Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g30300 Fragaria vesca HOM05D006182 ORTHO05D007236 0.0e+00 2771.5 1378 100.0
FAN18G2601 Fragaria x ananassa HOM05D006182 ORTHO05D007236 0.0e+00 2666.0 1410 95.3
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 0.0e+00 2634.8 1384 95.5
RcHm_v2.0_Chr7g0224651 Rosa chinensis HOM05D006182 ORTHO05D007236 0.0e+00 2328.1 1387 84.9
Prupe.1G390200 Prunus persica HOM05D006182 ORTHO05D007236 0.0e+00 1831.6 1402 67.2
MD08G1060500 Malus domestica HOM05D006182 ORTHO05D007236 0.0e+00 1675.2 1407 62.5
CiPaw.15G064200 Carya illinoinensis HOM05D006182 ORTHO05D007236 0.0e+00 1263.4 1411 49.8
QL02p006174 Quercus lobata HOM05D006182 ORTHO05D007236 0.0e+00 1245.0 1427 49.6
Atru.chr13.613 Acer truncatum HOM05D006182 ORTHO05D007236 0.0e+00 1223.4 1402 48.9
Cfa018501 Carpinus fangiana HOM05D006182 ORTHO05D007236 0.0e+00 1216.1 1393 49.9
Haze_17575 Corylus avellana HOM05D006182 ORTHO05D007236 0.0e+00 1192.6 1469 47.4
Potri.002G129000 Populus trichocarpa HOM05D006182 ORTHO05D007236 0.0e+00 1184.5 1397 48.0
CANSAT64G1322 Cannabis sativa HOM05D006182 ORTHO05D007236 0.0e+00 1177.5 1413 48.5
Manes.05G170000 Manihot esculenta HOM05D006182 ORTHO05D007236 0.0e+00 1167.5 1411 47.3
Sabra02G0101100 Salix brachista HOM05D006182 ORTHO05D007236 0.0e+00 1075.5 1436 44.9
TWI56G0571 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 2.8e-311 1072.4 1401 44.9
Actinidia22605 Actinidia chinensis HOM05D006182 ORTHO05D007236 6.6e-311 1071.2 1404 44.9
Duzib093G2194 Durio zibethinus HOM05D006182 ORTHO05D007236 1.9e-299 1033.1 1411 45.1
Dinv35991 Davidia involucrata HOM05D006182 ORTHO05D007236 4.8e-298 1028.5 1247 48.2
CsaV3_4G034020 Cucumis sativus L. HOM05D006182 ORTHO05D007236 6.5e-295 1018.1 1423 44.2
Thecc.08G014800 Theobroma cacao HOM05D006182 ORTHO05D007236 1.9e-294 1016.5 1400 44.6
Nn6g32369 Nelumbo nucifera HOM05D006182 ORTHO05D007236 4.8e-290 1001.9 1419 43.7
vmacro21568 Vaccinium macrocarpon HOM05D006182 ORTHO05D007236 2.4e-289 999.6 1404 43.7
Sed0017871 Sechium edule HOM05D006182 ORTHO05D007236 4.5e-280 968.8 1400 42.6
PGR031G1311 Punica granatum HOM05D006182 ORTHO05D007236 6.1e-277 958.4 1406 42.7
ClCG05G019560 Citrullus lanatus HOM05D006182 ORTHO05D007236 1.1e-275 954.1 1359 43.9
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 2.6e-275 953.0 1401 41.8
Lj4A50G37 Lonicera japonica HOM05D006182 ORTHO05D007236 1.5e-267 927.2 1414 41.2
Hma1.2p1_0951F.1_g240770 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 2.0e-267 926.8 1341 43.2
MELO3C032401.2 Cucumis melo HOM05D006182 ORTHO05D007236 8.3e-266 921.4 1437 41.1
Psat4g135680 Pisum sativum HOM05D006182 ORTHO05D007236 1.3e-263 914.1 1411 40.5
Cc00_g16120 Coffea canephora HOM05D006182 ORTHO05D007236 1.8e-252 877.1 1415 38.8
