Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 4.1e-40 167.5 81 100.0
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.5e-37 159.1 80 93.8
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 6.1e-36 153.7 79 92.4
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 1.0e-35 152.9 79 89.9
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 3.0e-35 151.4 79 89.9
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 5.7e-34 147.1 81 88.9
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 2.5e-29 131.7 79 82.3
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 1.7e-25 119.0 81 72.8
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.8e-24 115.5 80 67.5
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 2.4e-24 115.2 80 67.5
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.4e-24 115.2 80 67.5
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 5.9e-23 110.5 78 71.8
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 5.9e-23 110.5 78 71.8
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 5.9e-23 110.5 80 68.8
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 2.1e-20 102.1 80 68.8
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 1.4e-19 99.4 64 71.9
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 3.7e-17 91.3 76 56.6
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 8.3e-17 90.1 75 57.3
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 1.9e-16 89.0 74 63.5
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 3.2e-16 88.2 74 56.8
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 4.1e-16 87.8 74 60.8
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 4.1e-16 87.8 75 58.7
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 4.1e-16 87.8 60 68.3
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 9.2e-16 86.7 78 57.7
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 1.6e-15 85.9 70 58.6
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 2.7e-15 85.1 76 55.3
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 2.7e-15 85.1 71 60.6
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 2.7e-15 85.1 71 60.6
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 4.6e-15 84.3 73 50.7
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 4.6e-15 84.3 75 56.0
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 1.0e-14 83.2 70 57.1
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 2.3e-14 82.0 70 55.7
Haze_21294 Corylus avellana HOM05D007628 ORTHO05D007342 5.0e-14 80.9 85 52.9
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 6.6e-14 80.5 73 58.9
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 8.6e-14 80.1 76 56.6
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 1.1e-13 79.7 75 53.3
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 1.1e-13 79.7 75 54.7
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 1.5e-13 79.3 64 60.9
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 1.9e-13 79.0 75 54.7
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 3.3e-13 78.2 71 60.6
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 3.3e-13 78.2 71 60.6
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 5.6e-13 77.4 72 55.6
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 2.1e-12 75.5 73 57.5
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 2.1e-12 75.5 58 58.6
Cc10_g10210 Coffea canephora HOM05D007628 ORTHO05D007342 4.7e-12 74.3 79 49.4
unitig_8.g5066 Utricularia gibba HOM05D007628 ORTHO05D007342 6.2e-12 73.9 71 46.5
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 2.3e-11 72.0 79 50.6
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 3.1e-11 71.6 72 50.0
Cc10_g10240 Coffea canephora HOM05D007628 ORTHO05D007342 4.0e-11 71.2 76 51.3
Lalb_Chr01g0016231 Lupinus albus HOM05D007628 ORTHO05D007342 4.0e-11 71.2 54 57.4
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 5.2e-11 70.9 73 53.4
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 6.8e-11 70.5 74 52.7
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 8.9e-11 70.1 78 51.3
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 2.6e-10 68.6 78 50.0
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 4.4e-10 67.8 88 48.9
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 4.4e-10 67.8 81 46.9
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 5.8e-10 67.4 71 50.7
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 7.5e-10 67.0 78 48.7
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 9.9e-10 66.6 74 45.9
unitig_578.g16589 Utricularia gibba HOM05D007628 ORTHO05D007342 9.9e-10 66.6 74 44.6
CAN.G201.40 Capsicum annuum HOM05D008200 ORTHO05D007342 1.7e-09 65.9 78 51.3
Peaxi162Scf00071g00049 Petunia axillaris HOM05D008200 ORTHO05D007342 1.7e-09 65.9 83 49.4
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 2.9e-09 65.1 63 50.8
TPR.G34171 Trifolium pratense HOM05D007628 ORTHO05D007342 2.9e-09 65.1 65 52.3
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 3.7e-09 64.7 76 50.0
unitig_578.g16588 Utricularia gibba HOM05D007628 ORTHO05D007342 4.9e-09 64.3 54 48.1
Peaxi162Scf00391g00074 Petunia axillaris HOM05D008200 ORTHO05D007342 6.4e-09 63.9 68 52.9
Sopen07g028650 Solanum pennellii HOM05D008200 ORTHO05D010849 6.4e-09 63.9 78 47.4
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 8.3e-09 63.5 82 45.1
PGSC0003DMG400018328 Solanum tuberosum HOM05D008200 ORTHO05D007342 8.3e-09 63.5 72 48.6
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 1.4e-08 62.8 56 53.6
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 1.4e-08 62.8 75 45.3
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 1.9e-08 62.4 85 42.4
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 1.9e-08 62.4 80 43.8
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 4.1e-08 61.2 71 42.3
CAN.G201.41 Capsicum annuum HOM05D008200 ORTHO05D007342 4.1e-08 61.2 79 49.4
Solyc07g054720.2 Solanum lycopersicum HOM05D008200 ORTHO05D007342 5.4e-08 60.8 78 44.9
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 7.1e-08 60.5 70 52.9
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 9.2e-08 60.1 85 41.2
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 9.2e-08 60.1 68 47.1
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 9.2e-08 60.1 74 43.2
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 9.2e-08 60.1 67 47.8
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 1.2e-07 59.7 76 44.7
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 1.2e-07 59.7 46 58.7
Peaxi162Scf00391g00730 Petunia axillaris HOM05D008200 ORTHO05D007342 1.2e-07 59.7 75 45.3
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 2.1e-07 58.9 80 42.5
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 3.5e-07 58.2 53 50.9
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 4.6e-07 57.8 67 43.3
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 4.6e-07 57.8 74 43.2
unitig_8.g5068 Utricularia gibba HOM05D007628 ORTHO05D007342 4.6e-07 57.8 49 51.0
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 6.0e-07 57.4 71 40.8
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 6.0e-07 57.4 75 40.0
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 7.8e-07 57.0 69 42.0
Peaxi162Scf00391g00729 Petunia axillaris HOM05D008200 ORTHO05D007342 7.8e-07 57.0 82 41.5
Peaxi162Scf00071g00425 Petunia axillaris HOM05D008200 ORTHO05D007342 1.3e-06 56.2 77 42.9
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 3.0e-06 55.1 74 43.2
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 3.0e-06 55.1 74 43.2
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 3.0e-06 55.1 74 43.2
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 3.9e-06 54.7 74 43.2
CAN.G861.41 Capsicum annuum HOM05D008200 ORTHO05D010849 8.6e-06 53.5 54 50.0
Sopen03g029540 Solanum pennellii HOM05D008200 ORTHO05D010849 8.6e-06 53.5 54 55.6
PGSC0003DMG400015290 Solanum tuberosum HOM05D008200 ORTHO05D010849 8.6e-06 53.5 54 53.7


User provided reference genes

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