Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g30251 Fragaria vesca HOM05D001582 ORTHO05D197998 5.6e-261 903.7 433 100.0
FvH4_3g33711 Fragaria vesca HOM05D003729 ORTHO05D001837 2.2e-116 423.3 240 86.7
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 2.9e-31 140.6 142 57.0
FvH4_1g11391 Fragaria vesca HOM05D001582 ORTHO05D001598 8.1e-18 95.9 161 41.0
RcHm_v2.0_Chr4g0406971 Rosa chinensis HOM05D001582 ORTHO05D001598 1.8e-17 94.7 163 41.1
RcHm_v2.0_Chr2g0098941 Rosa chinensis HOM05D001582 ORTHO05D001598 5.3e-17 93.2 163 40.5
Carub.0002s0476 Capsella rubella HOM05D001582 ORTHO05D001598 6.9e-17 92.8 163 39.9
AL2G16040 Arabidopsis lyrata HOM05D001582 ORTHO05D001598 1.2e-16 92.0 163 39.9
Medtr5g037070 Medicago truncatula HOM05D001582 ORTHO05D001598 2.6e-16 90.9 143 40.6
BolC1t03677H Brassica oleracea HOM05D001582 ORTHO05D001598 3.4e-16 90.5 186 37.1
Glyma.18G182100 Glycine max HOM05D001582 ORTHO05D001598 4.4e-16 90.1 143 42.0
Sp2g04190 Schrenkiella parvula HOM05D001582 ORTHO05D001598 4.4e-16 90.1 185 35.7
Dinv07121 Davidia involucrata HOM05D001582 ORTHO05D001598 5.8e-16 89.7 166 38.0
Duzib205G0094 Durio zibethinus HOM05D001582 ORTHO05D001598 7.6e-16 89.4 193 35.2
Lalb_Chr03g0032501 Lupinus albus HOM05D001582 ORTHO05D001598 7.6e-16 89.4 187 36.4
VMungo1127G1636 Vigna mungo HOM05D001582 ORTHO05D001598 7.6e-16 89.4 165 38.8
BcaC09g49393 Brassica carinata HOM05D001582 ORTHO05D001598 9.9e-16 89.0 186 36.6
A01p29350 Brassica napus HOM05D001582 ORTHO05D001598 9.9e-16 89.0 186 37.1
C01p37130 Brassica napus HOM05D001582 ORTHO05D001598 9.9e-16 89.0 186 36.6
BraA01t03067Z Brassica rapa HOM05D001582 ORTHO05D001598 9.9e-16 89.0 186 37.1
CSS0013473 Camellia sinensis var. sinensis HOM05D001582 ORTHO05D001598 9.9e-16 89.0 198 36.4
Phvul.011G186500 Phaseolus vulgaris HOM05D001582 ORTHO05D001598 9.9e-16 89.0 169 39.6
TPR.G25039 Trifolium pratense HOM05D001582 ORTHO05D001598 9.9e-16 89.0 143 41.3
Lj3g0023393 Lotus japonicus HOM05D001582 ORTHO05D001598 1.3e-15 88.6 168 38.7
Medtr8g043560 Medicago truncatula HOM05D001582 ORTHO05D001598 1.3e-15 88.6 116 47.4
Prupe.7G172200 Prunus persica HOM05D001582 ORTHO05D001598 1.3e-15 88.6 166 36.7
BcaB04g20272 Brassica carinata HOM05D001582 ORTHO05D001598 1.7e-15 88.2 166 36.1
CiPaw.04G082000 Carya illinoinensis HOM05D001582 ORTHO05D001598 1.7e-15 88.2 164 37.8
Ciclev10000430m.g Citrus clementina HOM05D001582 ORTHO05D001598 1.7e-15 88.2 164 38.4
Dinv24365 Davidia involucrata HOM05D001582 ORTHO05D001598 1.7e-15 88.2 141 41.8
