Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 1.9e-80 302.4 148 100.0
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 1.0e-65 253.4 151 84.8
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 9.2e-30 134.0 108 68.5
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 9.5e-27 124.0 138 56.5
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 1.6e-26 123.2 152 53.3
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 2.1e-26 122.9 127 56.7
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 2.1e-26 122.9 124 56.5
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 4.7e-26 121.7 115 61.7
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 4.7e-26 121.7 125 56.8
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 2.3e-25 119.4 125 52.8
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 2.3e-25 119.4 123 56.9
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 2.3e-25 119.4 123 56.9
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 5.2e-25 118.2 128 55.5
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 5.2e-25 118.2 123 52.8
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 6.8e-25 117.9 124 50.0
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 6.8e-25 117.9 126 54.8
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 1.5e-24 116.7 106 61.3
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 1.5e-24 116.7 121 52.9
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 3.4e-24 115.5 121 55.4
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 4.4e-24 115.2 127 52.0
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 9.8e-24 114.0 129 51.9
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 1.7e-23 113.2 127 52.8
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 8.3e-23 110.9 121 53.7
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 1.1e-22 110.5 91 61.5
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 5.4e-22 108.2 127 48.8
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 5.4e-22 108.2 124 49.2
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 7.0e-22 107.8 125 53.6
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 1.6e-21 106.7 127 47.2
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 1.6e-21 106.7 89 61.8
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 2.1e-21 106.3 95 54.7
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 2.1e-21 106.3 103 55.3
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 2.7e-21 105.9 102 58.8
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 4.6e-21 105.1 123 47.2
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 6.0e-21 104.8 127 46.5
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 7.8e-21 104.4 106 53.8
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 1.7e-20 103.2 125 51.2
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 1.7e-20 103.2 102 55.9
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 2.3e-20 102.8 124 46.0
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 3.0e-20 102.4 81 61.7
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 3.0e-20 102.4 81 61.7
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 3.9e-20 102.1 59 78.0
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 6.6e-20 101.3 74 62.2
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 5.6e-19 98.2 119 49.6
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 9.5e-19 97.4 108 50.0
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 1.2e-18 97.1 129 45.7
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 2.8e-18 95.9 61 72.1
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 3.6e-18 95.5 59 72.9
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 4.7e-18 95.1 105 51.4
Sabra09G0043500 Salix brachista HOM05D007963 ORTHO05D009967 4.7e-18 95.1 113 51.3
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 8.1e-18 94.4 129 45.7
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 8.1e-18 94.4 125 51.2
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 4.0e-17 92.0 93 53.8
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 5.2e-17 91.7 125 42.4
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 1.3e-15 87.0 121 46.3
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 1.7e-15 86.7 57 68.4
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 1.7e-15 86.7 95 53.7
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 2.9e-15 85.9 101 53.5
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 3.7e-15 85.5 82 50.0
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 3.7e-15 85.5 57 70.2
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 6.4e-15 84.7 107 48.6
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 6.4e-15 84.7 107 48.6
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 3.2e-14 82.4 107 47.7
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 4.1e-14 82.0 92 48.9
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 4.1e-14 82.0 111 45.9
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 5.4e-14 81.6 99 46.5
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 5.4e-14 81.6 99 46.5
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 7.1e-14 81.3 82 53.7
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 2.1e-13 79.7 101 51.5
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 2.1e-13 79.7 111 45.0
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 2.1e-13 79.7 111 45.0
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 4.6e-13 78.6 128 46.1
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 1.9e-11 73.2 74 55.4
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 2.5e-11 72.8 90 52.2
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 5.6e-11 71.6 58 60.3
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 2.4e-09 66.2 50 60.0
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 2.4e-09 66.2 50 60.0
C04p40920 Brassica napus HOM05D007963 ORTHO05D009967 4.0e-09 65.5 76 47.4
Aa31LG10G7140 Aethionema arabicum HOM05D007963 ORTHO05D009967 1.2e-08 63.9 107 39.3
ATR0332G088 Amborella trichopoda HOM05D007963 ORTHO05D009967 1.7e-07 60.1 52 50.0
AagrBONN_evm.TU.Sc2ySwM_228.4962 Anthoceros agrestis HOM05D025110 ORTHO05D009967 5.4e-06 55.1 34 67.6
Pp3c24_5190 Physcomitrium patens HOM05D025110 ORTHO05D009967 7.1e-06 54.7 64 48.4


User provided reference genes

Program Settings