Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 3.2e-245 851.3 420 100.0
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.2e-244 849.4 420 99.8
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 7.4e-242 840.1 420 98.8
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.4e-240 835.9 420 97.9
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 3.4e-231 804.7 420 93.6
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 1.5e-210 736.1 420 85.7
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 2.2e-201 705.7 420 81.9
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 9.4e-197 690.3 405 83.0
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 1.2e-196 689.9 420 79.3
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 4.4e-194 681.4 420 78.3
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 9.8e-194 680.2 420 79.0
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 3.1e-192 675.2 420 77.1
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 5.4e-192 674.5 420 75.7
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 3.5e-191 671.8 420 76.2
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.7e-190 669.5 420 77.4
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 6.5e-190 667.5 421 78.1
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 2.5e-189 665.6 419 77.1
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 3.2e-189 665.2 420 77.1
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.2e-188 663.3 420 75.7
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 2.1e-188 662.5 420 77.1
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.8e-188 662.1 420 75.5
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 3.6e-188 661.8 420 76.4
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 2.3e-187 659.1 420 76.4
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.3e-187 659.1 420 75.2
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 8.8e-187 657.1 420 76.2
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 8.8e-187 657.1 420 75.5
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 2.0e-186 656.0 420 76.4
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 2.0e-186 656.0 420 75.0
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 5.7e-186 654.4 420 75.7
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 5.7e-186 654.4 420 75.2
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 8.3e-185 650.6 420 74.8
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 5.4e-184 647.9 420 74.5
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 1.6e-183 646.4 420 74.8
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 4.5e-183 644.8 420 75.5
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 5.9e-183 644.4 420 74.8
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 2.3e-182 642.5 420 73.6
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 5.0e-182 641.3 420 73.8
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 8.6e-182 640.6 420 74.0
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 2.5e-181 639.0 420 73.6
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 5.6e-181 637.9 420 73.8
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 7.3e-181 637.5 420 72.4
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 1.2e-180 636.7 420 74.5
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 4.7e-180 634.8 420 73.1
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 2.3e-179 632.5 420 71.0
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 5.2e-179 631.3 420 72.6
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 6.8e-179 630.9 420 72.1
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 8.9e-179 630.6 420 71.7
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 3.4e-178 628.6 419 71.4
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 9.8e-178 627.1 415 71.8
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 1.3e-177 626.7 420 70.5
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 1.7e-177 626.3 420 73.8
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 2.2e-177 625.9 420 71.7
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 3.7e-177 625.2 420 71.9
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 3.7e-177 625.2 420 71.7
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 8.3e-177 624.0 420 71.2
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 2.4e-176 622.5 420 72.1
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 3.2e-176 622.1 420 69.8
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 7.8e-175 617.5 420 71.2
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 7.8e-175 617.5 410 72.4
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 1.0e-174 617.1 420 72.1
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 1.3e-174 616.7 420 71.0
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 2.3e-174 615.9 420 69.8
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 8.6e-174 614.0 420 72.6
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 1.9e-173 612.8 421 71.5
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 2.5e-173 612.5 421 71.5
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 7.3e-173 610.9 407 71.3
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 2.1e-172 609.4 425 69.6
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 2.8e-172 609.0 420 71.2
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 2.8e-172 609.0 420 68.8
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 4.7e-172 608.2 425 69.6
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 1.8e-171 606.3 423 70.2
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 2.3e-171 605.9 423 71.9
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 3.1e-171 605.5 420 70.5
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 6.8e-171 604.4 421 70.3
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 8.9e-171 604.0 425 68.9
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 2.0e-170 602.8 425 68.5
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 5.8e-170 601.3 421 69.4
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 1.7e-169 599.7 421 69.1
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 2.2e-169 599.4 420 68.3
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 3.2e-168 595.5 420 67.6