Potri.007G106000 Populus trichocarpa HOM05D001582 ORTHO05D001598 1.7e-15 88.2 170 37.1
vmacro12797 Vaccinium macrocarpon HOM05D001582 ORTHO05D001598 1.7e-15 88.2 166 38.6
Atru.chr4.904 Acer truncatum HOM05D001582 ORTHO05D001598 2.2e-15 87.8 164 37.2
MD14G1040800 Malus domestica HOM05D001582 ORTHO05D001598 2.2e-15 87.8 166 38.0
Psat4g141720 Pisum sativum HOM05D001582 ORTHO05D001598 2.2e-15 87.8 162 37.7
Thhalv10023307m.g Eutrema salsugineum HOM05D001582 ORTHO05D001598 2.9e-15 87.4 163 38.0
Glyma.14G089400 Glycine max HOM05D001582 ORTHO05D001598 2.9e-15 87.4 143 41.3
Gohir.D12G207900 Gossypium hirsutum HOM05D001582 ORTHO05D001598 2.9e-15 87.4 141 40.4
Medtr8g043760 Medicago truncatula HOM05D001582 ORTHO05D001598 2.9e-15 87.4 143 41.3
Thecc.03G311300 Theobroma cacao HOM05D001582 ORTHO05D001598 2.9e-15 87.4 160 37.5
Aa31LG2G9900 Aethionema arabicum HOM05D001582 ORTHO05D001598 3.8e-15 87.0 176 37.5
Gohir.A12G205500 Gossypium hirsutum HOM05D001582 ORTHO05D001598 3.8e-15 87.0 163 38.0
Gorai.008G223400 Gossypium raimondii HOM05D001582 ORTHO05D001598 3.8e-15 87.0 163 38.0
Lj4C839T10 Lonicera japonica HOM05D001582 ORTHO05D001598 3.8e-15 87.0 160 39.4
Sabra07G0086800 Salix brachista HOM05D001582 ORTHO05D001598 3.8e-15 87.0 166 37.3
HanXRQChr11g0343831 Helianthus annuus HOM05D001582 ORTHO05D001598 4.9e-15 86.7 160 38.8
Hma1.2p1_0476F.1_g160800 Hydrangea macrophylla HOM05D001582 ORTHO05D001598 4.9e-15 86.7 143 39.9
Nn3g16145 Nelumbo nucifera HOM05D001582 ORTHO05D001598 4.9e-15 86.7 139 41.0
Nn3g17061 Nelumbo nucifera HOM05D001582 ORTHO05D001598 4.9e-15 86.7 139 41.0
Ca_24117_v3 Cicer arietinum L. HOM05D001582 ORTHO05D001598 6.4e-15 86.3 162 36.4
Gohir.A03G000028 Gossypium hirsutum HOM05D001582 ORTHO05D001598 6.4e-15 86.3 162 38.3
Rhsim01G0228400 Rhododendron simsii HOM05D001582 ORTHO05D001598 6.4e-15 86.3 181 36.5
CSS0004749 Camellia sinensis var. sinensis HOM05D001582 ORTHO05D001598 8.4e-15 85.9 141 41.1
Cc01_g06560 Coffea canephora HOM05D001582 ORTHO05D001598 8.4e-15 85.9 165 38.2
MELO3C008061.2 Cucumis melo HOM05D001582 ORTHO05D001598 8.4e-15 85.9 141 41.1
QL02p001677 Quercus lobata HOM05D001582 ORTHO05D001598 8.4e-15 85.9 164 37.8
Sed0002053 Sechium edule HOM05D001582 ORTHO05D001598 8.4e-15 85.9 141 41.1
COL.COLO4_16921 Corchorus olitorius HOM05D001582 ORTHO05D001598 1.1e-14 85.5 160 38.1
CsaV3_6G041590 Cucumis sativus L. HOM05D001582 ORTHO05D001598 1.1e-14 85.5 141 40.4
ECA246G4675 Erigeron canadensis HOM05D001582 ORTHO05D001598 1.1e-14 85.5 163 37.4
