Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 5.4e-40 167.2 81 100.0
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 5.4e-40 167.2 81 100.0
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.7e-39 164.9 81 98.8
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 4.0e-27 124.4 79 77.2
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 4.0e-27 124.4 79 77.2
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 1.5e-26 122.5 81 71.6
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 2.2e-25 118.6 81 69.1
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 8.3e-25 116.7 65 80.0
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.1e-24 116.3 82 67.1
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 1.1e-24 116.3 82 69.5
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 1.8e-24 115.5 81 67.9
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 4.1e-24 114.4 80 67.5
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 5.4e-24 114.0 78 73.1
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 1.6e-23 112.5 81 67.9
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 3.5e-23 111.3 80 66.2
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 3.9e-22 107.8 60 81.7
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 8.6e-22 106.7 81 65.4
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 8.0e-20 100.1 77 61.0
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 1.2e-18 96.3 77 59.7
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 1.7e-17 92.4 77 57.1
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 5.4e-16 87.4 76 55.3
Cc00_g22140 Coffea canephora HOM05D007628 ORTHO05D007342 3.5e-15 84.7 74 54.1
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 6.0e-15 84.0 55 67.3
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 6.0e-15 84.0 75 54.7
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 6.0e-15 84.0 66 63.6
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 6.0e-15 84.0 66 63.6
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 6.0e-15 84.0 75 54.7
unitig_8.g5066 Utricularia gibba HOM05D007628 ORTHO05D007342 1.0e-14 83.2 72 51.4
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 2.3e-14 82.0 83 57.8
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 2.3e-14 82.0 74 54.1
Haze_21294 Corylus avellana HOM05D007628 ORTHO05D007342 3.0e-14 81.6 86 51.2
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 3.0e-14 81.6 78 53.8
Cc10_g10210 Coffea canephora HOM05D007628 ORTHO05D007342 8.6e-14 80.1 83 51.8
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 1.5e-13 79.3 71 53.5
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 1.5e-13 79.3 72 54.2
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 3.3e-13 78.2 58 63.8
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 7.3e-13 77.0 74 52.7
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 7.3e-13 77.0 55 69.1
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 7.3e-13 77.0 60 63.3
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 1.2e-12 76.3 74 52.7
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 1.6e-12 75.9 83 49.4
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 1.6e-12 75.9 74 52.7
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 2.8e-12 75.1 87 51.7
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 6.2e-12 73.9 69 50.7
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 6.2e-12 73.9 80 48.8
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 6.2e-12 73.9 74 55.4
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 8.1e-12 73.6 69 53.6
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.4e-11 72.8 76 52.6
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 1.8e-11 72.4 66 59.1
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 1.8e-11 72.4 66 59.1
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 3.1e-11 71.6 76 52.6
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 1.5e-10 69.3 77 44.2
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 2.0e-10 68.9 55 60.0
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 3.4e-10 68.2 70 48.6
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 3.4e-10 68.2 80 51.2
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 3.4e-10 68.2 78 50.0
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 4.4e-10 67.8 73 47.9
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 4.4e-10 67.8 79 45.6
Lalb_Chr01g0016231 Lupinus albus HOM05D007628 ORTHO05D007342 5.8e-10 67.4 67 50.7
unitig_578.g16588 Utricularia gibba HOM05D007628 ORTHO05D007342 9.9e-10 66.6 49 55.1
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 1.3e-09 66.2 71 50.7
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 2.2e-09 65.5 73 50.7
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 2.2e-09 65.5 67 50.7
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 2.9e-09 65.1 79 44.3
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 3.7e-09 64.7 72 52.8
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 6.4e-09 63.9 64 51.6
Peaxi162Scf00071g00049 Petunia axillaris HOM05D008200 ORTHO05D007342 8.3e-09 63.5 72 51.4
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.1e-08 63.2 73 49.3
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 1.4e-08 62.8 79 48.1
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.4e-08 62.8 72 51.4
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 1.9e-08 62.4 76 46.1
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 1.9e-08 62.4 73 49.3
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 4.1e-08 61.2 61 49.2
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 4.1e-08 61.2 84 45.2
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 5.4e-08 60.8 45 64.4
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 5.4e-08 60.8 72 41.7
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 5.4e-08 60.8 47 59.6
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 5.4e-08 60.8 76 46.1
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 7.1e-08 60.5 77 40.3
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 7.1e-08 60.5 75 44.0
Sopen07g028650 Solanum pennellii HOM05D008200 ORTHO05D010849 7.1e-08 60.5 78 44.9
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 1.2e-07 59.7 75 45.3
SalBow7G0776 Salvia bowleyana HOM05D007628 ORTHO05D007342 1.2e-07 59.7 49 59.2
Peaxi162Scf00391g00729 Petunia axillaris HOM05D008200 ORTHO05D007342 1.6e-07 59.3 75 40.0
unitig_8.g5068 Utricularia gibba HOM05D007628 ORTHO05D007342 1.6e-07 59.3 71 40.8
CAN.G201.40 Capsicum annuum HOM05D008200 ORTHO05D007342 2.7e-07 58.5 73 46.6
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 3.5e-07 58.2 81 40.7
Peaxi162Scf00391g00074 Petunia axillaris HOM05D008200 ORTHO05D007342 3.5e-07 58.2 66 48.5
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 3.5e-07 58.2 75 45.3
Peaxi162Scf00071g00425 Petunia axillaris HOM05D008200 ORTHO05D007342 4.6e-07 57.8 75 46.7
CAN.G201.41 Capsicum annuum HOM05D008200 ORTHO05D007342 6.0e-07 57.4 79 44.3
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 6.0e-07 57.4 74 45.9
Peaxi162Scf00391g00730 Petunia axillaris HOM05D008200 ORTHO05D007342 6.0e-07 57.4 74 45.9
unitig_578.g16589 Utricularia gibba HOM05D007628 ORTHO05D007342 6.0e-07 57.4 75 37.3
EL10Ac1g00115 Beta vulgaris HOM05D007628 ORTHO05D007342 7.8e-07 57.0 68 41.2
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 7.8e-07 57.0 75 41.3
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 7.8e-07 57.0 75 41.3
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 7.8e-07 57.0 75 41.3
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 1.0e-06 56.6 72 38.9
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 1.0e-06 56.6 75 41.3
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 3.0e-06 55.1 71 43.7
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 3.9e-06 54.7 68 44.1
Sopen03g029540 Solanum pennellii HOM05D008200 ORTHO05D010849 6.6e-06 53.9 53 52.8


User provided reference genes

Program Settings