Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 6.8e-43 176.8 82 100.0
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.7e-33 145.6 78 92.3
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.7e-33 145.6 78 92.3
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 8.4e-25 116.7 80 68.8
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.1e-24 116.3 78 73.1
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 1.4e-24 115.9 78 73.1
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.4e-24 115.9 78 73.1
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 8.7e-22 106.7 82 64.6
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 8.7e-22 106.7 82 64.6
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.1e-21 106.3 79 68.4
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 1.9e-21 105.5 78 69.2
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 9.6e-21 103.2 80 68.8
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 1.4e-19 99.4 71 67.6
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.4e-19 98.6 70 68.6
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 4.5e-18 94.4 82 58.5
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 1.3e-17 92.8 64 68.8
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 1.3e-17 92.8 72 58.3
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 4.9e-17 90.9 71 56.3
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 1.1e-16 89.7 71 56.3
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 4.2e-16 87.8 60 71.7
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 1.2e-15 86.3 74 54.1
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 1.6e-15 85.9 72 54.2
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 7.9e-15 83.6 71 57.7
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 1.0e-14 83.2 72 54.2
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 1.8e-14 82.4 68 58.8
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 1.8e-14 82.4 68 58.8
unitig_8.g5066 Utricularia gibba HOM05D007628 ORTHO05D007342 5.1e-14 80.9 70 50.0
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 8.7e-14 80.1 69 52.2
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 1.1e-13 79.7 67 58.2
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 1.9e-13 79.0 68 50.0
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 1.9e-13 79.0 68 58.8
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 1.9e-13 79.0 68 58.8
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 7.4e-13 77.0 62 58.1
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 7.4e-13 77.0 87 46.0
Cc00_g22140 Coffea canephora HOM05D007628 ORTHO05D007342 7.4e-13 77.0 72 50.0
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 9.6e-13 76.6 73 54.8
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 1.6e-12 75.9 69 56.5
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 1.6e-12 75.9 69 56.5
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 1.6e-12 75.9 74 52.7
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 2.1e-12 75.5 72 52.8
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 2.1e-12 75.5 55 65.5
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 3.7e-12 74.7 87 44.8
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.1e-11 73.2 65 55.4
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 3.1e-11 71.6 72 51.4
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 9.0e-11 70.1 50 60.0
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 9.0e-11 70.1 71 47.9
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 9.0e-11 70.1 70 45.7
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 1.2e-10 69.7 69 47.8
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 1.5e-10 69.3 68 54.4
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 2.0e-10 68.9 65 52.3
Haze_21294 Corylus avellana HOM05D007628 ORTHO05D007342 2.0e-10 68.9 74 45.9
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 3.4e-10 68.2 65 53.8
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 4.5e-10 67.8 64 53.1
unitig_8.g5068 Utricularia gibba HOM05D007628 ORTHO05D007342 4.5e-10 67.8 71 45.1
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 5.8e-10 67.4 62 53.2
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 7.6e-10 67.0 51 51.0
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 1.3e-09 66.2 51 58.8
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 1.7e-09 65.9 68 48.5
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 2.9e-09 65.1 69 49.3
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 3.8e-09 64.7 68 47.1
Peaxi162Scf00071g00049 Petunia axillaris HOM05D008200 ORTHO05D007342 3.8e-09 64.7 72 47.2
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 3.8e-09 64.7 66 50.0
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 5.0e-09 64.3 77 44.2
EL10Ac1g00115 Beta vulgaris HOM05D007628 ORTHO05D007342 6.5e-09 63.9 89 39.3
unitig_578.g16589 Utricularia gibba HOM05D007628 ORTHO05D007342 6.5e-09 63.9 83 39.8
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 1.1e-08 63.2 70 45.7
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 2.5e-08 62.0 53 54.7
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 2.5e-08 62.0 73 45.2
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 3.2e-08 61.6 60 55.0
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 3.2e-08 61.6 63 50.8
Peaxi162Scf00391g00074 Petunia axillaris HOM05D008200 ORTHO05D007342 5.5e-08 60.8 65 49.2
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 5.5e-08 60.8 69 46.4
Peaxi162Scf00071g00425 Petunia axillaris HOM05D008200 ORTHO05D007342 7.1e-08 60.5 74 44.6
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 1.6e-07 59.3 73 47.9
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 1.6e-07 59.3 67 47.8
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 1.6e-07 59.3 44 61.4
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 1.6e-07 59.3 66 48.5
unitig_578.g16588 Utricularia gibba HOM05D007628 ORTHO05D007342 2.1e-07 58.9 47 53.2
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 2.7e-07 58.5 67 46.3
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 2.7e-07 58.5 44 61.4
FAN18G0675 Fragaria x ananassa HOM05D000564 ORTHO05D001690 2.7e-07 58.5 33 93.9
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 3.5e-07 58.2 48 56.2
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 3.5e-07 58.2 76 44.7
Lalb_Chr01g0016231 Lupinus albus HOM05D007628 ORTHO05D007342 4.6e-07 57.8 40 60.0
SHI05836 Sapria himalayana HOM05D007628 ORTHO05D007342 6.1e-07 57.4 74 35.1
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 6.1e-07 57.4 72 43.1
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 2.3e-06 55.5 67 44.8
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 2.3e-06 55.5 67 44.8
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 2.3e-06 55.5 67 44.8
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 2.3e-06 55.5 72 43.1
CAN.G201.40 Capsicum annuum HOM05D008200 ORTHO05D007342 2.3e-06 55.5 73 45.2
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 3.0e-06 55.1 67 44.8
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 3.0e-06 55.1 68 45.6
SalBow7G0776 Salvia bowleyana HOM05D007628 ORTHO05D007342 6.7e-06 53.9 43 60.5


User provided reference genes

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