Gohir.A05G016750 Gossypium hirsutum HOM05D006182 ORTHO05D007236 7.5e-251 871.7 1403 41.1
Lj3g0019378 Lotus japonicus HOM05D006182 ORTHO05D007236 6.3e-250 868.6 1398 40.6
Gorai.009G018100 Gossypium raimondii HOM05D006182 ORTHO05D007236 1.0e-247 861.3 1402 40.9
Phvul.011G175100 Phaseolus vulgaris HOM05D006182 ORTHO05D007236 3.3e-246 856.3 1409 40.2
arahy.Tifrunner.gnm1.ann1.I266YZ Arachis hypogaea HOM05D006182 ORTHO05D007236 9.5e-246 854.7 1407 40.4
MBI16_g27588_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 6.1e-245 852.0 1430 40.6
arahy.Tifrunner.gnm1.ann1.903WAW Arachis hypogaea HOM05D006182 ORTHO05D007236 2.3e-244 850.1 1407 40.2
Aqoxy2G01750 Aquilegia oxysepala HOM05D006182 ORTHO05D007236 4.0e-244 849.4 1429 39.0
CAN.G210.12 Capsicum annuum HOM05D006182 ORTHO05D007236 1.2e-243 847.8 1405 37.9
PGSC0003DMG400031482 Solanum tuberosum HOM05D006182 ORTHO05D007236 3.2e-241 839.7 1414 38.6
Sopen07g009980 Solanum pennellii HOM05D006182 ORTHO05D007236 1.2e-235 821.2 1412 37.8
DCAR_012766 Daucus carota HOM05D006182 ORTHO05D007236 2.6e-235 820.1 1399 37.9
PSO541G3468 Papaver somniferum HOM05D006182 ORTHO05D007236 5.8e-235 818.9 1429 37.9
Gohir.D05G017700 Gossypium hirsutum HOM05D006182 ORTHO05D007236 4.1e-233 812.8 1402 39.6
MSTRG.25113 Avicennia marina HOM05D006182 ORTHO05D007236 2.4e-225 786.9 1420 38.5
TPR.G9412 Trifolium pratense HOM05D006182 ORTHO05D007236 9.2e-225 785.0 1222 40.9
ECA232G1194 Erigeron canadensis HOM05D006182 ORTHO05D007236 1.2e-224 784.6 1395 35.7
SGA_v2.0_scaffold217G42430 Striga asiatica HOM05D006182 ORTHO05D007236 6.0e-224 782.3 1413 37.7
THA.LOC104816122 Tarenaya hassleriana HOM05D006182 ORTHO05D007236 2.5e-222 776.9 1396 37.6
HanXRQChr09g0268131 Helianthus annuus HOM05D006182 ORTHO05D007236 2.1e-221 773.9 1396 37.1
EL10Ac1g01812 Beta vulgaris HOM05D006182 ORTHO05D007236 1.1e-214 751.5 1391 36.7
PSO675G0403 Papaver somniferum HOM05D006182 ORTHO05D007236 5.6e-214 749.2 1408 37.3
AL6G43320 Arabidopsis lyrata HOM05D006182 ORTHO05D007236 7.3e-214 748.8 1400 36.7
Aa31LG9G14980 Aethionema arabicum HOM05D006182 ORTHO05D007236 1.8e-212 744.2 1395 36.0
Solyc12g062480.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 3.9e-207 726.5 1159 38.7
Carub.0006s2813 Capsella rubella HOM05D006182 ORTHO05D007236 8.7e-207 725.3 1407 35.9
C09p37620 Brassica napus HOM05D006182 ORTHO05D007236 5.3e-204 716.1 1390 36.6
BcaC04g20947 Brassica carinata HOM05D006182 ORTHO05D007236 1.2e-203 714.9 1388 36.6
Peaxi162Scf00929g00711 Petunia axillaris HOM05D006182 ORTHO05D007236 5.8e-203 712.6 1204 37.3
A09p29430 Brassica napus HOM05D006182 ORTHO05D007236 7.6e-203 712.2 1388 36.1
BolC9t56593H Brassica oleracea HOM05D006182 ORTHO05D007236 2.9e-202 710.3 1394 36.5
SalBow7G1322 Salvia bowleyana HOM05D006182 ORTHO05D007236 2.9e-202 710.3 1416 35.5