ClCG01G015370 Citrullus lanatus HOM05D001582 ORTHO05D001598 1.4e-14 85.1 185 35.7
Manes.05G206200 Manihot esculenta HOM05D001582 ORTHO05D001598 1.4e-14 85.1 166 36.7
Cpa.g.sc90.38 Carica papaya HOM05D001582 ORTHO05D001598 1.9e-14 84.7 163 39.3
Actinidia28425 Actinidia chinensis HOM05D001582 ORTHO05D001598 2.4e-14 84.3 164 38.4
Oeu004241.1 Olea europaea HOM05D001582 ORTHO05D001598 2.4e-14 84.3 151 38.4
THA.LOC104815571 Tarenaya hassleriana HOM05D001582 ORTHO05D001598 2.4e-14 84.3 174 35.6
GSVIVG01026479001 Vitis vinifera HOM05D001582 ORTHO05D001598 2.4e-14 84.3 139 40.3
CANSAT01G2044 Cannabis sativa HOM05D001582 ORTHO05D001598 3.2e-14 84.0 149 37.6
CARHR052430 Cardamine hirsuta HOM05D001582 ORTHO05D001598 3.2e-14 84.0 165 37.0
Cfa002896 Carpinus fangiana HOM05D001582 ORTHO05D001598 5.4e-14 83.2 185 35.1
Haze_17189 Corylus avellana HOM05D001582 ORTHO05D001598 7.1e-14 82.8 185 35.1
Nitab4.5_0003780g0020 Nicotiana tabacum HOM05D001582 ORTHO05D001598 1.2e-13 82.0 147 37.4
CSS0003892 Camellia sinensis var. sinensis HOM05D001582 ORTHO05D001598 1.6e-13 81.6 141 39.0
CAN.G1609.12 Capsicum annuum HOM05D001582 ORTHO05D001598 2.1e-13 81.3 139 38.8
PGR119G1303 Punica granatum HOM05D001582 ORTHO05D001598 2.1e-13 81.3 168 36.3
Peaxi162Scf00528g00014 Petunia axillaris HOM05D001582 ORTHO05D001598 2.7e-13 80.9 164 36.0
Gorai.003G185900 Gossypium raimondii HOM05D001582 ORTHO05D001598 3.5e-13 80.5 162 37.0
Nitab4.5_0024546g0010 Nicotiana tabacum HOM05D001582 ORTHO05D001598 3.5e-13 80.5 168 35.1
Eucgr.I00201 Eucalyptus grandis HOM05D001582 ORTHO05D001598 4.6e-13 80.1 163 36.2
Lsat_1_v5_gn_1_111740 Lactuca sativa HOM05D001582 ORTHO05D001598 4.6e-13 80.1 162 36.4
TAR628G1543 Trochodendron aralioides HOM05D001582 ORTHO05D001598 4.6e-13 80.1 137 38.7
Solyc04g009970.4 Solanum lycopersicum HOM05D001582 ORTHO05D001598 1.0e-12 79.0 139 38.1
Sopen04g005100 Solanum pennellii HOM05D001582 ORTHO05D001598 1.0e-12 79.0 139 38.1
RcHm_v2.0_Chr6g0269331 Rosa chinensis HOM05D001785 ORTHO05D017011 1.7e-12 78.2 65 60.0
Gohir.D03G176650 Gossypium hirsutum HOM05D001582 ORTHO05D001598 2.3e-12 77.8 162 37.0
PSO170G3843 Papaver somniferum HOM05D001582 ORTHO05D001598 3.0e-12 77.4 147 36.7
PSO407G0098 Papaver somniferum HOM05D001582 ORTHO05D001598 3.0e-12 77.4 147 36.7
MSTRG.2650 Avicennia marina HOM05D001582 ORTHO05D001598 3.9e-12 77.0 176 33.0
DCAR_001212 Daucus carota HOM05D001582 ORTHO05D001598 3.9e-12 77.0 163 34.4
