Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 2.2e-72 275.4 130 100.0
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.2e-72 275.4 130 100.0
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.2e-72 275.4 130 100.0
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 6.5e-72 273.9 130 99.2
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 4.4e-68 261.2 130 92.3
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 7.5e-68 260.4 130 93.1
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 7.5e-68 260.4 130 93.1
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 9.7e-68 260.0 130 93.1
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.2e-67 258.8 130 92.3
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.2e-67 258.8 130 92.3
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 3.7e-67 258.1 130 92.3
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 8.3e-67 256.9 130 93.8
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 1.1e-66 256.5 130 91.5
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 5.3e-66 254.2 125 93.6
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 9.1e-66 253.4 125 93.6
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 9.1e-66 253.4 125 93.6
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 1.2e-65 253.1 125 93.6
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 2.0e-65 252.3 125 93.6
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 2.7e-65 251.9 125 92.8
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 3.5e-65 251.5 125 92.8
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 4.5e-65 251.1 128 90.6
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 4.5e-65 251.1 125 92.0
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 4.5e-65 251.1 125 92.0
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 5.9e-65 250.8 125 92.8
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 7.7e-65 250.4 125 92.8
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 7.7e-65 250.4 125 92.0
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 7.7e-65 250.4 125 92.8
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.0e-64 250.0 125 91.2
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.0e-64 250.0 125 91.2
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 1.0e-64 250.0 125 91.2
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 1.0e-64 250.0 125 91.2
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 1.0e-64 250.0 125 92.0
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 1.3e-64 249.6 125 91.2
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 2.2e-64 248.8 125 91.2
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 2.2e-64 248.8 125 90.4
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 2.9e-64 248.4 125 91.2
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 2.9e-64 248.4 121 94.2
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 2.9e-64 248.4 123 92.7
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 2.9e-64 248.4 123 92.7
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 2.9e-64 248.4 125 92.0
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 3.8e-64 248.1 125 89.6
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 5.0e-64 247.7 129 88.4
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 5.0e-64 247.7 125 91.2
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 6.5e-64 247.3 124 91.9
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 6.5e-64 247.3 125 92.0
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 6.5e-64 247.3 125 89.6
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 6.5e-64 247.3 125 91.2
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 1.5e-63 246.1 125 90.4
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 1.5e-63 246.1 125 90.4
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.9e-63 245.7 125 90.4
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 1.9e-63 245.7 125 90.4
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 1.9e-63 245.7 125 89.6
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 1.9e-63 245.7 125 89.6
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 1.9e-63 245.7 125 91.2
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 2.5e-63 245.4 125 89.6
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 2.5e-63 245.4 125 88.8
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 2.5e-63 245.4 125 91.2
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 3.2e-63 245.0 121 92.6
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 3.2e-63 245.0 125 88.0
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 5.5e-63 244.2 125 89.6
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 5.5e-63 244.2 125 89.6
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 7.2e-63 243.8 125 88.0
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 7.2e-63 243.8 125 88.8
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 7.2e-63 243.8 125 89.6
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 7.2e-63 243.8 125 89.6
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 7.2e-63 243.8 120 94.2
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 9.4e-63 243.4 125 88.0
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 1.2e-62 243.0 125 89.6
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 1.6e-62 242.7 125 87.2
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 2.1e-62 242.3 120 93.3
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 2.1e-62 242.3 120 93.3
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 2.1e-62 242.3 127 86.6
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 2.1e-62 242.3 120 93.3
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 3.6e-62 241.5 123 90.2
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 3.6e-62 241.5 123 90.2
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 3.6e-62 241.5 120 92.5
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 4.7e-62 241.1 123 90.2
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 8.0e-62 240.4 125 88.0
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 8.0e-62 240.4 120 90.8
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 1.0e-61 240.0 120 92.5
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.0e-61 240.0 124 87.9
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 1.8e-61 239.2 129 85.3
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 2.3e-61 238.8 125 86.4