Hund17608 Selenicereus undatus HOM05D006182 ORTHO05D007236 4.9e-202 709.5 1397 34.7
BcaB01g01419 Brassica carinata HOM05D006182 ORTHO05D007236 6.4e-202 709.1 1394 36.6
Sp6g07920 Schrenkiella parvula HOM05D006182 ORTHO05D007236 3.2e-201 706.8 1403 35.9
BraA09t38510Z Brassica rapa HOM05D006182 ORTHO05D007236 4.2e-201 706.4 1396 36.2
Sopen12g025610 Solanum pennellii HOM05D006182 ORTHO05D007236 7.1e-201 705.7 1410 35.2
Lsat_1_v5_gn_4_124380 Lactuca sativa HOM05D006182 ORTHO05D007236 9.3e-201 705.3 1394 34.6
Thhalv10029299m.g Eutrema salsugineum HOM05D006182 ORTHO05D007236 2.1e-200 704.1 1402 35.7
Nitab4.5_0003237g0020 Nicotiana tabacum HOM05D006182 ORTHO05D007236 3.7e-197 693.3 1193 37.8
FAN10G2690 Fragaria x ananassa HOM05D006182 ORTHO05D007236 4.9e-194 682.9 362 94.8
Nitab4.5_0001611g0150 Nicotiana tabacum HOM05D006182 ORTHO05D007236 9.6e-190 668.7 1301 35.6
AUR62031379 Chenopodium quinoa HOM05D006182 ORTHO05D007236 8.2e-181 639.0 1519 32.1
Ciclev10003312m.g Citrus clementina HOM05D006182 ORTHO05D007236 4.1e-180 636.7 832 45.8
ATR0225G007 Amborella trichopoda HOM05D006182 ORTHO05D007236 5.3e-180 636.3 1484 33.0
AT4G09680 Arabidopsis thaliana HOM05D006182 ORTHO05D007236 3.8e-178 630.2 1223 36.2
Ah.05g168900 Amaranthus hybridus HOM05D006182 ORTHO05D007236 1.9e-177 627.9 1420 32.4
COL.COLO4_26443 Corchorus olitorius HOM05D006182 ORTHO05D007236 2.3e-175 620.9 1018 39.2
Glyma.08G236800 Glycine max HOM05D006182 ORTHO05D007236 3.9e-175 620.2 970 41.2
FAN16G1533 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.9e-169 601.3 362 85.4
Solyc07g021120.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 7.2e-169 599.4 1099 37.0
FAN19G3122 Fragaria x ananassa HOM05D006182 ORTHO05D007236 4.2e-153 547.0 279 97.8
Zm00001eb311480 Zea mays HOM05D006182 ORTHO05D007236 2.5e-137 494.6 1395 30.6
FAN17G1630 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.2e-136 492.3 264 93.6
Sc15g0006450 Simmondsia chinensis HOM05D006182 ORTHO05D007236 1.8e-135 488.4 937 35.4
unitig_8.g5014 Utricularia gibba HOM05D006182 ORTHO05D007236 1.7e-133 481.9 1389 29.7
Oeu033637.2 Olea europaea HOM05D006182 ORTHO05D007236 9.2e-124 449.5 839 37.1
Migut.C00612 Erythranthe guttata HOM05D006182 ORTHO05D007236 1.6e-120 438.7 1408 29.5
FAN19G0764 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.3e-114 419.1 215 97.2
Oeu032242.1 Olea europaea HOM05D006182 ORTHO05D007236 2.9e-109 401.4 415 50.1
Cpa.g.sc376.1 Carica papaya HOM05D006182 ORTHO05D007236 3.5e-107 394.4 631 39.0
Cpa.g.c37201 Carica papaya HOM05D006182 ORTHO05D007236 3.6e-104 384.4 420 50.5
Lalb_Chr04g0264231 Lupinus albus HOM05D006182 ORTHO05D007236 3.4e-102 377.9 477 46.3
Sc15g0006460 Simmondsia chinensis HOM05D006182 ORTHO05D007236 3.5e-91 341.3 447 43.6