Migut.H00703 Erythranthe guttata HOM05D001582 ORTHO05D001598 5.1e-12 76.6 144 37.5
PSO339G0691 Papaver somniferum HOM05D001582 ORTHO05D001598 5.1e-12 76.6 161 36.0
ATR0796G278 Amborella trichopoda HOM05D001582 ORTHO05D001598 8.7e-12 75.9 147 37.4
SHI11468 Sapria himalayana HOM05D001582 ORTHO05D001598 1.1e-11 75.5 253 27.3
Aqoxy7G03556 Aquilegia oxysepala HOM05D001582 ORTHO05D001598 1.9e-11 74.7 162 34.6
HPP92_011673 Vanilla planifolia HOM05D001582 ORTHO05D001598 1.9e-11 74.7 161 34.8
CSS0043680 Camellia sinensis var. sinensis HOM05D001582 ORTHO05D001598 2.5e-11 74.3 195 33.3
AUR62005141 Chenopodium quinoa HOM05D001582 ORTHO05D001598 2.5e-11 74.3 175 32.6
AUR62000833 Chenopodium quinoa HOM05D001582 ORTHO05D001598 4.3e-11 73.6 150 34.7
Os09g0309100 Oryza sativa ssp. japonica HOM05D001582 ORTHO05D001598 1.3e-10 72.0 137 35.8
EL10Ac4g09347 Beta vulgaris HOM05D001582 ORTHO05D001598 2.1e-10 71.2 141 34.0
CDE02G0448 Ceratophyllum demersum HOM05D001582 ORTHO05D001598 4.8e-10 70.1 131 34.4
CDE02G2653 Ceratophyllum demersum HOM05D001582 ORTHO05D001598 4.8e-10 70.1 131 34.4
SGA_v2.0_scaffold370G50116 Striga asiatica HOM05D001582 ORTHO05D001598 6.2e-10 69.7 143 37.8
unitig_699.g19731 Utricularia gibba HOM05D001582 ORTHO05D001598 1.4e-09 68.6 141 34.0
Hund13003 Selenicereus undatus HOM05D001582 ORTHO05D001598 6.9e-09 66.2 159 31.4
Zm00001eb210830 Zea mays HOM05D001582 ORTHO05D001598 6.9e-09 66.2 159 34.0
Sc07g0007690 Simmondsia chinensis HOM05D001582 ORTHO05D001598 1.2e-08 65.5 168 32.7
RcHm_v2.0_Chr7g0185761 Rosa chinensis HOM05D001582 ORTHO05D001598 1.5e-08 65.1 141 35.5
Ah.06g187800 Amaranthus hybridus HOM05D001582 ORTHO05D001598 2.6e-08 64.3 145 33.8
RcHm_v2.0_Chr7g0219821 Rosa chinensis HOM05D001582 ORTHO05D022610 2.9e-07 60.8 118 37.3
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 4.9e-07 60.1 47 61.7
SGA_v2.0_scaffold237G43810 Striga asiatica HOM05D001582 ORTHO05D001598 6.4e-07 59.7 78 48.7
Rhsim10G0133600 Rhododendron simsii HOM05D003614 ORTHO05D004156 8.4e-07 59.3 100 44.0
RcHm_v2.0_Chr4g0402161 Rosa chinensis HOM05D001801 ORTHO05D017011 1.1e-06 58.9 62 51.6
PSO384G2272 Papaver somniferum HOM05D001582 ORTHO05D001598 2.4e-06 57.8 73 45.2
Dinv35874 Davidia involucrata HOM05D001582 ORTHO05D001598 5.5e-06 56.6 122 30.3
Glyma.14G089900 Glycine max HOM05D001582 ORTHO05D001598 5.5e-06 56.6 101 37.6
Potri.014G054600 Populus trichocarpa HOM05D001582 ORTHO05D001598 7.1e-06 56.2 153 30.1


User provided reference genes

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