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 4.0e-61 238.0 120 92.5
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 4.0e-61 238.0 120 90.8
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 4.0e-61 238.0 128 83.6
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 5.2e-61 237.7 123 88.6
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 5.2e-61 237.7 120 90.8
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 6.8e-61 237.3 120 90.8
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 6.8e-61 237.3 120 90.8
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 1.2e-60 236.5 123 89.4
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 1.2e-60 236.5 123 89.4
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 1.2e-60 236.5 123 89.4
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 1.2e-60 236.5 128 83.6
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 2.0e-60 235.7 124 88.7
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 4.4e-60 234.6 125 84.0
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 5.7e-60 234.2 125 83.2
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 7.5e-60 233.8 125 84.8
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 7.5e-60 233.8 123 87.8
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 7.5e-60 233.8 123 87.8
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 7.5e-60 233.8 128 86.7
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 7.5e-60 233.8 128 86.7
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 7.5e-60 233.8 128 86.7
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 7.5e-60 233.8 128 86.7
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 7.5e-60 233.8 120 89.2
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 7.5e-60 233.8 120 89.2
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 1.3e-59 233.0 123 87.8
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 1.7e-59 232.6 150 76.0
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 1.7e-59 232.6 123 87.8
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 2.8e-59 231.9 123 86.2
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 3.7e-59 231.5 156 73.7
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 4.8e-59 231.1 124 86.3
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 1.1e-58 229.9 130 83.1
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 1.8e-58 229.2 119 89.1
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 1.8e-58 229.2 119 89.1
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 1.8e-58 229.2 119 89.1
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 4.1e-58 228.0 123 86.2
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 4.1e-58 228.0 120 85.0
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 5.4e-58 227.6 123 86.2
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 4.5e-57 224.6 111 90.1
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 7.7e-57 223.8 130 81.5
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 1.3e-56 223.0 123 83.7
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 2.3e-56 222.2 170 65.3
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 2.3e-56 222.2 120 84.2
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 4.2e-55 218.0 138 73.9
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 1.6e-54 216.1 125 77.6
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 2.8e-54 215.3 120 78.3
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 6.1e-54 214.2 125 76.0
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 6.1e-54 214.2 112 89.3
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 1.0e-53 213.4 124 81.5
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 2.3e-53 212.2 114 85.1
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 4.0e-53 211.5 114 85.1
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 5.2e-53 211.1 109 87.2
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.0e-52 209.1 149 72.5
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 2.0e-52 209.1 120 75.8
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 6.3e-51 204.1 108 88.0
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 4.9e-43 177.9 123 72.4
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 8.3e-43 177.2 100 85.0
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.2e-42 175.3 182 54.4
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 4.1e-42 174.9 97 82.5
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 5.4e-42 174.5 92 84.8
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 1.3e-40 169.9 81 93.8
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 3.0e-40 168.7 86 88.4
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 6.6e-40 167.5 81 93.8
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 2.5e-39 165.6 81 93.8
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 5.6e-39 164.5 133 64.7
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 1.6e-38 162.9 76 96.1
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 1.6e-38 162.9 76 97.4
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 3.6e-38 161.8 77 93.5
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 3.1e-37 158.7 125 64.0
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 6.8e-37 157.5 76 92.1
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 2.6e-36 155.6 78 92.3
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 1.3e-35 153.3 109 68.8
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 4.9e-35 151.4 78 91.0
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 2.3e-32 142.5 78 84.6
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 1.5e-31 139.8 118 58.5
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 3.3e-31 138.7 123 56.1
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 9.5e-31 137.1 64 96.9
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 4.7e-30 134.8 76 82.9
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 5.2e-29 131.3 73 80.8
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 7.8e-25 117.5 57 91.2
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 1.3e-24 116.7 122 53.3
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 1.3e-24 116.7 122 53.3
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 1.2e-22 110.2 52 94.2
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 1.5e-20 103.2 57 84.2
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 4.3e-15 85.1 44 88.6


User provided reference genes

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