Ciclev10003565m.g Citrus clementina HOM05D006182 ORTHO05D007236 3.5e-83 314.7 385 47.5
HPP92_010557 Vanilla planifolia HOM05D006182 ORTHO05D007236 1.8e-79 302.4 887 31.3
Hma1.2p1_2764F.1_g328150 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 7.1e-76 290.4 375 45.3
TWI36G0305 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 1.6e-67 262.7 420 40.2
GSVIVG01009571001 Vitis vinifera HOM05D006182 ORTHO05D007236 4.6e-67 261.2 270 54.1
Os09g0376000 Oryza sativa ssp. japonica HOM05D006182 ORTHO05D007236 1.9e-65 255.8 481 36.8
Eucgr.F02378 Eucalyptus grandis HOM05D006182 ORTHO05D007236 2.8e-64 251.9 374 40.9
CDE02G1449 Ceratophyllum demersum HOM05D006182 ORTHO05D007236 5.3e-55 221.1 1338 23.2
Pp3c12_3560 Physcomitrium patens HOM05D006182 ORTHO05D007236 1.2e-54 219.9 1077 25.0
VMungo1127G0903 Vigna mungo HOM05D006182 ORTHO05D007236 2.6e-54 218.8 624 31.1
Lalb_Chr04g0264181 Lupinus albus HOM05D006182 ORTHO05D007236 3.2e-52 211.8 281 43.4
SEGI_31096 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 3.7e-48 198.4 679 27.8
Lalb_Chr04g0264191 Lupinus albus HOM05D006182 ORTHO05D007236 1.0e-45 190.3 407 34.6
Mapoly0037s0065 Marchantia polymorpha HOM05D006182 ORTHO05D007236 4.0e-42 178.3 595 26.1
GSVIVG01009572001 Vitis vinifera HOM05D006182 ORTHO05D007236 6.7e-42 177.6 121 71.9
CARHR260630 Cardamine hirsuta HOM05D006182 ORTHO05D007236 2.4e-39 169.1 611 26.7
Nitab4.5_0001611g0140 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.2e-35 156.8 210 41.9
Lalb_Chr04g0264211 Lupinus albus HOM05D006182 ORTHO05D007236 9.8e-33 147.1 193 42.5
Nitab4.5_0003237g0010 Nicotiana tabacum HOM05D006182 ORTHO05D007236 2.8e-32 145.6 199 40.7
Ca_05108_v3 Cicer arietinum L. HOM05D006182 ORTHO05D007236 6.3e-32 144.4 169 47.9
SMO356G0287 Selaginella moellendorffii HOM05D006182 ORTHO05D007236 1.8e-26 126.3 561 26.7
SHI08237 Sapria himalayana HOM05D006182 ORTHO05D007236 4.0e-26 125.2 277 35.7
HPP92_010556 Vanilla planifolia HOM05D006182 ORTHO05D007236 3.4e-25 122.1 210 37.1
SEGI_35767 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 9.2e-23 114.0 269 32.0
Dinv00354 Davidia involucrata HOM05D006182 ORTHO05D007236 6.8e-18 97.8 58 77.6
FAN18G1201 Fragaria x ananassa HOM05D010466 ORTHO05D007236 1.3e-16 93.6 45 86.7
SEGI_08955 Sequoiadendron giganteum HOM05D009451 ORTHO05D010233 2.7e-14 85.9 536 24.3
Dinv35387 Davidia involucrata HOM05D013161 ORTHO05D007236 3.5e-14 85.5 52 75.0
unitig_19.g30005 Utricularia gibba HOM05D006182 ORTHO05D007236 2.3e-13 82.8 228 28.5
SEGI_19792 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 7.5e-09 67.8 295 26.4
Psat2g076400 Pisum sativum HOM05D002050 ORTHO05D001949 2.2e-08 66.2 36 80.6
Solyc07g021115.1 Solanum lycopersicum HOM05D006182 ORTHO05D007236 7.8e-06 57.8 80 37.5


User provided reference genes

Program Settings