Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 2.4e-110 402.1 198 100.0
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 4.0e-105 384.8 206 93.7
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.0e-104 382.5 206 93.7
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 4.1e-102 374.8 198 94.4
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 7.8e-101 370.5 198 90.4
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 4.3e-99 364.8 198 91.9
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 2.5e-91 339.0 198 83.3
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 9.6e-91 337.0 198 82.3
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 3.6e-90 335.1 198 82.3
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 1.7e-87 326.2 198 76.3
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 9.3e-86 320.5 198 76.8
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 6.0e-85 317.8 198 76.3
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 3.9e-84 315.1 198 74.2
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 4.3e-83 311.6 198 72.7
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 4.3e-83 311.6 198 74.7
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 4.3e-83 311.6 198 75.3
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 4.3e-83 311.6 198 75.3
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 1.3e-82 310.1 198 72.2
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 1.6e-82 309.7 199 73.9
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 6.2e-82 307.8 198 71.7
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 1.1e-81 307.0 198 71.7
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 5.3e-81 304.7 198 70.2
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 9.0e-81 303.9 198 71.2
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 9.0e-81 303.9 198 72.7
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 9.0e-81 303.9 198 71.2
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 1.2e-80 303.5 198 69.7
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 1.5e-80 303.1 198 71.7
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 3.4e-80 302.0 198 71.2
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 7.6e-80 300.8 198 72.2
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 9.9e-80 300.4 198 71.2
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 9.9e-80 300.4 198 70.2
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 1.3e-79 300.1 198 69.7
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 1.3e-79 300.1 198 69.7
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.7e-79 299.7 198 71.7
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.9e-79 298.9 198 71.7
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 2.9e-79 298.9 198 71.7
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 4.9e-79 298.1 198 71.2
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 6.4e-79 297.7 198 71.2
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 8.4e-79 297.4 198 70.7
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 9.3e-78 293.9 198 70.7
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 9.3e-78 293.9 198 67.2
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 9.3e-78 293.9 198 69.2
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 2.7e-77 292.4 198 68.7
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 3.5e-77 292.0 200 70.5
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 6.0e-77 291.2 198 68.2
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 6.0e-77 291.2 198 69.7
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 7.9e-77 290.8 198 69.2
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.3e-76 290.0 198 69.2
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 1.3e-76 290.0 198 68.7
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 1.3e-76 290.0 198 68.2
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.3e-76 290.0 200 70.5
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 1.7e-76 289.7 198 68.7
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 2.3e-76 289.3 198 69.2
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 2.3e-76 289.3 198 67.7
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 2.3e-76 289.3 198 68.2
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 3.0e-76 288.9 198 68.2
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 3.0e-76 288.9 198 68.7
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 5.1e-76 288.1 198 69.7
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 5.1e-76 288.1 198 65.7
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 6.6e-76 287.7 198 68.2
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 6.6e-76 287.7 198 67.7
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 6.6e-76 287.7 198 67.2
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 1.9e-75 286.2 198 66.2
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 1.9e-75 286.2 199 68.3
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 2.5e-75 285.8 198 66.7
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 3.3e-75 285.4 198 65.7
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 5.6e-75 284.6 198 66.7
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 5.6e-75 284.6 198 66.7
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 7.3e-75 284.3 198 66.7
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 1.3e-74 283.5 198 66.7
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 1.3e-74 283.5 217 64.1
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 1.6e-74 283.1 198 67.7
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 2.1e-74 282.7 198 66.2
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 4.8e-74 281.6 234 59.4
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 6.2e-74 281.2 234 59.0
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 6.2e-74 281.2 198 65.7
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 1.1e-73 280.4 198 65.7
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 1.1e-73 280.4 198 64.1
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 2.4e-73 279.3 198 65.2
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 3.1e-73 278.9 198 65.2
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 5.3e-73 278.1 198 65.7
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 5.3e-73 278.1 198 66.2
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 2.0e-72 276.2 198 64.1