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 7.0e-168 594.3 420 68.3
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 1.2e-167 593.6 421 69.4
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 1.6e-167 593.2 420 69.0
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 2.3e-166 589.3 421 69.6
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 1.1e-165 587.0 424 69.3
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 3.3e-165 585.5 420 69.5
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 5.6e-165 584.7 420 66.7
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 3.1e-163 578.9 420 67.6
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 6.8e-163 577.8 420 67.9
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 1.1e-160 570.5 420 67.1
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 1.9e-160 569.7 420 65.7
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 2.4e-160 569.3 422 67.1
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 2.4e-160 569.3 420 65.2
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 3.2e-160 568.9 420 66.0
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 4.1e-160 568.5 420 65.7
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 3.0e-158 562.4 420 65.5
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 5.1e-158 561.6 420 65.0
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 1.5e-157 560.1 420 64.5
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 1.5e-157 560.1 420 64.5
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 2.5e-157 559.3 420 64.8
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 7.3e-157 557.8 420 63.6
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 2.1e-156 556.2 420 64.0
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 1.1e-155 553.9 420 63.1
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 1.8e-155 553.1 421 66.5
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 6.4e-153 544.7 421 62.5
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 1.2e-151 540.4 421 65.1
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 1.6e-151 540.0 421 65.3
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 3.5e-151 538.9 377 69.0
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 7.8e-151 537.7 422 65.2
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 2.2e-145 519.6 420 60.0
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 9.3e-144 514.2 420 59.8
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 6.2e-140 501.5 425 58.4
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 7.6e-138 494.6 421 57.5
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 4.0e-131 472.2 357 67.5
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 4.8e-124 448.7 405 53.6
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 8.4e-121 438.0 425 51.8
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 1.3e-118 430.6 425 51.3
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 3.8e-113 412.5 250 80.4
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 1.8e-110 403.7 422 50.5
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 1.8e-110 403.7 282 69.9
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 2.2e-108 396.7 397 52.6
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 1.5e-106 390.6 403 47.6
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 2.1e-87 327.0 303 57.1
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 1.4e-86 324.3 305 54.4
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 3.0e-86 323.2 374 44.4
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 2.0e-85 320.5 410 43.2
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.6e-82 310.8 248 59.7
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 9.2e-67 258.5 303 44.9
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.1e-64 251.5 266 51.9
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 1.5e-61 241.1 135 82.2
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 3.1e-46 190.3 161 61.5
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 5.8e-45 186.0 131 69.5
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 2.7e-34 150.6 98 70.4
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 1.4e-30 138.3 90 70.0
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 9.6e-24 115.5 73 71.2
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 2.1e-23 114.4 70 72.9
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 6.9e-22 109.4 70 71.4
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 9.9e-21 105.5 70 70.0
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 9.9e-21 105.5 70 70.0
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 2.9e-20 104.0 79 63.3
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 1.9e-19 101.3 100 55.0
FAN17G2978 Fragaria x ananassa HOM05D030415 ORTHO05D006431 2.8e-15 87.4 193 36.8
Glyma.19G194600 Glycine max HOM05D003488 ORTHO05D004214 6.7e-09 66.2 244 27.0
Lalb_Chr02g0154961 Lupinus albus HOM05D003488 ORTHO05D004214 8.7e-09 65.9 241 24.1
Aa31LG2G3560 Aethionema arabicum HOM05D003488 ORTHO05D004214 1.5e-08 65.1 317 23.3
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 5.6e-08 63.2 239 24.3
FvH4_6g18580 Fragaria vesca HOM05D003488 ORTHO05D004214 7.4e-08 62.8 285 23.9
FAN05G2045 Fragaria x ananassa HOM05D003488 ORTHO05D004214 7.4e-08 62.8 285 23.9
CBR_g31165 Chara braunii HOM05D019043 ORTHO05D020397 1.3e-07 62.0 297 25.6
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 1.3e-07 62.0 239 24.3
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 1.3e-07 62.0 239 24.3
MBI05_g43550_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 1.3e-07 62.0 275 25.1
Prupe.7G111200 Prunus persica HOM05D003488 ORTHO05D004214 2.1e-07 61.2 320 22.8
FAN05G0207 Fragaria x ananassa HOM05D003488 ORTHO05D004214 3.7e-07 60.5 285 23.5
MD14G1022200 Malus domestica HOM05D003488 ORTHO05D004214 3.7e-07 60.5 320 22.5
Medtr7g104490 Medicago truncatula HOM05D003488 ORTHO05D004214 4.8e-07 60.1 284 24.3
AUR62002982 Chenopodium quinoa HOM05D000312 ORTHO05D002725 1.1e-06 58.9 217 26.3
Medtr2g047872 Medicago truncatula HOM05D000312 ORTHO05D000221 2.4e-06 57.8 213 24.4
THA.LOC104815726 Tarenaya hassleriana HOM05D003488 ORTHO05D004214 2.4e-06 57.8 303 21.5


User provided reference genes

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