ORTHO05D007911 5.8e-51 206.8 742 29.8
EL10Ac7g16629 Beta vulgaris HOM05D006728 ORTHO05D007911 3.7e-50 204.1 723 28.2
AUR62036525 Chenopodium quinoa HOM05D006728 ORTHO05D007911 4.2e-41 174.1 644 30.0
PSO170G3890 Papaver somniferum HOM05D006728 ORTHO05D007911 1.2e-40 172.6 407 33.4
RcHm_v2.0_Chr5g0040361 Rosa chinensis HOM05D006728 ORTHO05D007911 2.1e-37 161.8 101 78.2
SEGI_13662 Sequoiadendron giganteum HOM05D013057 ORTHO05D007911 1.6e-29 135.6 741 24.4
HPP92_000129 Vanilla planifolia HOM05D006728 ORTHO05D007911 3.6e-29 134.4 695 24.0
Prupe.8G015600 Prunus persica HOM05D025481 ORTHO05D007911 4.8e-29 134.0 308 37.0
Cpa.g.c34985.1 Carica papaya HOM05D006728 ORTHO05D007911 9.9e-27 126.3 281 33.5
arahy.Tifrunner.gnm1.ann1.G54CSB Arachis hypogaea HOM05D006728 ORTHO05D007911 3.2e-25 121.3 289 35.6
Atru.chr1.2803 Acer truncatum HOM05D006728 ORTHO05D007911 4.6e-24 117.5 140 49.3
Cfa008144 Carpinus fangiana HOM05D006728 ORTHO05D007911 1.1e-20 106.3 101 50.5
TPR.G18439 Trifolium pratense HOM05D006728 ORTHO05D007911 1.8e-20 105.5 128 48.4
Os02g0461200 Oryza sativa ssp. japonica HOM05D006728 ORTHO05D007911 1.3e-18 99.4 547 25.8
Glyma.20G198666 Glycine max HOM05D006728 ORTHO05D007911 6.5e-18 97.1 170 39.4
Zm00001eb295040 Zea mays HOM05D006728 ORTHO05D007911 1.9e-14 85.5 560 24.6
Glyma.20G198732 Glycine max HOM05D006728 ORTHO05D007911 4.3e-14 84.3 151 37.1
CDE05G2798 Ceratophyllum demersum HOM05D006728 ORTHO05D007911 5.3e-12 77.4 126 38.9
SHI29297 Sapria himalayana HOM05D006728 ORTHO05D007911 2.2e-10 72.0 72 44.4
SEGI_13134 Sequoiadendron giganteum HOM05D013057 ORTHO05D007911 1.2e-08 66.2 267 26.6
Aqoxy1G01188 Aquilegia oxysepala HOM05D006728 ORTHO05D007911 4.3e-06 57.8 65 47.7


User provided reference genes

Program Settings