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 3.4e-72 275.4 198 64.1
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 2.2e-71 272.7 176 73.3
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 2.9e-71 272.3 216 61.1
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 8.4e-71 270.8 253 55.7
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 1.1e-70 270.4 170 74.7
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 1.4e-70 270.0 241 56.8
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 3.2e-70 268.9 219 59.8
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 3.2e-70 268.9 198 61.6
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 1.2e-69 266.9 198 61.1
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 7.9e-69 264.2 233 55.4
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 1.3e-68 263.5 236 55.9
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 5.1e-68 261.5 182 67.6
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 8.7e-68 260.8 198 61.1
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 2.8e-66 255.8 154 79.2
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 2.4e-65 252.7 173 67.1
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 3.1e-65 252.3 188 64.4
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 1.2e-64 250.4 180 65.6
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 2.0e-64 249.6 198 60.6
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 7.1e-62 241.1 198 60.1
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 1.2e-61 240.4 170 63.5
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 1.8e-60 236.5 191 58.1
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 3.9e-60 235.3 155 69.7
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 4.8e-58 228.4 198 57.1
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 8.2e-58 227.6 198 54.5
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 2.0e-56 223.0 167 64.7
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 3.5e-53 212.2 198 49.0
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 4.6e-53 211.8 198 47.5
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 6.1e-53 211.5 135 73.3
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 1.0e-52 210.7 145 66.2
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 1.3e-50 203.8 198 44.9
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 9.0e-49 197.6 194 44.8
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 2.2e-47 193.0 195 44.1
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 2.3e-44 183.0 155 55.5
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 2.0e-43 179.9 143 62.2
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 3.7e-42 175.6 115 67.0
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 3.1e-41 172.6 130 62.3
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 3.1e-41 172.6 185 50.3
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 6.9e-41 171.4 160 48.1
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 2.0e-40 169.9 120 60.8
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 2.0e-40 169.9 115 68.7
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 1.0e-39 167.5 130 56.2
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 1.7e-39 166.8 111 74.8
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 2.6e-35 152.9 142 51.4
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 7.0e-33 144.8 143 47.6
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.6e-32 143.7 115 53.0
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.0e-32 143.3 115 53.0
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 8.8e-28 127.9 87 58.6
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 2.0e-27 126.7 77 83.1
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 6.3e-26 121.7 82 73.2
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 2.4e-25 119.8 77 79.2
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 3.1e-25 119.4 121 52.9
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 1.2e-24 117.5 77 75.3
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 2.7e-24 116.3 145 37.2
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.3e-23 114.0 77 71.4
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 1.7e-23 113.6 75 74.7
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 1.5e-22 110.5 77 70.1
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 2.5e-22 109.8 77 70.1
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 2.5e-22 109.8 77 70.1
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 2.3e-20 103.2 69 73.9
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.3e-20 103.2 77 66.2
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 5.7e-19 98.6 55 80.0
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.3e-18 97.4 83 57.8
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 1.7e-18 97.1 82 56.1
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 1.4e-17 94.0 98 43.9
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 1.4e-17 94.0 72 65.3
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 4.1e-17 92.4 67 59.7
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 7.0e-17 91.7 75 60.0
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 1.3e-15 87.4 145 38.6
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 1.1e-14 84.3 65 60.0
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 4.2e-14 82.4 64 60.9
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 1.2e-13 80.9 76 43.4
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 1.4e-12 77.4 64 45.3
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 3.0e-12 76.3 57 59.6
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 5.2e-12 75.5 46 78.3
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 2.6e-11 73.2 119 34.5
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 1.3e-10 70.9 57 56.1
MCO15G520 Micromonas commoda HOM05D004322 ORTHO05D005033 1.3e-10 70.9 190 22.1
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 1.4e-09 67.4 61 49.2
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 2.3e-07 60.1 53 54.7
VMungo0540G1689 Vigna mungo HOM05D004322 ORTHO05D005033 5.0e-07 58.9 40 75.0
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.9e-06 57.0 63 42.9
Lsat_1_v5_gn_4_104380 Lactuca sativa HOM05D001722 ORTHO05D048310 7.3e-06 55.1 36 50.0


User provided reference genes

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